Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47235 * 2 1 4 4 C 1.38623 * 120.39738 * 125.02354 * 3 2 1 5 5 C 1.38586 * 118.55629 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40150 * 180.02562 * 5 4 3 7 7 N 1.32290 * 119.19906 * 0.02562 * 5 4 3 8 8 C 1.32484 * 120.73864 * 359.97438 * 7 5 4 9 9 N 1.38407 * 119.21259 * 180.02562 * 8 7 5 10 10 C 1.46502 * 119.99500 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00498 * 0.02562 * 9 8 7 12 12 C 1.50701 * 109.47473 * 89.99338 * 11 9 8 13 13 H 1.08002 * 119.99779 * 0.02562 * 12 11 9 14 14 C 1.37869 * 120.00047 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00246 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00035 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47054 * 90.00158 * 16 14 12 18 18 H 1.48493 * 109.47472 * 210.00146 * 16 14 12 19 19 H 1.48502 * 109.47284 * 330.00891 * 16 14 12 20 20 N 1.32263 * 120.40252 * 305.00168 * 3 2 1 21 21 H 1.09006 * 109.46828 * 300.00094 * 1 2 3 22 22 H 1.08999 * 109.47038 * 59.99319 * 1 2 3 23 23 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46828 * 239.99906 * 2 1 3 25 25 H 1.08999 * 109.47038 * 120.00681 * 2 1 3 26 26 H 1.08001 * 120.72487 * 359.95876 * 4 3 2 27 27 H 1.09001 * 109.47344 * 269.98128 * 6 5 4 28 28 H 1.09001 * 109.47291 * 29.98041 * 6 5 4 29 29 H 1.08998 * 109.46861 * 149.98654 * 6 5 4 30 30 H 1.09006 * 109.47173 * 90.00739 * 10 9 8 31 31 H 1.09000 * 109.46892 * 210.00134 * 10 9 8 32 32 H 1.08999 * 109.47282 * 330.00273 * 10 9 8 33 33 H 1.08996 * 109.46902 * 209.99895 * 11 9 8 34 34 H 1.09010 * 109.46523 * 329.99553 * 11 9 8 35 35 H 0.97004 * 120.00264 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9132 1.8534 0.9792 5 6 3.3513 3.1676 0.9424 6 6 4.3094 3.6816 1.9858 7 7 2.9182 3.9656 -0.0198 8 6 2.0762 3.5207 -0.9408 9 7 1.6437 4.3827 -1.9336 10 6 0.7131 3.9086 -2.9609 11 6 2.1173 5.7688 -1.9577 12 6 3.3765 5.8552 -2.7812 13 1 3.7830 4.9666 -3.2411 14 6 4.0088 7.0689 -2.9485 15 7 3.5135 8.1511 -2.3890 16 14 5.5691 7.1762 -3.9699 17 1 5.2156 7.4462 -5.3868 18 1 6.4235 8.2760 -3.4546 19 1 6.3085 5.8914 -3.8806 20 7 1.6386 2.2700 -0.9344 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.2505 1.1809 1.7540 27 1 3.7473 4.0868 2.8273 28 1 4.9426 2.8646 2.3317 29 1 4.9313 4.4654 1.5534 30 1 -0.3114 4.0718 -2.6264 31 1 0.8844 4.4570 -3.8872 32 1 0.8739 2.8445 -3.1336 33 1 1.3509 6.4070 -2.3974 34 1 2.3254 6.0993 -0.9399 35 1 3.9582 9.0051 -2.5070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613262421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = 45.380792 kcal Electronic energy + Delta-G solvation = -16539.061706 eV Core-core repulsion = 13958.149926 eV Total energy + Delta-G solvation = -2580.911780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35504 -36.23559 -34.76986 -32.92505 -31.96576 -30.35170 -28.24358 -27.39730 -25.52312 -24.12509 -23.08421 -20.65309 -20.28802 -16.96588 -16.51100 -16.15985 -14.89467 -14.82155 -14.54589 -14.06209 -13.96663 -13.34291 -13.25729 -12.92297 -12.51164 -12.11207 -12.08515 -11.82090 -11.51573 -11.37634 -11.16233 -11.05074 -10.86398 -10.56046 -10.21909 -10.06924 -9.79985 -9.62827 -9.08227 -8.44477 -8.25884 -6.96010 -6.00551 -4.06461 1.81951 1.88612 3.30532 3.36724 3.41249 3.66492 4.43685 4.53968 4.62330 4.81637 5.16393 5.31183 5.37038 5.44968 5.48315 5.71012 5.81984 5.86228 5.88684 5.90485 6.01148 6.13613 6.15052 6.27133 6.35057 6.39699 6.43096 6.87550 7.14988 7.46827 7.71454 7.87081 7.97909 8.26307 8.42666 8.93433 9.17543 9.57837 11.05337 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.007155 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.061781 B = 3912.512749 C = 4437.355916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C 0.213 3.787 4 C -0.318 4.318 5 C 0.215 3.785 6 C -0.103 4.103 7 N -0.549 5.549 8 C 0.577 3.423 9 N -0.567 5.567 10 C 0.107 3.893 11 C 0.256 3.744 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.276 1.276 20 N -0.585 5.585 21 H 0.050 0.950 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -12.966 6.237 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C 0.064 3.936 4 C -0.345 4.345 5 C 0.064 3.936 6 C -0.160 4.160 7 N -0.272 5.272 8 C 0.221 3.779 9 N -0.279 5.279 10 C -0.037 4.037 11 C 0.137 3.863 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.201 1.201 20 N -0.311 5.311 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.590 -11.921 5.314 13.537 hybrid contribution 1.241 -0.350 0.026 1.290 sum -2.349 -12.271 5.340 13.588 Atomic orbital electron populations 1.21631 0.94229 1.01193 1.02763 1.20445 0.96875 0.90615 1.02785 1.21168 0.89440 0.94864 0.88137 1.21928 1.08692 0.98514 1.05396 1.21371 0.91410 0.89380 0.91396 1.20709 0.97358 1.01968 0.95988 1.67941 1.15730 1.38227 1.05281 1.19311 0.86306 0.85055 0.87198 1.46776 1.45353 1.11730 1.24008 1.21457 0.91248 1.00185 0.90772 1.19366 0.94237 0.73634 0.99103 1.21430 1.09367 0.94001 1.31204 0.92715 1.24893 0.97574 0.95515 0.95962 1.69931 1.40208 0.99132 1.44183 0.86525 0.83181 0.77675 0.80188 1.20670 1.21080 1.20058 1.67639 1.31635 1.03315 1.28471 0.93061 0.91503 0.92669 0.90108 0.90478 0.85326 0.90360 0.90881 0.89964 0.94260 0.91239 0.91482 0.94997 0.93178 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.78 37.16 0.36 -1.23 16 2 C -0.07 -0.84 6.36 -27.88 -0.18 -1.01 16 3 C 0.21 3.57 6.20 -82.26 -0.51 3.06 16 4 C -0.32 -5.13 9.48 -39.31 -0.37 -5.50 16 5 C 0.22 3.99 6.82 -82.27 -0.56 3.43 16 6 C -0.10 -1.47 10.22 36.01 0.37 -1.11 16 7 N -0.55 -12.64 9.05 -10.16 -0.09 -12.73 16 8 C 0.58 13.20 8.17 -322.81 -2.64 10.56 16 9 N -0.57 -13.30 2.96 -185.31 -0.55 -13.85 16 10 C 0.11 2.06 10.44 59.85 0.62 2.69 16 11 C 0.26 6.85 5.16 -5.19 -0.03 6.83 16 12 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 13 H 0.05 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 N -0.59 -11.69 8.71 -10.15 -0.09 -11.78 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.86 7.98 -51.93 -0.41 0.45 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16 26 H 0.13 1.61 8.01 -52.49 -0.42 1.19 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.46 7.33 -51.92 -0.38 1.08 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -32.25 300.15 -9.19 -41.44 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.35 Total: -2.95 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -3.35 Total: 4.11 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 0.01 Total: -64.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.25 -9.19 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613262421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.824 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds