Wall clock time and date at job start Sun Mar 29 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99788 * 2 1 4 4 C 1.38996 * 120.00381 * 180.02562 * 2 1 3 5 5 C 1.39146 * 119.70357 * 4.72189 * 4 2 1 6 6 C 1.38304 * 119.09263 * 179.71540 * 5 4 2 7 7 C 1.50695 * 120.74594 * 180.30698 * 6 5 4 8 8 N 1.46502 * 109.47137 * 270.25380 * 7 6 5 9 9 C 1.46499 * 119.99506 * 269.99805 * 8 7 6 10 10 C 1.36934 * 120.00177 * 90.00158 * 8 7 6 11 11 H 1.07997 * 120.00214 * 22.37434 * 10 8 7 12 12 C 1.38808 * 119.99794 * 202.37720 * 10 8 7 13 13 N 1.31619 * 119.99940 * 11.32756 * 12 10 8 14 14 Si 1.86806 * 119.99841 * 191.32697 * 12 10 8 15 15 H 1.48497 * 109.47285 * 60.00019 * 14 12 10 16 16 H 1.48497 * 109.47009 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47001 * 300.00019 * 14 12 10 18 18 C 1.38885 * 118.50368 * 0.55081 * 6 5 4 19 19 C 1.38016 * 119.33222 * 359.73270 * 18 6 5 20 20 N 1.31966 * 120.85774 * 359.97438 * 19 18 6 21 21 H 1.09004 * 109.47255 * 90.00597 * 1 2 3 22 22 H 1.08995 * 109.47412 * 330.00104 * 1 2 3 23 23 H 1.09007 * 109.47026 * 209.99816 * 1 2 3 24 24 H 1.09000 * 109.46612 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.46972 * 119.99956 * 3 2 1 26 26 H 1.08997 * 109.46954 * 240.00150 * 3 2 1 27 27 H 1.07997 * 120.45121 * 359.97438 * 5 4 2 28 28 H 1.09003 * 109.47253 * 30.25405 * 7 6 5 29 29 H 1.09004 * 109.47111 * 150.25246 * 7 6 5 30 30 H 1.09003 * 109.46884 * 94.20866 * 9 8 7 31 31 H 1.09001 * 109.46819 * 214.20255 * 9 8 7 32 32 H 1.08999 * 109.47760 * 334.20415 * 9 8 7 33 33 H 0.97008 * 119.99475 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.33017 * 179.75472 * 18 6 5 35 35 H 1.08000 * 119.57010 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4617 -2.4031 -0.1006 6 6 2.1664 -3.5931 -0.1059 7 6 1.4484 -4.9131 -0.2195 8 7 1.1115 -5.4026 1.1196 9 6 2.0544 -6.2568 1.8458 10 6 -0.0847 -5.0619 1.6922 11 1 -0.9140 -4.7582 1.0706 12 6 -0.2315 -5.1067 3.0718 13 7 0.8256 -5.2568 3.8415 14 14 -1.9292 -4.9538 3.8360 15 1 -2.7933 -6.0581 3.3473 16 1 -1.8154 -5.0322 5.3145 17 1 -2.5285 -3.6500 3.4535 18 6 3.5503 -3.5444 0.0011 19 6 4.1778 -2.3193 0.1031 20 7 3.4802 -1.1991 0.0997 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 0.8899 0.5138 23 1 -0.3633 -0.8901 0.5138 24 1 1.4891 2.0972 -0.0005 25 1 2.8241 1.3265 0.8900 26 1 2.8241 1.3265 -0.8900 27 1 0.3845 -2.4044 -0.1773 28 1 0.5345 -4.7810 -0.7987 29 1 2.0937 -5.6359 -0.7189 30 1 2.6749 -5.6412 2.4972 31 1 1.5018 -6.9790 2.4468 32 1 2.6882 -6.7858 1.1340 33 1 0.7230 -5.2885 4.8056 34 1 4.1296 -4.4560 0.0040 35 1 5.2537 -2.2770 0.1869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782173456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:55 Heat of formation + Delta-G solvation = 55.133902 kcal Electronic energy + Delta-G solvation = -16742.821409 eV Core-core repulsion = 14162.332555 eV Total energy + Delta-G solvation = -2580.488854 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07928 -37.91088 -37.02671 -34.25195 -32.43111 -31.20262 -29.22970 -28.08383 -27.57297 -25.92691 -23.97862 -22.92255 -21.38191 -18.79645 -17.94833 -17.39557 -16.78494 -16.46642 -16.15536 -15.52266 -15.41191 -15.29377 -14.82764 -14.47606 -14.06179 -13.45716 -13.37675 -13.17880 -13.05196 -12.81747 -12.75669 -12.58821 -12.44599 -12.12313 -12.03685 -11.83356 -10.75888 -10.66379 -10.32061 -10.27219 -8.82771 -8.38132 -7.83847 -5.31249 0.53222 0.67125 1.44697 1.47426 1.53555 2.12316 2.50007 3.09545 3.32808 3.74212 3.86100 4.06876 4.16219 4.35986 4.44864 4.49094 4.50466 4.57926 4.76651 4.79962 4.84973 4.87082 4.95061 4.98003 5.06549 5.19813 5.34392 5.61509 5.72461 5.74006 5.86177 6.13602 6.30858 6.51392 7.13422 7.31924 7.83850 8.27788 9.19299 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.008674 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.130691 B = 3227.341767 C = 4000.322419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.630 5.630 3 C 0.112 3.888 4 C 0.378 3.622 5 C -0.233 4.233 6 C -0.019 4.019 7 C 0.179 3.821 8 N -0.604 5.604 9 C 0.178 3.822 10 C -0.258 4.258 11 H 0.074 0.926 12 C -0.053 4.053 13 N -0.937 5.937 14 Si 0.966 3.034 15 H -0.275 1.275 16 H -0.298 1.298 17 H -0.275 1.275 18 C -0.232 4.232 19 C 0.130 3.870 20 N -0.568 5.568 21 H 0.064 0.936 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.076 0.924 30 H -0.002 1.002 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.246 0.754 34 H 0.136 0.864 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 8.334 -9.195 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.346 5.346 3 C -0.031 4.031 4 C 0.144 3.856 5 C -0.258 4.258 6 C -0.030 4.030 7 C 0.053 3.947 8 N -0.325 5.325 9 C 0.034 3.966 10 C -0.388 4.388 11 H 0.092 0.908 12 C -0.248 4.248 13 N -0.584 5.584 14 Si 0.794 3.206 15 H -0.201 1.201 16 H -0.224 1.224 17 H -0.200 1.200 18 C -0.255 4.255 19 C -0.026 4.026 20 N -0.287 5.287 21 H 0.082 0.918 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.141 0.859 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.017 0.983 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.154 0.846 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.029 9.241 -8.953 13.026 hybrid contribution -1.094 -0.755 0.955 1.637 sum 0.935 8.486 -7.998 11.698 Atomic orbital electron populations 1.21811 0.77404 1.03311 1.02174 1.46374 1.05860 1.02848 1.79486 1.21494 0.96785 0.83901 1.00890 1.18562 0.88797 0.86573 0.91688 1.21313 1.00533 0.91743 1.12247 1.21366 0.94389 0.97016 0.90198 1.20113 0.97479 0.89932 0.87141 1.44245 1.17782 1.54552 1.15958 1.20567 0.91176 0.91955 0.92938 1.19511 0.89163 1.40241 0.89913 0.90819 1.25817 1.00387 1.01508 0.97057 1.70252 1.28975 1.55913 1.03235 0.85354 0.80066 0.78461 0.76686 1.20073 1.22400 1.20028 1.21840 0.94656 0.99672 1.09337 1.22703 1.00362 0.86759 0.92787 1.67140 1.06431 1.32550 1.22580 0.91755 0.88897 0.92902 0.88442 0.94142 0.93181 0.85945 0.92084 0.90625 0.98316 0.96069 0.94709 0.94460 0.84625 0.80572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.39 10.03 127.77 1.28 3.67 16 2 N -0.63 -19.52 3.39 -753.96 -2.56 -22.07 16 3 C 0.11 2.74 10.19 127.77 1.30 4.04 16 4 C 0.38 14.36 7.37 133.07 0.98 15.34 16 5 C -0.23 -9.35 8.89 22.50 0.20 -9.15 16 6 C -0.02 -0.75 5.50 -19.70 -0.11 -0.86 16 7 C 0.18 7.27 5.88 85.63 0.50 7.78 16 8 N -0.60 -30.18 2.91 -731.31 -2.13 -32.31 16 9 C 0.18 8.87 9.01 127.77 1.15 10.02 16 10 C -0.26 -14.05 9.67 84.03 0.81 -13.24 16 11 H 0.07 3.85 7.84 -2.91 -0.02 3.82 16 12 C -0.05 -2.96 5.13 84.86 0.44 -2.52 16 13 N -0.94 -56.25 10.59 21.65 0.23 -56.02 16 14 Si 0.97 45.09 29.57 68.60 2.03 47.12 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 C -0.23 -8.49 9.81 22.37 0.22 -8.27 16 19 C 0.13 4.49 11.17 84.62 0.95 5.43 16 20 N -0.57 -21.40 9.57 -193.27 -1.85 -23.25 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 23 H 0.05 1.56 6.37 -2.38 -0.02 1.55 16 24 H 0.10 1.67 7.79 -2.39 -0.02 1.65 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.12 4.82 6.26 -2.91 -0.02 4.80 16 28 H 0.06 2.37 7.99 -2.39 -0.02 2.35 16 29 H 0.08 2.67 7.82 -2.39 -0.02 2.65 16 30 H 0.00 -0.08 7.42 -2.39 -0.02 -0.10 16 31 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 32 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 33 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 34 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.18 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -68.02 293.30 4.51 -63.51 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.06 Total: 10.79 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 7.72 Total: 12.24 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -6.30 Total: -133.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -68.02 4.51 -63.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782173456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.642 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds