Wall clock time and date at job start Sun Mar 29 2020 21:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38067 * 119.57172 * 2 1 4 4 C 1.38834 * 119.32743 * 179.74867 * 3 2 1 5 5 C 1.38343 * 118.50450 * 0.47995 * 4 3 2 6 6 C 1.50704 * 120.44751 * 179.75974 * 5 4 3 7 7 N 1.46893 * 109.47295 * 259.72864 * 6 5 4 8 8 C 1.46901 * 111.00360 * 293.95434 * 7 6 5 9 9 C 1.46906 * 110.99932 * 170.00151 * 7 6 5 10 10 C 1.50703 * 109.47109 * 190.00029 * 9 7 6 11 11 H 1.08005 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99989 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47285 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47233 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.46790 * 239.99650 * 14 12 10 18 18 C 1.39097 * 119.09932 * 359.49556 * 5 4 3 19 19 N 1.39000 * 119.70431 * 180.24720 * 18 5 4 20 20 N 1.31942 * 119.57119 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47936 * 270.02557 * 1 2 3 22 22 H 1.09001 * 109.47119 * 30.03493 * 1 2 3 23 23 H 1.09000 * 109.46838 * 150.02727 * 1 2 3 24 24 H 1.08002 * 120.33035 * 0.02562 * 3 2 1 25 25 H 1.08001 * 120.74910 * 180.25400 * 4 3 2 26 26 H 1.09004 * 109.46439 * 139.72851 * 6 5 4 27 27 H 1.08994 * 109.47235 * 19.73652 * 6 5 4 28 28 H 1.08995 * 109.47046 * 296.04847 * 8 7 6 29 29 H 1.09008 * 109.46903 * 56.04730 * 8 7 6 30 30 H 1.08999 * 109.47457 * 176.04446 * 8 7 6 31 31 H 1.08992 * 109.47459 * 309.99948 * 9 7 6 32 32 H 1.09004 * 109.47040 * 70.00098 * 9 7 6 33 33 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 34 34 H 0.97008 * 120.00238 * 0.02562 * 19 18 5 35 35 H 0.96992 * 120.00126 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5767 1.1949 0.0053 5 6 4.2317 -0.0236 0.0003 6 6 5.7377 -0.0811 0.0003 7 7 6.2178 -0.3408 -1.3635 8 6 5.8170 -1.6794 -1.8168 9 6 7.6743 -0.1697 -1.4503 10 6 8.0984 -0.2006 -2.8961 11 1 7.3597 -0.3335 -3.6728 12 6 9.4293 -0.0591 -3.2273 13 7 10.3286 0.1032 -2.2815 14 14 9.9548 -0.0967 -5.0195 15 1 8.7612 -0.2893 -5.8815 16 1 10.6161 1.1864 -5.3684 17 1 10.9053 -1.2175 -5.2331 18 6 3.4815 -1.1949 0.0008 19 7 4.1268 -2.4261 0.0010 20 7 2.1581 -1.1476 0.0005 21 1 -0.3635 0.0005 1.0276 22 1 -0.3633 0.8897 -0.5144 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6468 2.1352 0.0004 25 1 4.1328 2.1207 0.0095 26 1 6.0706 -0.8813 0.6613 27 1 6.1376 0.8701 0.3514 28 1 6.2953 -2.4331 -1.1914 29 1 4.7341 -1.7791 -1.7422 30 1 6.1241 -1.8191 -2.8533 31 1 7.9547 0.7870 -1.0098 32 1 8.1678 -0.9773 -0.9096 33 1 11.2648 0.2031 -2.5146 34 1 5.0960 -2.4658 0.0011 35 1 3.6079 -3.2456 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711229340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:09 Heat of formation + Delta-G solvation = 52.098776 kcal Electronic energy + Delta-G solvation = -16449.969311 eV Core-core repulsion = 13869.348844 eV Total energy + Delta-G solvation = -2580.620467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30397 -36.98157 -34.62523 -33.05248 -32.16411 -30.44669 -28.58795 -27.04057 -25.51021 -23.55701 -22.64941 -21.39293 -20.02645 -17.33496 -16.94092 -16.26501 -15.25141 -14.97790 -14.88430 -14.55306 -14.02696 -13.75846 -13.55435 -12.91481 -12.55047 -12.52617 -12.15186 -11.97580 -11.56536 -11.43536 -11.06758 -11.03642 -10.69061 -10.65169 -10.05648 -9.82170 -9.32007 -9.21846 -9.11723 -8.46013 -7.52458 -7.24150 -6.05054 -4.06276 1.49414 1.74903 3.29671 3.37202 3.42568 3.71248 4.08495 4.42258 4.71477 4.99673 5.12363 5.24260 5.30034 5.34098 5.54904 5.59310 5.63650 5.74544 5.87252 6.06857 6.12083 6.19670 6.22222 6.35511 6.68655 6.73311 6.87800 7.23481 7.27949 7.46931 7.66406 7.77945 8.04333 8.15847 8.46748 8.51286 9.01754 9.58211 11.05806 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.005303 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.711225 B = 5278.687013 C = 5346.662913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.160 3.840 3 C -0.234 4.234 4 C -0.020 4.020 5 C -0.182 4.182 6 C 0.101 3.899 7 N -0.534 5.534 8 C 0.019 3.981 9 C 0.191 3.809 10 C -0.506 4.506 11 H 0.064 0.936 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.412 3.588 19 N -0.854 5.854 20 N -0.549 5.549 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.132 0.868 26 H 0.026 0.974 27 H 0.079 0.921 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.031 0.969 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.413 0.587 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.899 -1.025 5.998 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.257 4.257 4 C -0.046 4.046 5 C -0.190 4.190 6 C -0.028 4.028 7 N -0.258 5.258 8 C -0.130 4.130 9 C 0.066 3.934 10 C -0.544 4.544 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.175 3.825 19 N -0.404 5.404 20 N -0.269 5.269 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.150 0.850 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.250 0.750 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.354 -1.397 5.712 16.441 hybrid contribution 1.594 -0.153 -0.415 1.654 sum -13.760 -1.550 5.296 14.826 Atomic orbital electron populations 1.20660 0.89429 1.03050 1.02566 1.20771 0.96032 0.87693 0.93297 1.21549 0.94683 0.98594 1.10833 1.21216 0.93803 0.97335 0.92289 1.20197 0.96779 0.92431 1.09580 1.20828 0.89288 1.01109 0.91578 1.62186 1.17342 1.27155 1.19119 1.22826 0.99901 0.88856 1.01402 1.19791 0.79779 0.96257 0.97609 1.21192 0.92236 1.48936 0.92084 0.91829 1.24986 0.96590 0.95433 0.97606 1.69967 1.01569 1.50245 1.32110 0.86443 0.78548 0.77552 0.84904 1.19667 1.20968 1.21120 1.18070 0.87951 0.86330 0.90191 1.43090 1.10027 1.04543 1.82695 1.66930 1.07478 1.30227 1.22218 0.90838 0.90893 0.90911 0.85586 0.84979 0.95609 0.90234 0.97307 0.91349 0.91000 0.95124 0.99127 0.92975 0.75030 0.77494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.62 16 2 C 0.16 2.22 6.78 -82.61 -0.56 1.66 16 3 C -0.23 -3.14 9.73 -39.42 -0.38 -3.52 16 4 C -0.02 -0.30 9.81 -39.32 -0.39 -0.69 16 5 C -0.18 -3.04 5.19 -104.26 -0.54 -3.58 16 6 C 0.10 1.83 4.97 -4.98 -0.02 1.80 16 7 N -0.53 -11.53 4.74 -245.82 -1.17 -12.70 16 8 C 0.02 0.37 7.71 60.07 0.46 0.83 16 9 C 0.19 4.92 4.72 -4.97 -0.02 4.90 16 10 C -0.51 -14.22 8.51 -34.44 -0.29 -14.51 16 11 H 0.06 1.79 7.10 -52.48 -0.37 1.42 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.41 6.64 6.55 -155.02 -1.02 5.62 16 19 N -0.85 -11.84 7.16 31.12 0.22 -11.61 16 20 N -0.55 -8.67 10.30 -8.67 -0.09 -8.76 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.03 0.45 7.09 -51.93 -0.37 0.08 16 27 H 0.08 1.42 7.82 -51.93 -0.41 1.01 16 28 H 0.01 0.16 6.82 -51.93 -0.35 -0.19 16 29 H 0.07 1.23 4.57 -51.92 -0.24 0.99 16 30 H 0.07 1.53 6.86 -51.93 -0.36 1.18 16 31 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.41 5.83 4.25 -40.82 -0.17 5.66 16 35 H 0.40 4.68 8.95 -40.82 -0.37 4.31 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -31.15 284.23 -8.24 -39.39 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.71 Total: 5.25 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.49 Total: -6.65 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.30 Total: -58.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.15 -8.24 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711229340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.487 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds