Wall clock time and date at job start Sun Mar 29 2020 21:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46834 * 2 1 4 4 N 1.31945 * 120.05519 * 90.62889 * 3 2 1 5 5 C 1.32242 * 120.08652 * 180.02562 * 4 3 2 6 6 C 1.38204 * 120.19095 * 0.02562 * 5 4 3 7 7 N 1.32223 * 120.10228 * 359.97438 * 6 5 4 8 8 C 1.32675 * 119.91458 * 0.02562 * 7 6 5 9 9 N 1.38996 * 120.09812 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00171 * 308.09873 * 9 8 7 11 11 C 1.52996 * 109.47096 * 292.49077 * 10 9 8 12 12 C 1.46899 * 110.99815 * 72.05222 * 9 8 7 13 13 C 1.50697 * 109.47325 * 163.65747 * 12 9 8 14 14 H 1.07998 * 120.00131 * 2.83335 * 13 12 9 15 15 C 1.37882 * 120.00065 * 182.83950 * 13 12 9 16 16 N 1.31519 * 119.99889 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00186 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47294 * 89.99851 * 17 15 13 19 19 H 1.48503 * 109.47163 * 210.00501 * 17 15 13 20 20 H 1.48508 * 109.46955 * 330.00263 * 17 15 13 21 21 H 1.08998 * 109.47168 * 64.64987 * 1 2 3 22 22 H 1.09002 * 109.46758 * 184.64356 * 1 2 3 23 23 H 1.08994 * 109.47178 * 304.64235 * 1 2 3 24 24 H 1.08998 * 109.47369 * 239.99642 * 2 1 3 25 25 H 1.08999 * 109.47469 * 119.99454 * 2 1 3 26 26 H 1.08004 * 119.90530 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.95311 * 179.71890 * 6 5 4 28 28 H 1.09002 * 109.46794 * 52.49020 * 10 9 8 29 29 H 1.08998 * 109.47632 * 172.48886 * 10 9 8 30 30 H 1.09006 * 109.47014 * 185.49123 * 11 10 9 31 31 H 1.08989 * 109.47478 * 305.49595 * 11 10 9 32 32 H 1.09008 * 109.46889 * 65.49603 * 11 10 9 33 33 H 1.09004 * 109.47007 * 283.65182 * 12 9 8 34 34 H 1.09000 * 109.47394 * 43.65361 * 12 9 8 35 35 H 0.96994 * 119.99863 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2643 2.0398 1.1420 5 6 2.7046 3.2867 1.1427 6 6 2.9231 3.9473 -0.0514 7 7 2.6930 3.3344 -1.2002 8 6 2.2513 2.0833 -1.2057 9 7 2.0076 1.4355 -2.4111 10 6 1.1374 2.2430 -3.2763 11 6 -0.2590 2.3293 -2.6572 12 6 3.2653 1.1022 -3.0931 13 6 2.9998 0.0735 -4.1619 14 1 1.9906 -0.2620 -4.3497 15 6 4.0454 -0.4394 -4.9000 16 7 3.8138 -1.3376 -5.8324 17 14 5.7910 0.1412 -4.5756 18 1 6.4181 -0.7264 -3.5465 19 1 6.5788 0.0675 -5.8322 20 1 5.7637 1.5444 -4.0901 21 1 -0.3633 0.4400 -0.9287 22 1 -0.3633 -1.0243 0.0832 23 1 -0.3633 0.5841 0.8454 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 2.8940 3.7904 2.0792 27 1 3.2784 4.9672 -0.0463 28 1 1.5534 3.2456 -3.3758 29 1 1.0707 1.7782 -4.2600 30 1 -0.9299 2.8448 -3.3445 31 1 -0.6352 1.3241 -2.4676 32 1 -0.2067 2.8808 -1.7184 33 1 3.6805 2.0010 -3.5491 34 1 3.9752 0.7003 -2.3703 35 1 4.5493 -1.6982 -6.3518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699508339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:24 Heat of formation + Delta-G solvation = 51.740812 kcal Electronic energy + Delta-G solvation = -17082.968641 eV Core-core repulsion = 14502.332652 eV Total energy + Delta-G solvation = -2580.635989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99174 -37.14871 -34.64977 -32.90711 -32.26924 -30.65648 -29.42725 -26.93215 -24.76949 -23.79319 -22.20846 -21.46250 -20.41405 -17.62382 -17.02237 -16.20001 -15.63640 -15.35461 -14.39386 -14.04890 -13.81282 -13.58790 -13.43656 -13.20609 -12.52251 -12.46919 -12.09304 -11.55649 -11.33650 -11.26390 -11.14174 -10.94014 -10.68659 -10.59679 -10.46639 -10.41605 -10.04443 -9.48267 -8.85304 -8.65793 -8.63614 -7.76729 -6.12080 -4.10401 1.06172 1.41672 3.24542 3.32376 3.36214 3.92498 4.11207 4.36636 4.42553 4.64416 4.87337 5.18681 5.24041 5.42257 5.46766 5.60952 5.71174 5.76850 5.79027 5.92535 6.00543 6.21067 6.26246 6.38564 6.46429 6.54066 6.70807 6.71009 6.79142 6.86389 7.46912 7.52512 7.66461 7.90979 8.13297 8.53951 8.95818 9.48579 11.00402 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.008820 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.166762 B = 3173.675686 C = 3455.392568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C 0.107 3.893 4 N -0.439 5.439 5 C 0.024 3.976 6 C 0.049 3.951 7 N -0.472 5.472 8 C 0.274 3.726 9 N -0.470 5.470 10 C 0.058 3.942 11 C -0.146 4.146 12 C 0.172 3.828 13 C -0.511 4.511 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.869 3.131 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.268 1.268 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.162 0.838 27 H 0.160 0.840 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.004 0.996 34 H 0.020 0.980 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 7.762 11.289 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.037 4.037 4 N -0.154 5.154 5 C -0.134 4.134 6 C -0.112 4.112 7 N -0.190 5.190 8 C 0.042 3.958 9 N -0.194 5.194 10 C -0.069 4.069 11 C -0.204 4.204 12 C 0.048 3.952 13 C -0.549 4.549 14 H 0.104 0.896 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.696 3.304 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.180 0.820 27 H 0.177 0.823 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.038 0.962 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.557 7.220 11.224 14.102 hybrid contribution 1.600 1.199 -0.006 1.999 sum -2.958 8.419 11.218 14.335 Atomic orbital electron populations 1.21731 0.94345 1.01754 1.02077 1.20373 0.96390 0.89326 1.04110 1.22140 0.95730 0.98277 0.87523 1.68233 1.09126 1.08871 1.29164 1.23516 0.98666 0.91822 0.99436 1.23513 0.98010 1.00952 0.88696 1.68635 1.09240 1.10918 1.30182 1.21150 0.92033 0.88154 0.94476 1.60353 1.17906 1.39102 1.02068 1.22056 0.91504 0.95917 0.97394 1.21873 0.96960 1.01854 0.99701 1.20213 0.84863 0.96406 0.93729 1.20923 0.96581 1.21678 1.15707 0.89647 1.24821 0.98579 0.94611 0.94840 1.69872 1.32167 1.28841 1.22452 0.86955 0.85531 0.79861 0.78064 1.20093 1.20943 1.19267 0.91492 0.92136 0.93582 0.87746 0.91009 0.82034 0.82323 0.94070 0.88595 0.92565 0.91488 0.94500 0.97862 0.96184 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 37.16 0.37 -1.61 16 2 C -0.06 -1.02 5.99 -27.88 -0.17 -1.19 16 3 C 0.11 1.89 6.07 -82.15 -0.50 1.39 16 4 N -0.44 -7.14 10.41 -9.12 -0.09 -7.24 16 5 C 0.02 0.33 11.21 -17.39 -0.19 0.13 16 6 C 0.05 0.71 11.22 -17.40 -0.20 0.51 16 7 N -0.47 -8.68 9.60 -12.24 -0.12 -8.80 16 8 C 0.27 5.27 4.28 -154.73 -0.66 4.61 16 9 N -0.47 -9.79 3.41 -174.43 -0.59 -10.38 16 10 C 0.06 1.11 5.43 -3.83 -0.02 1.09 16 11 C -0.15 -2.30 9.38 37.16 0.35 -1.95 16 12 C 0.17 4.18 3.73 -4.98 -0.02 4.16 16 13 C -0.51 -14.01 9.04 -34.44 -0.31 -14.32 16 14 H 0.09 2.51 7.77 -52.49 -0.41 2.10 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 17 Si 0.87 21.41 27.41 -169.99 -4.66 16.75 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.53 6.63 56.52 0.37 -6.15 16 21 H 0.07 0.99 5.56 -51.93 -0.29 0.70 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.10 1.90 7.49 -51.93 -0.39 1.51 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.04 0.80 7.48 -51.93 -0.39 0.41 16 29 H 0.10 1.97 7.07 -51.93 -0.37 1.60 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.04 6.14 -51.94 -0.32 0.72 16 32 H 0.04 0.58 7.61 -51.92 -0.40 0.19 16 33 H 0.00 0.09 7.30 -51.93 -0.38 -0.29 16 34 H 0.02 0.50 7.24 -51.93 -0.38 0.13 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 287.99 15.07 4.34 4.34 Total: -1.00 -30.56 287.99 -6.81 -37.37 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.01 Total: -0.91 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.45 Total: -5.19 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.03 Total: -52.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.66 Total: 16.75 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.56 -6.81 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.108 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds