Wall clock time and date at job start Sun Mar 29 2020 22:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 H 1.09007 * 109.47120 * 55.02398 * 3 2 1 5 5 C 1.50703 * 109.47104 * 175.02578 * 3 2 1 6 6 H 1.08000 * 119.99915 * 120.00400 * 5 3 2 7 7 C 1.37877 * 119.99787 * 299.99261 * 5 3 2 8 8 N 1.31516 * 120.00234 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47302 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47232 * 120.00470 * 9 7 5 12 12 H 1.48509 * 109.47385 * 240.00627 * 9 7 5 13 13 N 1.46896 * 109.46987 * 295.02606 * 3 2 1 14 14 C 1.46905 * 111.00302 * 167.16529 * 13 3 2 15 15 C 1.46901 * 110.99893 * 291.11481 * 13 3 2 16 16 C 1.50709 * 109.47244 * 164.00541 * 15 13 3 17 17 C 1.38387 * 119.99576 * 95.02111 * 16 15 13 18 18 N 1.32125 * 119.99488 * 179.72308 * 17 16 15 19 19 C 1.32155 * 119.99794 * 0.51261 * 18 17 16 20 20 C 1.38340 * 120.00280 * 359.48918 * 19 18 17 21 21 N 1.32124 * 120.00233 * 275.00155 * 16 15 13 22 22 H 1.08997 * 109.47541 * 295.20843 * 1 2 3 23 23 H 1.08999 * 109.47134 * 55.20868 * 1 2 3 24 24 H 1.08999 * 109.47284 * 175.20592 * 1 2 3 25 25 H 1.08998 * 109.47467 * 239.99513 * 2 1 3 26 26 H 1.09003 * 109.46792 * 119.99285 * 2 1 3 27 27 H 0.97002 * 119.99696 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46935 * 183.95197 * 14 13 3 29 29 H 1.09006 * 109.46577 * 303.94816 * 14 13 3 30 30 H 1.08998 * 109.47187 * 63.94988 * 14 13 3 31 31 H 1.09003 * 109.47388 * 44.00775 * 15 13 3 32 32 H 1.08998 * 109.47111 * 284.00812 * 15 13 3 33 33 H 1.07999 * 120.00432 * 359.97438 * 17 16 15 34 34 H 1.08002 * 119.99855 * 179.77087 * 19 18 17 35 35 H 1.08000 * 119.99937 * 180.27455 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4442 0.1232 6 1 4.1469 1.8890 -0.6531 7 6 4.1437 0.8783 1.2271 8 7 3.4071 0.3365 2.1723 9 14 6.0054 0.8811 1.3801 10 1 6.5988 1.5472 0.1929 11 1 6.4000 1.6164 2.6085 12 1 6.4977 -0.5177 1.4609 13 7 1.6508 2.0994 -1.2549 14 6 1.8491 3.5527 -1.1720 15 6 2.3834 1.5325 -2.3951 16 6 1.7010 1.9303 -3.6786 17 6 2.1358 3.0430 -4.3772 18 7 1.5411 3.3886 -5.5053 19 6 0.5247 2.6775 -5.9612 20 6 0.0901 1.5653 -5.2628 21 7 0.6881 1.2165 -4.1371 22 1 -0.3634 0.4377 0.9297 23 1 -0.3633 0.5864 -0.8439 24 1 -0.3634 -1.0240 -0.0859 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8305 -0.0620 2.9487 28 1 1.4880 4.0214 -2.0875 29 1 1.2959 3.9467 -0.3194 30 1 2.9103 3.7681 -1.0476 31 1 2.3982 0.4456 -2.3133 32 1 3.4056 1.9108 -2.3946 33 1 2.9637 3.6265 -4.0024 34 1 0.0362 2.9622 -6.8814 35 1 -0.7377 0.9816 -5.6377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704218416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:31 Heat of formation + Delta-G solvation = 50.340487 kcal Electronic energy + Delta-G solvation = -16867.527262 eV Core-core repulsion = 14286.830551 eV Total energy + Delta-G solvation = -2580.696712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82658 -37.32632 -34.07912 -33.12649 -31.63536 -30.88998 -27.10192 -26.84090 -24.59528 -23.96405 -22.71243 -21.39473 -19.03392 -17.31276 -16.83269 -16.51693 -15.65226 -15.03843 -14.62944 -14.15605 -13.67571 -13.57936 -12.99032 -12.68046 -12.23787 -11.91555 -11.53732 -11.38187 -11.22483 -11.12040 -11.00012 -10.90764 -10.71438 -10.57427 -10.07410 -9.62021 -9.51103 -9.15803 -8.98989 -8.76947 -8.38517 -7.23334 -6.02948 -4.16949 0.98848 1.37628 3.23452 3.32609 3.34597 3.90276 4.29464 4.36143 4.48408 4.71450 4.99501 5.18940 5.24329 5.45828 5.56875 5.64952 6.03267 6.14903 6.34055 6.42588 6.50247 6.54586 6.62509 6.65132 6.74601 7.13573 7.22458 7.34800 7.50270 7.57401 7.73827 7.89298 8.04619 8.09622 8.25321 8.41251 8.92242 9.51139 10.96622 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.007323 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.230981 B = 3822.737822 C = 4310.455076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.215 3.785 4 H 0.041 0.959 5 C -0.547 4.547 6 H 0.058 0.942 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.529 5.529 14 C 0.031 3.969 15 C 0.110 3.890 16 C 0.111 3.889 17 C 0.047 3.953 18 N -0.442 5.442 19 C 0.026 3.974 20 C 0.049 3.951 21 N -0.422 5.422 22 H 0.035 0.965 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 2.747 -10.902 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.109 3.891 4 H 0.059 0.941 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.252 5.252 14 C -0.118 4.118 15 C -0.020 4.020 16 C -0.030 4.030 17 C -0.113 4.113 18 N -0.157 5.157 19 C -0.134 4.134 20 C -0.111 4.111 21 N -0.138 5.138 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.654 2.563 -10.781 12.020 hybrid contribution 1.838 0.169 0.254 1.863 sum -2.816 2.732 -10.527 11.235 Atomic orbital electron populations 1.21702 0.98786 0.98644 1.00447 1.21581 0.92411 0.98912 1.01835 1.19343 0.93219 0.91470 0.85065 0.94096 1.21771 0.92653 1.38462 1.05755 0.92428 1.24906 0.97869 0.94918 0.95626 1.69887 1.34770 1.38033 1.09403 0.86623 0.86090 0.77776 0.78003 1.19911 1.21023 1.20948 1.62399 1.55400 1.02833 1.04613 1.22236 0.99701 0.89938 0.99913 1.20852 0.93746 1.02035 0.85325 1.22726 0.91799 0.91354 0.97140 1.23637 1.00065 0.95949 0.91684 1.68385 1.06802 1.28624 1.11894 1.23618 0.94879 0.93843 1.01030 1.23780 0.99441 0.95983 0.91913 1.68395 1.05741 1.29137 1.10490 0.94557 0.92960 0.95606 0.94817 0.88987 0.92866 0.94143 0.92303 0.95097 0.88617 0.92526 0.81884 0.82048 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.86 37.16 0.37 -2.52 16 2 C -0.11 -2.56 5.22 -26.73 -0.14 -2.70 16 3 C 0.21 5.14 1.69 -68.87 -0.12 5.02 16 4 H 0.04 1.09 7.96 -51.92 -0.41 0.68 16 5 C -0.55 -14.02 7.28 -34.44 -0.25 -14.27 16 6 H 0.06 1.46 6.00 -52.49 -0.31 1.14 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.26 11.29 55.43 0.63 -23.63 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.53 -10.91 4.01 -237.72 -0.95 -11.86 16 14 C 0.03 0.58 9.08 60.07 0.55 1.13 16 15 C 0.11 2.10 4.35 -4.97 -0.02 2.08 16 16 C 0.11 1.89 5.83 -82.41 -0.48 1.41 16 17 C 0.05 0.72 9.66 -17.37 -0.17 0.56 16 18 N -0.44 -6.51 10.50 -13.06 -0.14 -6.64 16 19 C 0.03 0.32 11.22 -17.37 -0.20 0.12 16 20 C 0.05 0.63 11.22 -17.38 -0.20 0.44 16 21 N -0.42 -7.08 10.42 -9.29 -0.10 -7.17 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 1.09 7.62 -51.93 -0.40 0.69 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.78 6.24 -51.93 -0.32 0.46 16 26 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.04 0.68 6.61 -51.93 -0.34 0.34 16 29 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.03 0.59 7.41 -51.93 -0.38 0.20 16 31 H 0.10 1.98 6.04 -51.93 -0.31 1.67 16 32 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 33 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.44 284.94 -6.84 -35.28 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.80 Total: 1.22 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.75 Total: -6.99 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.56 Total: -49.31 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.44 -6.84 -35.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704218416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.623 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds