Wall clock time and date at job start Sun Mar 29 2020 21:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46834 * 2 1 4 4 N 1.31945 * 120.05519 * 90.62889 * 3 2 1 5 5 C 1.32242 * 120.08652 * 180.02562 * 4 3 2 6 6 C 1.38204 * 120.19095 * 0.02562 * 5 4 3 7 7 N 1.32223 * 120.10228 * 359.97438 * 6 5 4 8 8 C 1.32675 * 119.91458 * 0.02562 * 7 6 5 9 9 N 1.38996 * 120.09812 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00171 * 308.09873 * 9 8 7 11 11 C 1.52996 * 109.47096 * 292.49077 * 10 9 8 12 12 C 1.46899 * 110.99815 * 72.05222 * 9 8 7 13 13 C 1.50697 * 109.47325 * 163.65747 * 12 9 8 14 14 H 1.07998 * 120.00131 * 2.83335 * 13 12 9 15 15 C 1.37882 * 120.00065 * 182.83950 * 13 12 9 16 16 N 1.31519 * 119.99889 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00186 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47294 * 89.99851 * 17 15 13 19 19 H 1.48503 * 109.47163 * 210.00501 * 17 15 13 20 20 H 1.48508 * 109.46955 * 330.00263 * 17 15 13 21 21 H 1.08998 * 109.47168 * 64.64987 * 1 2 3 22 22 H 1.09002 * 109.46758 * 184.64356 * 1 2 3 23 23 H 1.08994 * 109.47178 * 304.64235 * 1 2 3 24 24 H 1.08998 * 109.47369 * 239.99642 * 2 1 3 25 25 H 1.08999 * 109.47469 * 119.99454 * 2 1 3 26 26 H 1.08004 * 119.90530 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.95311 * 179.71890 * 6 5 4 28 28 H 1.09002 * 109.46794 * 52.49020 * 10 9 8 29 29 H 1.08998 * 109.47632 * 172.48886 * 10 9 8 30 30 H 1.09006 * 109.47014 * 185.49123 * 11 10 9 31 31 H 1.08989 * 109.47478 * 305.49595 * 11 10 9 32 32 H 1.09008 * 109.46889 * 65.49603 * 11 10 9 33 33 H 1.09004 * 109.47007 * 283.65182 * 12 9 8 34 34 H 1.09000 * 109.47394 * 43.65361 * 12 9 8 35 35 H 0.96994 * 119.99863 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2643 2.0398 1.1420 5 6 2.7046 3.2867 1.1427 6 6 2.9231 3.9473 -0.0514 7 7 2.6930 3.3344 -1.2002 8 6 2.2513 2.0833 -1.2057 9 7 2.0076 1.4355 -2.4111 10 6 1.1374 2.2430 -3.2763 11 6 -0.2590 2.3293 -2.6572 12 6 3.2653 1.1022 -3.0931 13 6 2.9998 0.0735 -4.1619 14 1 1.9906 -0.2620 -4.3497 15 6 4.0454 -0.4394 -4.9000 16 7 3.8138 -1.3376 -5.8324 17 14 5.7910 0.1412 -4.5756 18 1 6.4181 -0.7264 -3.5465 19 1 6.5788 0.0675 -5.8322 20 1 5.7637 1.5444 -4.0901 21 1 -0.3633 0.4400 -0.9287 22 1 -0.3633 -1.0243 0.0832 23 1 -0.3633 0.5841 0.8454 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 2.8940 3.7904 2.0792 27 1 3.2784 4.9672 -0.0463 28 1 1.5534 3.2456 -3.3758 29 1 1.0707 1.7782 -4.2600 30 1 -0.9299 2.8448 -3.3445 31 1 -0.6352 1.3241 -2.4676 32 1 -0.2067 2.8808 -1.7184 33 1 3.6805 2.0010 -3.5491 34 1 3.9752 0.7003 -2.3703 35 1 4.5493 -1.6982 -6.3518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699508339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:23 Heat of formation + Delta-G solvation = 31.368263 kcal Electronic energy + Delta-G solvation = -17083.852061 eV Core-core repulsion = 14502.332652 eV Total energy + Delta-G solvation = -2581.519409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27635 -38.67026 -35.89370 -34.89037 -33.69894 -32.15549 -30.90305 -28.64244 -25.97762 -25.18354 -24.03211 -22.68365 -21.99408 -19.26565 -18.66400 -17.65073 -17.05386 -16.86718 -16.10289 -15.42718 -15.28020 -15.04123 -14.77757 -14.53233 -14.47952 -14.04214 -13.31770 -13.12728 -12.89903 -12.73316 -12.57927 -12.40469 -12.26750 -12.16106 -11.96429 -11.86411 -11.67030 -11.60046 -10.82370 -10.23500 -9.90796 -9.33595 -8.32074 -6.34958 -0.16694 0.16376 1.28607 1.30618 1.40413 2.28877 2.66988 2.73719 3.00923 3.24914 3.40294 3.65718 4.04250 4.19958 4.24545 4.39568 4.40168 4.51927 4.55771 4.59459 4.69451 4.78495 4.88121 4.93109 5.09529 5.11834 5.18222 5.22661 5.43280 5.46671 5.52014 5.85480 6.19024 6.33487 6.58182 6.70659 6.88140 7.27566 8.83654 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.008820 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.166762 B = 3173.675686 C = 3455.392568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C 0.097 3.903 4 N -0.449 5.449 5 C 0.044 3.956 6 C 0.051 3.949 7 N -0.498 5.498 8 C 0.241 3.759 9 N -0.474 5.474 10 C 0.060 3.940 11 C -0.131 4.131 12 C 0.190 3.810 13 C -0.510 4.510 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.937 5.937 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.264 1.264 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.212 0.788 27 H 0.201 0.799 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.038 0.962 33 H -0.010 1.010 34 H 0.013 0.987 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 9.606 13.708 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.045 4.045 4 N -0.164 5.164 5 C -0.116 4.116 6 C -0.111 4.111 7 N -0.216 5.216 8 C 0.011 3.989 9 N -0.197 5.197 10 C -0.067 4.067 11 C -0.189 4.189 12 C 0.064 3.936 13 C -0.549 4.549 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.577 5.577 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.188 1.188 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.228 0.772 27 H 0.218 0.782 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.007 0.993 34 H 0.031 0.969 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.070 9.038 13.640 16.861 hybrid contribution 1.399 0.745 -0.638 1.708 sum -2.672 9.783 13.002 16.489 Atomic orbital electron populations 1.21675 0.92835 1.02837 1.01803 1.20332 0.97713 0.88881 1.03166 1.22181 0.96110 0.98694 0.87500 1.68323 1.09705 1.10223 1.28189 1.24353 0.95350 0.90660 1.01207 1.24250 0.96637 1.02457 0.87743 1.68547 1.09824 1.10713 1.32539 1.20977 0.95100 0.89088 0.93759 1.60159 1.16250 1.40616 1.02708 1.22020 0.93280 0.94875 0.96480 1.21739 0.94985 1.02181 0.99953 1.19816 0.86605 0.94534 0.92661 1.21070 0.95179 1.22064 1.16540 0.92969 1.25619 1.02856 0.94746 0.94603 1.70000 1.33624 1.30383 1.23720 0.85925 0.80443 0.79520 0.78350 1.19125 1.20052 1.18821 0.92630 0.90603 0.92643 0.90676 0.89819 0.77151 0.78223 0.94673 0.91174 0.90329 0.91559 0.94307 0.99262 0.96888 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.89 71.98 0.71 -2.93 16 2 C -0.06 -1.99 5.99 29.85 0.18 -1.81 16 3 C 0.10 3.30 6.07 42.80 0.26 3.56 16 4 N -0.45 -13.33 10.41 -182.76 -1.90 -15.23 16 5 C 0.04 1.01 11.21 84.62 0.95 1.96 16 6 C 0.05 1.27 11.22 84.63 0.95 2.22 16 7 N -0.50 -17.50 9.60 -192.64 -1.85 -19.35 16 8 C 0.24 9.14 4.28 133.02 0.57 9.71 16 9 N -0.47 -20.20 3.41 -705.79 -2.40 -22.60 16 10 C 0.06 2.37 5.43 86.30 0.47 2.84 16 11 C -0.13 -4.08 9.38 71.98 0.67 -3.41 16 12 C 0.19 9.44 3.73 85.56 0.32 9.76 16 13 C -0.51 -29.17 9.04 25.60 0.23 -28.94 16 14 H 0.05 3.26 7.77 -2.91 -0.02 3.23 16 15 C 0.02 1.18 5.47 84.66 0.46 1.64 16 16 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 17 Si 0.93 44.69 27.41 68.60 1.88 46.58 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -12.35 6.63 99.48 0.66 -11.69 16 21 H 0.05 1.63 5.56 -2.39 -0.01 1.61 16 22 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 2.83 7.49 -2.39 -0.02 2.81 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 27 H 0.20 3.21 8.06 -2.91 -0.02 3.18 16 28 H 0.03 1.39 7.48 -2.39 -0.02 1.37 16 29 H 0.07 3.05 7.07 -2.39 -0.02 3.04 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.07 6.14 -2.39 -0.01 2.05 16 32 H 0.04 1.18 7.61 -2.38 -0.02 1.17 16 33 H -0.01 -0.54 7.30 -2.38 -0.02 -0.56 16 34 H 0.01 0.66 7.24 -2.39 -0.02 0.65 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -67.99 287.99 2.82 -65.18 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.02 Total: 8.07 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.77 Total: -5.39 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -5.86 Total: -114.43 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -67.99 2.82 -65.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699508339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.544 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds