Wall clock time and date at job start Sun Mar 29 2020 22:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 H 1.09007 * 109.47120 * 55.02398 * 3 2 1 5 5 C 1.50703 * 109.47104 * 175.02578 * 3 2 1 6 6 H 1.08000 * 119.99915 * 120.00400 * 5 3 2 7 7 C 1.37877 * 119.99787 * 299.99261 * 5 3 2 8 8 N 1.31516 * 120.00234 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47302 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47232 * 120.00470 * 9 7 5 12 12 H 1.48509 * 109.47385 * 240.00627 * 9 7 5 13 13 N 1.46896 * 109.46987 * 295.02606 * 3 2 1 14 14 C 1.46905 * 111.00302 * 167.16529 * 13 3 2 15 15 C 1.46901 * 110.99893 * 291.11481 * 13 3 2 16 16 C 1.50709 * 109.47244 * 164.00541 * 15 13 3 17 17 C 1.38387 * 119.99576 * 95.02111 * 16 15 13 18 18 N 1.32125 * 119.99488 * 179.72308 * 17 16 15 19 19 C 1.32155 * 119.99794 * 0.51261 * 18 17 16 20 20 C 1.38340 * 120.00280 * 359.48918 * 19 18 17 21 21 N 1.32124 * 120.00233 * 275.00155 * 16 15 13 22 22 H 1.08997 * 109.47541 * 295.20843 * 1 2 3 23 23 H 1.08999 * 109.47134 * 55.20868 * 1 2 3 24 24 H 1.08999 * 109.47284 * 175.20592 * 1 2 3 25 25 H 1.08998 * 109.47467 * 239.99513 * 2 1 3 26 26 H 1.09003 * 109.46792 * 119.99285 * 2 1 3 27 27 H 0.97002 * 119.99696 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46935 * 183.95197 * 14 13 3 29 29 H 1.09006 * 109.46577 * 303.94816 * 14 13 3 30 30 H 1.08998 * 109.47187 * 63.94988 * 14 13 3 31 31 H 1.09003 * 109.47388 * 44.00775 * 15 13 3 32 32 H 1.08998 * 109.47111 * 284.00812 * 15 13 3 33 33 H 1.07999 * 120.00432 * 359.97438 * 17 16 15 34 34 H 1.08002 * 119.99855 * 179.77087 * 19 18 17 35 35 H 1.08000 * 119.99937 * 180.27455 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4442 0.1232 6 1 4.1469 1.8890 -0.6531 7 6 4.1437 0.8783 1.2271 8 7 3.4071 0.3365 2.1723 9 14 6.0054 0.8811 1.3801 10 1 6.5988 1.5472 0.1929 11 1 6.4000 1.6164 2.6085 12 1 6.4977 -0.5177 1.4609 13 7 1.6508 2.0994 -1.2549 14 6 1.8491 3.5527 -1.1720 15 6 2.3834 1.5325 -2.3951 16 6 1.7010 1.9303 -3.6786 17 6 2.1358 3.0430 -4.3772 18 7 1.5411 3.3886 -5.5053 19 6 0.5247 2.6775 -5.9612 20 6 0.0901 1.5653 -5.2628 21 7 0.6881 1.2165 -4.1371 22 1 -0.3634 0.4377 0.9297 23 1 -0.3633 0.5864 -0.8439 24 1 -0.3634 -1.0240 -0.0859 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8305 -0.0620 2.9487 28 1 1.4880 4.0214 -2.0875 29 1 1.2959 3.9467 -0.3194 30 1 2.9103 3.7681 -1.0476 31 1 2.3982 0.4456 -2.3133 32 1 3.4056 1.9108 -2.3946 33 1 2.9637 3.6265 -4.0024 34 1 0.0362 2.9622 -6.8814 35 1 -0.7377 0.9816 -5.6377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704218416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:31 Heat of formation + Delta-G solvation = 31.372190 kcal Electronic energy + Delta-G solvation = -16868.349789 eV Core-core repulsion = 14286.830551 eV Total energy + Delta-G solvation = -2581.519239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96038 -39.01550 -35.36105 -34.77105 -33.33048 -32.37170 -28.71706 -28.48682 -26.08700 -25.29735 -24.23680 -22.97274 -20.86263 -18.57024 -18.40094 -17.73749 -17.19629 -16.57687 -16.08832 -15.82124 -15.18110 -15.03769 -14.53106 -14.13562 -13.90976 -13.45887 -13.22923 -13.03455 -12.81490 -12.72749 -12.52633 -12.46966 -12.34690 -12.10324 -11.87523 -11.52504 -11.32429 -11.00360 -10.46382 -10.11751 -9.91149 -8.96584 -8.02255 -6.24608 -0.10063 0.25833 1.38630 1.42308 1.50977 2.41793 2.77100 3.16038 3.21231 3.42211 3.52662 3.70851 4.02088 4.26883 4.45903 4.50404 4.59801 4.64674 4.71454 4.77364 4.88223 4.94574 4.96017 5.07174 5.26257 5.44409 5.49242 5.53839 5.63751 5.80089 6.04075 6.14627 6.37830 6.41642 6.59933 6.94598 6.95303 7.46623 8.93942 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.007323 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.230981 B = 3822.737822 C = 4310.455076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.553 4.553 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.530 5.530 14 C 0.037 3.963 15 C 0.120 3.880 16 C 0.090 3.910 17 C 0.044 3.956 18 N -0.457 5.457 19 C 0.042 3.958 20 C 0.051 3.949 21 N -0.453 5.453 22 H 0.031 0.969 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.023 0.977 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.172 0.828 34 H 0.207 0.793 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 3.269 -13.081 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.026 0.974 5 C -0.592 4.592 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.254 5.254 14 C -0.112 4.112 15 C -0.009 4.009 16 C -0.050 4.050 17 C -0.115 4.115 18 N -0.172 5.172 19 C -0.118 4.118 20 C -0.110 4.110 21 N -0.169 5.169 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.189 0.811 34 H 0.224 0.776 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.188 3.102 -12.956 14.297 hybrid contribution 1.904 0.014 0.791 2.061 sum -3.285 3.116 -12.165 12.981 Atomic orbital electron populations 1.21545 0.96646 0.99800 1.00213 1.21421 0.94262 0.98291 1.00173 1.19085 0.92193 0.91534 0.85676 0.97426 1.22031 0.93729 1.37843 1.05555 0.92467 1.25607 1.01747 0.94868 0.95533 1.70013 1.36262 1.38886 1.09862 0.85688 0.81448 0.77624 0.77947 1.19280 1.20926 1.20848 1.62319 1.55633 1.03684 1.03738 1.22210 0.99266 0.88874 1.00844 1.20629 0.93760 1.00443 0.86067 1.22249 0.93119 0.92847 0.96794 1.23647 1.00412 0.95469 0.91963 1.68479 1.07797 1.29302 1.11573 1.24374 0.93291 0.92481 1.01665 1.24439 0.99631 0.96405 0.90495 1.68293 1.06195 1.29980 1.12442 0.94939 0.92838 0.93760 0.95153 0.91794 0.92943 0.91941 0.92724 0.95808 0.90854 0.93127 0.81107 0.77620 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 9.86 71.98 0.71 -4.49 16 2 C -0.10 -4.96 5.22 30.59 0.16 -4.80 16 3 C 0.22 10.91 1.69 44.17 0.07 10.99 16 4 H 0.01 0.43 7.96 -2.38 -0.02 0.41 16 5 C -0.55 -28.87 7.28 25.60 0.19 -28.68 16 6 H 0.06 2.94 6.00 -2.91 -0.02 2.92 16 7 C 0.02 1.21 5.29 84.65 0.45 1.65 16 8 N -0.91 -51.28 11.29 21.45 0.24 -51.03 16 9 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.53 -22.12 4.01 -905.99 -3.63 -25.75 16 14 C 0.04 1.37 9.08 127.69 1.16 2.53 16 15 C 0.12 4.65 4.35 85.56 0.37 5.02 16 16 C 0.09 2.97 5.83 42.55 0.25 3.22 16 17 C 0.04 1.28 9.66 84.68 0.82 2.10 16 18 N -0.46 -12.13 10.50 -195.23 -2.05 -14.18 16 19 C 0.04 0.87 11.22 84.67 0.95 1.82 16 20 C 0.05 1.14 11.22 84.67 0.95 2.10 16 21 N -0.45 -14.43 10.42 -183.29 -1.91 -16.34 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 2.20 7.62 -2.39 -0.02 2.18 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.44 6.24 -2.39 -0.01 1.43 16 26 H 0.06 3.45 5.95 -2.39 -0.01 3.44 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 2.04 6.61 -2.39 -0.02 2.03 16 29 H 0.05 2.05 8.03 -2.38 -0.02 2.03 16 30 H 0.02 0.91 7.41 -2.39 -0.02 0.89 16 31 H 0.07 3.12 6.04 -2.39 -0.01 3.11 16 32 H 0.05 1.97 6.52 -2.39 -0.02 1.95 16 33 H 0.17 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.20 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -61.76 284.94 1.83 -59.94 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.07 Total: 11.32 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 6.08 Total: -8.55 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -7.35 Total: -107.30 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -61.76 1.83 -59.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704218416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.309 kcal (2) G-P(sol) polarization free energy of solvation -61.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds