Wall clock time and date at job start Sun Mar 29 2020 21:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38067 * 119.57172 * 2 1 4 4 C 1.38834 * 119.32743 * 179.74867 * 3 2 1 5 5 C 1.38343 * 118.50450 * 0.47995 * 4 3 2 6 6 C 1.50704 * 120.44751 * 179.75974 * 5 4 3 7 7 N 1.46893 * 109.47295 * 259.72864 * 6 5 4 8 8 C 1.46901 * 111.00360 * 293.95434 * 7 6 5 9 9 C 1.46906 * 110.99932 * 170.00151 * 7 6 5 10 10 C 1.50703 * 109.47109 * 190.00029 * 9 7 6 11 11 H 1.08005 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99989 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47285 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47233 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.46790 * 239.99650 * 14 12 10 18 18 C 1.39097 * 119.09932 * 359.49556 * 5 4 3 19 19 N 1.39000 * 119.70431 * 180.24720 * 18 5 4 20 20 N 1.31942 * 119.57119 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47936 * 270.02557 * 1 2 3 22 22 H 1.09001 * 109.47119 * 30.03493 * 1 2 3 23 23 H 1.09000 * 109.46838 * 150.02727 * 1 2 3 24 24 H 1.08002 * 120.33035 * 0.02562 * 3 2 1 25 25 H 1.08001 * 120.74910 * 180.25400 * 4 3 2 26 26 H 1.09004 * 109.46439 * 139.72851 * 6 5 4 27 27 H 1.08994 * 109.47235 * 19.73652 * 6 5 4 28 28 H 1.08995 * 109.47046 * 296.04847 * 8 7 6 29 29 H 1.09008 * 109.46903 * 56.04730 * 8 7 6 30 30 H 1.08999 * 109.47457 * 176.04446 * 8 7 6 31 31 H 1.08992 * 109.47459 * 309.99948 * 9 7 6 32 32 H 1.09004 * 109.47040 * 70.00098 * 9 7 6 33 33 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 34 34 H 0.97008 * 120.00238 * 0.02562 * 19 18 5 35 35 H 0.96992 * 120.00126 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5767 1.1949 0.0053 5 6 4.2317 -0.0236 0.0003 6 6 5.7377 -0.0811 0.0003 7 7 6.2178 -0.3408 -1.3635 8 6 5.8170 -1.6794 -1.8168 9 6 7.6743 -0.1697 -1.4503 10 6 8.0984 -0.2006 -2.8961 11 1 7.3597 -0.3335 -3.6728 12 6 9.4293 -0.0591 -3.2273 13 7 10.3286 0.1032 -2.2815 14 14 9.9548 -0.0967 -5.0195 15 1 8.7612 -0.2893 -5.8815 16 1 10.6161 1.1864 -5.3684 17 1 10.9053 -1.2175 -5.2331 18 6 3.4815 -1.1949 0.0008 19 7 4.1268 -2.4261 0.0010 20 7 2.1581 -1.1476 0.0005 21 1 -0.3635 0.0005 1.0276 22 1 -0.3633 0.8897 -0.5144 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6468 2.1352 0.0004 25 1 4.1328 2.1207 0.0095 26 1 6.0706 -0.8813 0.6613 27 1 6.1376 0.8701 0.3514 28 1 6.2953 -2.4331 -1.1914 29 1 4.7341 -1.7791 -1.7422 30 1 6.1241 -1.8191 -2.8533 31 1 7.9547 0.7870 -1.0098 32 1 8.1678 -0.9773 -0.9096 33 1 11.2648 0.2031 -2.5146 34 1 5.0960 -2.4658 0.0011 35 1 3.6079 -3.2456 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711229340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:09 Heat of formation + Delta-G solvation = 30.478922 kcal Electronic energy + Delta-G solvation = -16450.906818 eV Core-core repulsion = 13869.348844 eV Total energy + Delta-G solvation = -2581.557974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47914 -38.50903 -35.93489 -34.76323 -33.72667 -31.50423 -30.01154 -28.83860 -27.00288 -25.15738 -23.78444 -22.93765 -21.52187 -18.73966 -18.36384 -17.85914 -16.91809 -16.47524 -16.13225 -15.96525 -15.59274 -15.12627 -14.89680 -14.33017 -13.91663 -13.61431 -13.58827 -13.32008 -12.99690 -12.94783 -12.71794 -12.59606 -12.51865 -12.31190 -11.96885 -11.36224 -11.12877 -10.64163 -10.39795 -10.34766 -9.05108 -8.61665 -8.21319 -6.31577 0.34458 0.61402 1.39863 1.40849 1.54271 2.39457 2.60817 2.91667 3.10986 3.49313 3.67009 3.89718 4.07273 4.12567 4.32877 4.51300 4.57542 4.65168 4.72336 4.78825 4.89045 4.91919 5.05873 5.14253 5.23094 5.26724 5.29504 5.52295 5.63506 5.81439 6.02649 6.26195 6.33801 6.59062 6.61974 6.84265 7.34313 7.38236 8.89274 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.005303 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.711225 B = 5278.687013 C = 5346.662913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.153 3.847 3 C -0.232 4.232 4 C -0.027 4.027 5 C -0.209 4.209 6 C 0.107 3.893 7 N -0.543 5.543 8 C 0.027 3.973 9 C 0.205 3.795 10 C -0.523 4.523 11 H 0.059 0.941 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.401 3.599 19 N -0.848 5.848 20 N -0.565 5.565 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.158 0.842 25 H 0.142 0.858 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.007 0.993 32 H -0.033 1.033 33 H 0.265 0.735 34 H 0.411 0.589 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.642 -0.772 5.440 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.015 3.985 3 C -0.255 4.255 4 C -0.053 4.053 5 C -0.216 4.216 6 C -0.022 4.022 7 N -0.267 5.267 8 C -0.121 4.121 9 C 0.079 3.921 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.203 1.203 18 C 0.163 3.837 19 N -0.398 5.398 20 N -0.284 5.284 21 H 0.108 0.892 22 H 0.114 0.886 23 H 0.090 0.910 24 H 0.176 0.824 25 H 0.160 0.840 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.038 0.962 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.025 0.975 32 H -0.015 1.015 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.123 -1.160 5.164 17.922 hybrid contribution 2.028 -0.209 -0.171 2.046 sum -15.095 -1.369 4.993 15.958 Atomic orbital electron populations 1.20769 0.86516 1.04165 1.03934 1.21533 0.98011 0.87365 0.91552 1.21894 0.94020 0.99922 1.09631 1.21488 0.94935 0.97179 0.91711 1.20087 0.95474 0.93638 1.12448 1.20762 0.90788 1.00981 0.89634 1.62094 1.14404 1.28509 1.21711 1.22785 1.00973 0.88215 1.00166 1.19444 0.82419 0.94031 0.96167 1.21467 0.92588 1.49124 0.92975 0.92311 1.25866 0.96562 0.94783 1.02198 1.70080 1.02019 1.50869 1.34374 0.85354 0.78219 0.77836 0.79324 1.19061 1.20298 1.20295 1.18226 0.88378 0.86639 0.90446 1.43007 1.09915 1.04571 1.82270 1.67048 1.07120 1.31322 1.22941 0.89185 0.88550 0.91043 0.82411 0.84042 0.95158 0.90621 0.96187 0.89516 0.93133 0.97503 1.01488 0.92638 0.75325 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 10.17 71.24 0.72 -0.87 16 2 C 0.15 3.88 6.78 42.50 0.29 4.16 16 3 C -0.23 -5.63 9.73 22.37 0.22 -5.41 16 4 C -0.03 -0.78 9.81 22.44 0.22 -0.56 16 5 C -0.21 -6.85 5.19 -19.63 -0.10 -6.95 16 6 C 0.11 3.92 4.97 85.56 0.42 4.34 16 7 N -0.54 -23.86 4.74 -931.64 -4.42 -28.28 16 8 C 0.03 1.06 7.71 127.69 0.98 2.05 16 9 C 0.21 10.97 4.72 85.56 0.40 11.37 16 10 C -0.52 -29.92 8.51 25.60 0.22 -29.70 16 11 H 0.06 3.35 7.10 -2.91 -0.02 3.33 16 12 C 0.00 0.23 5.46 84.65 0.46 0.69 16 13 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 14 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 C 0.40 12.52 6.55 133.05 0.87 13.39 16 19 N -0.85 -22.89 7.16 -55.44 -0.40 -23.28 16 20 N -0.56 -16.88 10.30 -181.34 -1.87 -18.75 16 21 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 25 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.03 1.08 7.09 -2.39 -0.02 1.06 16 27 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 28 H 0.02 0.73 6.82 -2.39 -0.02 0.72 16 29 H 0.09 3.09 4.57 -2.38 -0.01 3.08 16 30 H 0.05 2.17 6.86 -2.39 -0.02 2.16 16 31 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 32 H -0.03 -1.85 8.12 -2.38 -0.02 -1.87 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.09 16 34 H 0.41 11.45 4.25 -92.70 -0.39 11.06 16 35 H 0.41 9.19 8.95 -92.71 -0.83 8.36 16 Total: -1.00 -66.67 284.23 0.22 -66.44 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.12 Total: 20.47 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.71 Total: -7.48 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -6.40 Total: -125.96 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.67 0.22 -66.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711229340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.924 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds