Wall clock time and date at job start Sun Mar 29 2020 21:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47235 * 2 1 4 4 C 1.38623 * 120.39738 * 125.02354 * 3 2 1 5 5 C 1.38586 * 118.55629 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40150 * 180.02562 * 5 4 3 7 7 N 1.32290 * 119.19906 * 0.02562 * 5 4 3 8 8 C 1.32484 * 120.73864 * 359.97438 * 7 5 4 9 9 N 1.38407 * 119.21259 * 180.02562 * 8 7 5 10 10 C 1.46502 * 119.99500 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00498 * 0.02562 * 9 8 7 12 12 C 1.50701 * 109.47473 * 89.99338 * 11 9 8 13 13 H 1.08002 * 119.99779 * 0.02562 * 12 11 9 14 14 C 1.37869 * 120.00047 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00246 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00035 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47054 * 90.00158 * 16 14 12 18 18 H 1.48493 * 109.47472 * 210.00146 * 16 14 12 19 19 H 1.48502 * 109.47284 * 330.00891 * 16 14 12 20 20 N 1.32263 * 120.40252 * 305.00168 * 3 2 1 21 21 H 1.09006 * 109.46828 * 300.00094 * 1 2 3 22 22 H 1.08999 * 109.47038 * 59.99319 * 1 2 3 23 23 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46828 * 239.99906 * 2 1 3 25 25 H 1.08999 * 109.47038 * 120.00681 * 2 1 3 26 26 H 1.08001 * 120.72487 * 359.95876 * 4 3 2 27 27 H 1.09001 * 109.47344 * 269.98128 * 6 5 4 28 28 H 1.09001 * 109.47291 * 29.98041 * 6 5 4 29 29 H 1.08998 * 109.46861 * 149.98654 * 6 5 4 30 30 H 1.09006 * 109.47173 * 90.00739 * 10 9 8 31 31 H 1.09000 * 109.46892 * 210.00134 * 10 9 8 32 32 H 1.08999 * 109.47282 * 330.00273 * 10 9 8 33 33 H 1.08996 * 109.46902 * 209.99895 * 11 9 8 34 34 H 1.09010 * 109.46523 * 329.99553 * 11 9 8 35 35 H 0.97004 * 120.00264 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9132 1.8534 0.9792 5 6 3.3513 3.1676 0.9424 6 6 4.3094 3.6816 1.9858 7 7 2.9182 3.9656 -0.0198 8 6 2.0762 3.5207 -0.9408 9 7 1.6437 4.3827 -1.9336 10 6 0.7131 3.9086 -2.9609 11 6 2.1173 5.7688 -1.9577 12 6 3.3765 5.8552 -2.7812 13 1 3.7830 4.9666 -3.2411 14 6 4.0088 7.0689 -2.9485 15 7 3.5135 8.1511 -2.3890 16 14 5.5691 7.1762 -3.9699 17 1 5.2156 7.4462 -5.3868 18 1 6.4235 8.2760 -3.4546 19 1 6.3085 5.8914 -3.8806 20 7 1.6386 2.2700 -0.9344 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.2505 1.1809 1.7540 27 1 3.7473 4.0868 2.8273 28 1 4.9426 2.8646 2.3317 29 1 4.9313 4.4654 1.5534 30 1 -0.3114 4.0718 -2.6264 31 1 0.8844 4.4570 -3.8872 32 1 0.8739 2.8445 -3.1336 33 1 1.3509 6.4070 -2.3974 34 1 2.3254 6.0993 -0.9399 35 1 3.9582 9.0051 -2.5070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613262421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:30 Heat of formation + Delta-G solvation = 27.526785 kcal Electronic energy + Delta-G solvation = -16539.835914 eV Core-core repulsion = 13958.149926 eV Total energy + Delta-G solvation = -2581.685988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81900 -37.90141 -36.04421 -34.91012 -33.49239 -31.66538 -29.94645 -28.93115 -27.20413 -25.43238 -24.82211 -22.18417 -21.67348 -18.68575 -18.39448 -17.83425 -16.59916 -16.32530 -16.14363 -15.31194 -15.29371 -14.85758 -14.72530 -14.17851 -14.08308 -13.67899 -13.34396 -13.21514 -13.12389 -12.94922 -12.74826 -12.57330 -12.31277 -12.17452 -12.02767 -11.78936 -11.54157 -11.07374 -10.69165 -10.63001 -9.78259 -8.68414 -8.14223 -6.34638 0.40692 0.45739 1.35402 1.37054 1.47790 2.05075 2.38857 3.06704 3.08434 3.33720 3.58567 3.83985 4.33259 4.38450 4.41097 4.47365 4.57283 4.64029 4.65875 4.77466 4.85042 4.88285 4.93350 5.04359 5.06518 5.18833 5.21004 5.25656 5.44760 5.61217 5.73359 6.04276 6.15650 6.27587 6.69883 6.83007 7.32700 7.63288 8.85971 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027852 B = 0.007155 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.061781 B = 3912.512749 C = 4437.355916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C 0.199 3.801 4 C -0.301 4.301 5 C 0.190 3.810 6 C -0.098 4.098 7 N -0.601 5.601 8 C 0.552 3.448 9 N -0.588 5.588 10 C 0.113 3.887 11 C 0.278 3.722 12 C -0.535 4.535 13 H 0.041 0.959 14 C 0.014 3.986 15 N -0.925 5.925 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.278 1.278 20 N -0.591 5.591 21 H 0.045 0.955 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.175 0.825 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -15.377 7.044 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C 0.051 3.949 4 C -0.326 4.326 5 C 0.042 3.958 6 C -0.155 4.155 7 N -0.325 5.325 8 C 0.197 3.803 9 N -0.302 5.302 10 C -0.030 4.030 11 C 0.157 3.843 12 C -0.573 4.573 13 H 0.059 0.941 14 C -0.185 4.185 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.203 1.203 20 N -0.317 5.317 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.131 0.869 26 H 0.193 0.807 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.799 -14.388 6.160 15.900 hybrid contribution 0.977 0.276 -0.093 1.019 sum -1.822 -14.112 6.067 15.469 Atomic orbital electron populations 1.21605 0.93755 1.02705 1.01400 1.20623 0.97164 0.87554 1.04879 1.22136 0.89048 0.96452 0.87273 1.22432 1.06782 0.97898 1.05525 1.22159 0.91922 0.90455 0.91241 1.20814 0.96868 1.02698 0.95122 1.67913 1.17141 1.40487 1.06979 1.19496 0.87236 0.86107 0.87462 1.46627 1.46955 1.10823 1.25794 1.21509 0.91273 1.00387 0.89848 1.18769 0.93228 0.75788 0.96500 1.21576 1.10361 0.93758 1.31654 0.94090 1.25734 1.00787 0.94999 0.96978 1.70039 1.41655 0.99681 1.45143 0.85466 0.78988 0.77563 0.79037 1.19224 1.20085 1.20294 1.67700 1.31800 1.02444 1.29740 0.93565 0.93769 0.89695 0.89303 0.86933 0.80709 0.88764 0.87006 0.92265 0.92765 0.91544 0.90625 0.96563 0.96512 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.78 71.98 0.70 -2.01 16 2 C -0.06 -1.32 6.36 29.85 0.19 -1.13 16 3 C 0.20 6.23 6.20 42.59 0.26 6.49 16 4 C -0.30 -8.81 9.48 22.44 0.21 -8.60 16 5 C 0.19 6.89 6.82 42.57 0.29 7.18 16 6 C -0.10 -2.66 10.22 71.24 0.73 -1.93 16 7 N -0.60 -28.45 9.05 -186.04 -1.68 -30.14 16 8 C 0.55 25.97 8.17 261.49 2.14 28.11 16 9 N -0.59 -28.75 2.96 -740.21 -2.19 -30.94 16 10 C 0.11 4.45 10.44 127.77 1.33 5.78 16 11 C 0.28 15.72 5.16 85.63 0.44 16.17 16 12 C -0.53 -31.82 9.39 25.60 0.24 -31.58 16 13 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.01 0.82 5.46 84.65 0.46 1.29 16 15 N -0.93 -56.14 13.29 21.44 0.28 -55.85 16 16 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 20 N -0.59 -23.47 8.71 -186.03 -1.62 -25.09 16 21 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 22 H 0.04 1.07 7.98 -2.39 -0.02 1.06 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 26 H 0.18 3.41 8.01 -2.91 -0.02 3.39 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.11 2.11 8.09 -2.39 -0.02 2.09 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.08 2.79 7.33 -2.39 -0.02 2.77 16 33 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 34 H 0.02 1.04 7.33 -2.38 -0.02 1.03 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -73.01 300.15 4.88 -68.13 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.06 Total: 6.38 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 7.00 Total: 19.76 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -5.21 Total: -142.02 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.01 4.88 -68.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613262421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.658 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds