Wall clock time and date at job start Sun Mar 29 2020 21:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48503 * 109.47573 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47090 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47483 * 60.00039 * 3 2 1 7 7 C 1.37879 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99920 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.35311 * 126.12521 * 94.97167 * 12 11 10 14 14 C 1.39876 * 107.91749 * 180.02562 * 13 12 11 15 15 N 1.30834 * 108.20073 * 0.27043 * 14 13 12 16 16 N 1.34947 * 126.12449 * 275.01920 * 12 11 10 17 17 C 1.46500 * 126.04040 * 359.96194 * 16 12 11 18 18 C 1.52992 * 109.47291 * 90.00121 * 17 16 12 19 19 C 1.53002 * 117.50045 * 243.62435 * 18 17 16 20 20 C 1.52996 * 117.50056 * 175.00092 * 18 17 16 21 21 H 0.96996 * 120.00533 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46925 * 59.99618 * 9 7 2 23 23 H 1.09004 * 109.47094 * 300.00384 * 9 7 2 24 24 H 1.00902 * 110.99665 * 56.04156 * 10 9 7 25 25 H 1.08997 * 109.47145 * 60.00077 * 11 10 9 26 26 H 1.08995 * 109.47360 * 299.99515 * 11 10 9 27 27 H 1.07992 * 126.04231 * 0.02562 * 13 12 11 28 28 H 1.08002 * 125.89548 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47009 * 210.00717 * 17 16 12 30 30 H 1.09011 * 109.46832 * 330.00309 * 17 16 12 31 31 H 1.09003 * 115.54771 * 29.33415 * 18 17 16 32 32 H 1.08997 * 117.49872 * 359.97438 * 19 18 17 33 33 H 1.09004 * 117.49641 * 145.02198 * 19 18 17 34 34 H 1.09002 * 117.50298 * 214.97878 * 20 18 17 35 35 H 1.08998 * 117.50434 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5151 -6.0260 -0.0018 13 6 2.9792 -6.6822 1.0867 14 6 3.8979 -7.6428 0.6508 15 7 3.9865 -7.5619 -0.6520 16 7 3.1188 -6.5522 -1.0879 17 6 2.9081 -6.1372 -2.4770 18 6 3.9011 -5.0296 -2.8345 19 6 3.3295 -3.6543 -3.1848 20 6 3.9210 -4.5394 -4.2837 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8407 -3.5486 0.7808 25 1 0.8809 -4.9812 -0.8913 26 1 0.8803 -4.9818 0.8886 27 1 2.6913 -6.4972 2.1110 28 1 4.4436 -8.3290 1.2814 29 1 3.0614 -6.9900 -3.1382 30 1 1.8904 -5.7646 -2.5945 31 1 4.8507 -5.0591 -2.3002 32 1 2.2459 -3.5387 -3.1609 33 1 3.9030 -2.7786 -2.8807 34 1 4.8836 -4.2459 -4.7026 35 1 3.2264 -5.0056 -4.9824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825721499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:55 Heat of formation + Delta-G solvation = 98.282503 kcal Electronic energy + Delta-G solvation = -16458.909572 eV Core-core repulsion = 13880.291782 eV Total energy + Delta-G solvation = -2578.617790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95654 -37.21121 -35.43274 -32.75512 -32.30112 -30.22725 -26.99282 -26.66129 -24.18148 -22.03078 -21.49707 -21.25079 -20.45187 -19.30301 -17.03711 -16.10729 -15.28084 -14.86691 -14.75540 -14.47323 -13.98392 -13.65530 -13.36975 -13.05853 -12.91281 -12.42238 -12.05293 -11.50509 -11.41513 -11.19920 -11.12428 -10.81184 -10.70832 -10.38334 -10.15730 -10.02548 -9.72480 -9.26710 -8.98350 -8.53729 -8.25210 -7.38954 -6.08433 -4.10098 2.14705 2.75969 3.09922 3.27670 3.35614 3.40302 4.08672 4.39346 4.73463 4.91627 4.97838 5.20238 5.25952 5.27987 5.31307 5.36576 5.54858 5.66964 5.72306 5.84781 5.97296 6.01100 6.04504 6.30890 6.46412 6.50466 6.56101 6.92430 7.13234 7.30615 7.34559 7.71926 8.00383 8.05193 8.28878 8.50993 8.99228 9.55198 11.02652 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.006726 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220342 B = 4162.000369 C = 4838.090941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.196 3.804 10 N -0.676 5.676 11 C 0.116 3.884 12 C 0.112 3.888 13 C -0.284 4.284 14 C 0.041 3.959 15 N -0.308 5.308 16 N -0.354 5.354 17 C 0.170 3.830 18 C -0.166 4.166 19 C -0.135 4.135 20 C -0.188 4.188 21 H 0.261 0.739 22 H 0.028 0.972 23 H -0.013 1.013 24 H 0.333 0.667 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.142 0.858 28 H 0.177 0.823 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -11.405 -3.180 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.308 5.308 11 C -0.015 4.015 12 C -0.017 4.017 13 C -0.314 4.314 14 C -0.144 4.144 15 N -0.129 5.129 16 N -0.136 5.136 17 C 0.049 3.951 18 C -0.186 4.186 19 C -0.172 4.172 20 C -0.225 4.225 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.005 0.995 24 H 0.150 0.850 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.159 0.841 28 H 0.194 0.806 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.005 -11.705 -5.072 13.703 hybrid contribution -0.282 1.250 1.740 2.161 sum 4.722 -10.454 -3.332 11.946 Atomic orbital electron populations 1.69959 1.06065 1.26731 1.50966 1.24964 0.94834 0.99316 0.95349 0.86459 0.80084 0.83447 0.77531 1.19688 1.21013 1.21099 1.21159 0.93506 0.90006 1.50210 0.91924 1.19562 0.90471 0.87153 0.95810 1.60714 1.20803 0.99877 1.49372 1.20479 0.92131 0.87618 1.01267 1.21246 0.97000 0.96317 0.87142 1.21216 1.07299 1.03849 0.99036 1.23697 0.98863 0.99486 0.92348 1.77269 1.13555 1.08950 1.13171 1.48492 1.31840 1.27011 1.06249 1.21174 0.99238 0.96867 0.77833 1.22428 1.00966 0.96667 0.98491 1.22908 1.01513 0.93473 0.99330 1.23008 1.02954 1.05486 0.91081 0.92942 0.95405 0.99524 0.85006 0.90877 0.93592 0.84054 0.80582 0.89361 0.88992 0.87838 0.88290 0.88306 0.89060 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.77 9.32 -34.44 -0.32 -14.09 16 8 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 9 C 0.20 4.81 5.44 -4.98 -0.03 4.78 16 10 N -0.68 -13.48 6.48 -116.34 -0.75 -14.23 16 11 C 0.12 1.98 5.86 -4.97 -0.03 1.95 16 12 C 0.11 1.81 6.44 -82.26 -0.53 1.28 16 13 C -0.28 -4.27 10.72 -40.01 -0.43 -4.70 16 14 C 0.04 0.59 12.03 -17.36 -0.21 0.39 16 15 N -0.31 -5.02 12.58 30.63 0.39 -4.64 16 16 N -0.35 -5.64 3.61 -57.14 -0.21 -5.85 16 17 C 0.17 2.35 6.53 -4.05 -0.03 2.33 16 18 C -0.17 -2.39 6.01 -90.63 -0.54 -2.93 16 19 C -0.14 -2.07 10.18 -26.73 -0.27 -2.34 16 20 C -0.19 -2.32 10.25 -26.73 -0.27 -2.59 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H -0.01 -0.34 8.14 -51.93 -0.42 -0.77 16 24 H 0.33 6.70 8.72 -39.29 -0.34 6.36 16 25 H 0.07 1.22 7.24 -51.93 -0.38 0.84 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.21 6.88 -51.92 -0.36 0.86 16 31 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 32 H 0.10 1.62 8.03 -51.93 -0.42 1.20 16 33 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -29.43 303.28 -8.31 -37.74 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.27 Total: 5.95 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.76 Total: -14.46 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.16 Total: -50.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.43 -8.31 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825721499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.026 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds