Wall clock time and date at job start Sun Mar 29 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38604 * 120.44353 * 2 1 4 4 C 1.38596 * 118.39563 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.44321 * 179.97438 * 4 3 2 6 6 N 1.32330 * 119.11041 * 0.02562 * 4 3 2 7 7 C 1.31800 * 120.81679 * 359.97438 * 6 4 3 8 8 C 1.50696 * 119.12392 * 179.97438 * 7 6 4 9 9 N 1.46906 * 109.47351 * 89.99645 * 8 7 6 10 10 C 1.46901 * 110.99793 * 293.95574 * 9 8 7 11 11 C 1.46898 * 110.99820 * 169.99890 * 9 8 7 12 12 C 1.50706 * 109.46563 * 189.99919 * 11 9 8 13 13 H 1.07998 * 120.00168 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99248 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00492 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99607 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46966 * 59.99815 * 16 14 12 18 18 H 1.48494 * 109.47295 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47379 * 300.00094 * 16 14 12 20 20 N 1.31797 * 121.75084 * 0.25327 * 7 6 4 21 21 H 1.09002 * 109.47301 * 89.99863 * 1 2 3 22 22 H 1.09008 * 109.46912 * 209.99687 * 1 2 3 23 23 H 1.08997 * 109.47350 * 329.98968 * 1 2 3 24 24 H 1.07998 * 120.79816 * 0.04927 * 3 2 1 25 25 H 1.08994 * 109.47218 * 270.02470 * 5 4 3 26 26 H 1.08995 * 109.47217 * 30.02840 * 5 4 3 27 27 H 1.09000 * 109.47010 * 150.02593 * 5 4 3 28 28 H 1.08997 * 109.47055 * 329.99701 * 8 7 6 29 29 H 1.09001 * 109.47156 * 209.99470 * 8 7 6 30 30 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 31 31 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 32 32 H 1.09004 * 109.46970 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.47410 * 309.99936 * 11 9 8 34 34 H 1.08999 * 109.47216 * 70.00266 * 11 9 8 35 35 H 0.97001 * 120.00000 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2093 1.1949 0.0000 4 6 3.5943 1.1454 -0.0005 5 6 4.4039 2.4166 -0.0012 6 7 4.1964 -0.0330 -0.0016 7 6 3.4956 -1.1492 -0.0015 8 6 4.2206 -2.4704 -0.0033 9 7 4.4578 -2.9007 1.3811 10 6 5.3893 -1.9918 2.0626 11 6 4.9460 -4.2854 1.4256 12 6 4.9441 -4.7730 2.8516 13 1 4.6137 -4.1195 3.6454 14 6 5.3652 -6.0532 3.1429 15 7 5.7690 -6.8485 2.1765 16 14 5.3622 -6.6580 4.9103 17 1 3.9796 -6.6035 5.4497 18 1 5.8558 -8.0577 4.9554 19 1 6.2480 -5.7935 5.7309 20 7 2.1777 -1.1407 -0.0055 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5140 24 1 1.6897 2.1417 0.0008 25 1 4.5983 2.7231 -1.0289 26 1 3.8488 3.2011 0.5131 27 1 5.3501 2.2449 0.5119 28 1 5.1749 -2.3604 -0.5182 29 1 3.6145 -3.2167 -0.5169 30 1 4.9705 -0.9855 2.0762 31 1 6.3411 -1.9820 1.5316 32 1 5.5469 -2.3332 3.0857 33 1 4.2952 -4.9197 0.8239 34 1 5.9606 -4.3259 1.0292 35 1 6.0649 -7.7493 2.3814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700509293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:40 Heat of formation + Delta-G solvation = 21.988376 kcal Electronic energy + Delta-G solvation = -16215.987020 eV Core-core repulsion = 13634.060869 eV Total energy + Delta-G solvation = -2581.926151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12975 -38.38192 -35.73068 -35.02116 -34.04364 -30.28373 -29.88332 -28.76653 -28.24630 -26.23119 -23.51145 -22.61310 -21.92674 -18.70880 -18.56006 -17.09724 -16.67643 -16.51296 -16.12231 -15.85637 -15.47921 -14.87218 -14.29684 -14.11267 -14.03380 -13.73107 -13.45162 -13.32886 -13.25178 -12.96784 -12.86380 -12.66569 -12.59922 -12.41686 -12.01358 -11.68991 -11.33473 -11.21781 -10.62632 -10.26527 -10.18390 -9.15077 -8.21195 -6.31710 -0.09135 0.17015 1.40821 1.44714 1.52688 2.38852 2.60771 2.88326 3.10829 3.12521 3.46896 3.52983 4.03284 4.14459 4.27646 4.34449 4.47675 4.50174 4.57154 4.66242 4.73680 4.75756 4.80112 4.94932 4.99796 5.03170 5.12361 5.20205 5.21219 5.57369 5.61441 5.98473 6.16387 6.23190 6.48642 6.81550 7.21465 7.37262 8.90021 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035287 B = 0.005354 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.293693 B = 5228.963487 C = 5498.039431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.156 3.844 3 C -0.226 4.226 4 C 0.157 3.843 5 C -0.099 4.099 6 N -0.543 5.543 7 C 0.331 3.669 8 C 0.122 3.878 9 N -0.541 5.541 10 C 0.053 3.947 11 C 0.210 3.790 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.972 3.028 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.267 1.267 20 N -0.541 5.541 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.188 0.812 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.009 0.991 34 H -0.030 1.030 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 19.732 -4.756 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.011 3.989 3 C -0.247 4.247 4 C 0.012 3.988 5 C -0.156 4.156 6 N -0.260 5.260 7 C 0.062 3.938 8 C -0.007 4.007 9 N -0.266 5.266 10 C -0.095 4.095 11 C 0.085 3.915 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.192 1.192 20 N -0.258 5.258 21 H 0.118 0.882 22 H 0.088 0.912 23 H 0.129 0.871 24 H 0.205 0.795 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.027 0.973 34 H -0.012 1.012 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.677 18.719 -4.557 20.739 hybrid contribution 0.636 -0.246 0.163 0.701 sum -7.040 18.473 -4.394 20.252 Atomic orbital electron populations 1.20878 0.85271 1.04890 1.04702 1.22529 0.99436 0.87958 0.88998 1.22966 0.95203 1.01436 1.05119 1.22517 0.93000 0.94317 0.89007 1.20873 0.99603 0.90399 1.04723 1.68128 1.42498 0.99110 1.16310 1.22728 0.86899 0.93752 0.90393 1.20670 0.97785 0.90701 0.91571 1.61985 1.47595 1.03991 1.13033 1.22083 0.93120 0.95319 0.98975 1.19415 0.91724 0.83434 0.96968 1.21364 1.43248 0.98666 0.93240 0.92198 1.25905 0.94594 0.96637 1.02267 1.70073 1.44722 1.08280 1.34177 0.85401 0.78803 0.77275 0.78907 1.19468 1.20474 1.19192 1.68089 1.09685 1.32368 1.15674 0.88227 0.91179 0.87133 0.79467 0.88289 0.87230 0.90850 0.93131 0.89673 0.92335 0.96544 0.92172 0.97308 1.01230 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.22 71.23 0.73 -0.99 16 2 C 0.16 4.10 6.82 42.57 0.29 4.39 16 3 C -0.23 -4.74 9.54 22.44 0.21 -4.52 16 4 C 0.16 3.91 6.82 42.57 0.29 4.20 16 5 C -0.10 -1.51 10.22 71.24 0.73 -0.78 16 6 N -0.54 -18.47 9.18 -176.02 -1.62 -20.09 16 7 C 0.33 12.65 6.42 138.75 0.89 13.54 16 8 C 0.12 5.23 5.40 85.55 0.46 5.69 16 9 N -0.54 -26.39 4.74 -931.64 -4.42 -30.81 16 10 C 0.05 2.37 9.10 127.69 1.16 3.53 16 11 C 0.21 11.93 4.72 85.56 0.40 12.33 16 12 C -0.53 -31.26 8.46 25.60 0.22 -31.05 16 13 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 16 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 N -0.54 -19.59 10.27 -176.02 -1.81 -21.40 16 21 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.11 1.14 8.10 -2.39 -0.02 1.12 16 24 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 29 H 0.08 3.67 7.93 -2.39 -0.02 3.65 16 30 H 0.06 2.40 6.55 -2.39 -0.02 2.39 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 2.78 6.76 -2.38 -0.02 2.77 16 33 H 0.01 0.53 7.93 -2.39 -0.02 0.51 16 34 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -73.32 297.33 1.38 -71.95 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.06 Total: 2.89 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.85 Total: 7.06 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -7.56 Total: -129.33 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -73.32 1.38 -71.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700509293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.935 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds