Wall clock time and date at job start Sun Mar 29 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99788 * 2 1 4 4 C 1.38996 * 120.00381 * 180.02562 * 2 1 3 5 5 C 1.39146 * 119.70357 * 4.72189 * 4 2 1 6 6 C 1.38304 * 119.09263 * 179.71540 * 5 4 2 7 7 C 1.50695 * 120.74594 * 180.30698 * 6 5 4 8 8 N 1.46502 * 109.47137 * 270.25380 * 7 6 5 9 9 C 1.46499 * 119.99506 * 269.99805 * 8 7 6 10 10 C 1.36934 * 120.00177 * 90.00158 * 8 7 6 11 11 H 1.07997 * 120.00214 * 22.37434 * 10 8 7 12 12 C 1.38808 * 119.99794 * 202.37720 * 10 8 7 13 13 N 1.31619 * 119.99940 * 11.32756 * 12 10 8 14 14 Si 1.86806 * 119.99841 * 191.32697 * 12 10 8 15 15 H 1.48497 * 109.47285 * 60.00019 * 14 12 10 16 16 H 1.48497 * 109.47009 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47001 * 300.00019 * 14 12 10 18 18 C 1.38885 * 118.50368 * 0.55081 * 6 5 4 19 19 C 1.38016 * 119.33222 * 359.73270 * 18 6 5 20 20 N 1.31966 * 120.85774 * 359.97438 * 19 18 6 21 21 H 1.09004 * 109.47255 * 90.00597 * 1 2 3 22 22 H 1.08995 * 109.47412 * 330.00104 * 1 2 3 23 23 H 1.09007 * 109.47026 * 209.99816 * 1 2 3 24 24 H 1.09000 * 109.46612 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.46972 * 119.99956 * 3 2 1 26 26 H 1.08997 * 109.46954 * 240.00150 * 3 2 1 27 27 H 1.07997 * 120.45121 * 359.97438 * 5 4 2 28 28 H 1.09003 * 109.47253 * 30.25405 * 7 6 5 29 29 H 1.09004 * 109.47111 * 150.25246 * 7 6 5 30 30 H 1.09003 * 109.46884 * 94.20866 * 9 8 7 31 31 H 1.09001 * 109.46819 * 214.20255 * 9 8 7 32 32 H 1.08999 * 109.47760 * 334.20415 * 9 8 7 33 33 H 0.97008 * 119.99475 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.33017 * 179.75472 * 18 6 5 35 35 H 1.08000 * 119.57010 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4617 -2.4031 -0.1006 6 6 2.1664 -3.5931 -0.1059 7 6 1.4484 -4.9131 -0.2195 8 7 1.1115 -5.4026 1.1196 9 6 2.0544 -6.2568 1.8458 10 6 -0.0847 -5.0619 1.6922 11 1 -0.9140 -4.7582 1.0706 12 6 -0.2315 -5.1067 3.0718 13 7 0.8256 -5.2568 3.8415 14 14 -1.9292 -4.9538 3.8360 15 1 -2.7933 -6.0581 3.3473 16 1 -1.8154 -5.0322 5.3145 17 1 -2.5285 -3.6500 3.4535 18 6 3.5503 -3.5444 0.0011 19 6 4.1778 -2.3193 0.1031 20 7 3.4802 -1.1991 0.0997 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 0.8899 0.5138 23 1 -0.3633 -0.8901 0.5138 24 1 1.4891 2.0972 -0.0005 25 1 2.8241 1.3265 0.8900 26 1 2.8241 1.3265 -0.8900 27 1 0.3845 -2.4044 -0.1773 28 1 0.5345 -4.7810 -0.7987 29 1 2.0937 -5.6359 -0.7189 30 1 2.6749 -5.6412 2.4972 31 1 1.5018 -6.9790 2.4468 32 1 2.6882 -6.7858 1.1340 33 1 0.7230 -5.2885 4.8056 34 1 4.1296 -4.4560 0.0040 35 1 5.2537 -2.2770 0.1869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782173456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:56 Heat of formation + Delta-G solvation = 73.666122 kcal Electronic energy + Delta-G solvation = -16742.017792 eV Core-core repulsion = 14162.332555 eV Total energy + Delta-G solvation = -2579.685236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63416 -36.38274 -35.41722 -32.50423 -30.57322 -29.81033 -28.04060 -26.28839 -25.68993 -24.63089 -22.31793 -21.28719 -19.87013 -16.86613 -16.48685 -15.94157 -15.04714 -14.93986 -14.79293 -14.01429 -13.86829 -13.63877 -13.13977 -12.73531 -12.63933 -12.38192 -12.04039 -11.83551 -11.44806 -11.25787 -10.90566 -10.89332 -10.66631 -10.32172 -10.04839 -9.94738 -9.40648 -8.84482 -8.72359 -8.56381 -7.04626 -6.81175 -5.75999 -3.20484 2.01210 2.18461 3.33919 3.35991 3.41309 3.42121 4.44983 4.61914 5.05609 5.22831 5.39398 5.45279 5.55601 5.65354 5.72074 5.78718 5.85200 5.89407 5.95076 6.01789 6.05592 6.27306 6.51879 6.56769 6.68290 6.76550 7.16999 7.34458 7.36351 7.38508 7.71679 7.78742 7.89563 8.35505 8.76240 9.19313 9.81404 10.30603 11.28448 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.008674 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.130691 B = 3227.341767 C = 4000.322419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.626 5.626 3 C 0.113 3.887 4 C 0.389 3.611 5 C -0.214 4.214 6 C -0.003 4.003 7 C 0.179 3.821 8 N -0.587 5.587 9 C 0.163 3.837 10 C -0.254 4.254 11 H 0.069 0.931 12 C 0.004 3.996 13 N -0.903 5.903 14 Si 0.906 3.094 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.283 1.283 18 C -0.221 4.221 19 C 0.130 3.870 20 N -0.556 5.556 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.125 0.875 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.047 0.953 32 H -0.001 1.001 33 H 0.254 0.746 34 H 0.120 0.880 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 7.216 -8.113 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.343 5.343 3 C -0.030 4.030 4 C 0.157 3.843 5 C -0.239 4.239 6 C -0.014 4.014 7 C 0.051 3.949 8 N -0.308 5.308 9 C 0.019 3.981 10 C -0.384 4.384 11 H 0.087 0.913 12 C -0.195 4.195 13 N -0.547 5.547 14 Si 0.735 3.265 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.209 1.209 18 C -0.244 4.244 19 C -0.026 4.026 20 N -0.275 5.275 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.272 8.085 -7.822 11.476 hybrid contribution -1.216 -0.486 0.750 1.510 sum 1.055 7.599 -7.072 10.434 Atomic orbital electron populations 1.21650 0.78854 1.03033 1.00894 1.46016 1.04721 1.02933 1.80637 1.21348 0.96053 0.84134 1.01475 1.18269 0.88517 0.85509 0.92018 1.21205 1.00437 0.91102 1.11199 1.21351 0.93445 0.97216 0.89431 1.20015 0.96553 0.89103 0.89190 1.44111 1.18034 1.53699 1.14992 1.20841 0.91639 0.92862 0.92773 1.19179 0.87958 1.41625 0.89632 0.91284 1.25084 0.97159 1.00810 0.96458 1.70067 1.27181 1.53768 1.03664 0.86324 0.83853 0.78110 0.78187 1.20931 1.21597 1.20911 1.21614 0.95074 0.98505 1.09210 1.22119 0.98742 0.87347 0.94414 1.67015 1.06346 1.31979 1.22139 0.93605 0.91727 0.90673 0.92005 0.92972 0.93244 0.85759 0.92678 0.93015 0.95286 0.93420 0.98289 0.93608 0.86223 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 10.03 59.85 0.60 1.94 16 2 N -0.63 -10.24 3.39 -189.66 -0.64 -10.88 16 3 C 0.11 1.52 10.19 59.85 0.61 2.13 16 4 C 0.39 7.59 7.37 -155.02 -1.14 6.45 16 5 C -0.21 -4.34 8.89 -39.22 -0.35 -4.69 16 6 C 0.00 -0.06 5.50 -104.36 -0.57 -0.63 16 7 C 0.18 3.72 5.88 -5.20 -0.03 3.69 16 8 N -0.59 -14.77 2.91 -182.50 -0.53 -15.30 16 9 C 0.16 4.05 9.01 59.85 0.54 4.59 16 10 C -0.25 -6.92 9.67 -15.06 -0.15 -7.06 16 11 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 12 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 13 N -0.90 -26.48 10.59 55.49 0.59 -25.90 16 14 Si 0.91 21.77 29.57 -169.99 -5.03 16.75 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.22 -4.19 9.81 -39.42 -0.39 -4.58 16 19 C 0.13 2.35 11.17 -17.58 -0.20 2.16 16 20 N -0.56 -10.85 9.57 -12.44 -0.12 -10.97 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.72 7.92 -51.93 -0.41 0.30 16 23 H 0.07 1.14 6.37 -51.93 -0.33 0.81 16 24 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.12 2.44 6.26 -52.49 -0.33 2.11 16 28 H 0.05 1.10 7.99 -51.93 -0.42 0.68 16 29 H 0.05 0.97 7.82 -51.93 -0.41 0.56 16 30 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 31 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 32 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.12 2.07 8.06 -52.48 -0.42 1.64 16 35 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -31.65 293.30 -7.60 -39.25 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.12 Total: -1.37 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.17 Total: 4.00 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.71 Total: -63.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.65 -7.60 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782173456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.915 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds