Wall clock time and date at job start Sun Mar 29 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48503 * 109.47573 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47090 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47483 * 60.00039 * 3 2 1 7 7 C 1.37879 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00263 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99920 * 180.02562 * 10 9 7 12 12 C 1.50709 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.35311 * 126.12521 * 94.97167 * 12 11 10 14 14 C 1.39876 * 107.91749 * 180.02562 * 13 12 11 15 15 N 1.30834 * 108.20073 * 0.27043 * 14 13 12 16 16 N 1.34947 * 126.12449 * 275.01920 * 12 11 10 17 17 C 1.46500 * 126.04040 * 359.96194 * 16 12 11 18 18 C 1.52992 * 109.47291 * 90.00121 * 17 16 12 19 19 C 1.53002 * 117.50045 * 243.62435 * 18 17 16 20 20 C 1.52996 * 117.50056 * 175.00092 * 18 17 16 21 21 H 0.96996 * 120.00533 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46925 * 59.99618 * 9 7 2 23 23 H 1.09004 * 109.47094 * 300.00384 * 9 7 2 24 24 H 1.00902 * 110.99665 * 56.04156 * 10 9 7 25 25 H 1.08997 * 109.47145 * 60.00077 * 11 10 9 26 26 H 1.08995 * 109.47360 * 299.99515 * 11 10 9 27 27 H 1.07992 * 126.04231 * 0.02562 * 13 12 11 28 28 H 1.08002 * 125.89548 * 179.97438 * 14 13 12 29 29 H 1.08996 * 109.47009 * 210.00717 * 17 16 12 30 30 H 1.09011 * 109.46832 * 330.00309 * 17 16 12 31 31 H 1.09003 * 115.54771 * 29.33415 * 18 17 16 32 32 H 1.08997 * 117.49872 * 359.97438 * 19 18 17 33 33 H 1.09004 * 117.49641 * 145.02198 * 19 18 17 34 34 H 1.09002 * 117.50298 * 214.97878 * 20 18 17 35 35 H 1.08998 * 117.50434 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5151 -6.0260 -0.0018 13 6 2.9792 -6.6822 1.0867 14 6 3.8979 -7.6428 0.6508 15 7 3.9865 -7.5619 -0.6520 16 7 3.1188 -6.5522 -1.0879 17 6 2.9081 -6.1372 -2.4770 18 6 3.9011 -5.0296 -2.8345 19 6 3.3295 -3.6543 -3.1848 20 6 3.9210 -4.5394 -4.2837 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8407 -3.5486 0.7808 25 1 0.8809 -4.9812 -0.8913 26 1 0.8803 -4.9818 0.8886 27 1 2.6913 -6.4972 2.1110 28 1 4.4436 -8.3290 1.2814 29 1 3.0614 -6.9900 -3.1382 30 1 1.8904 -5.7646 -2.5945 31 1 4.8507 -5.0591 -2.3002 32 1 2.2459 -3.5387 -3.1609 33 1 3.9030 -2.7786 -2.8807 34 1 4.8836 -4.2459 -4.7026 35 1 3.2264 -5.0056 -4.9824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825721499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:54 Heat of formation + Delta-G solvation = 79.839290 kcal Electronic energy + Delta-G solvation = -16459.709329 eV Core-core repulsion = 13880.291782 eV Total energy + Delta-G solvation = -2579.417548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14564 -38.34640 -37.12846 -34.65815 -33.56565 -31.70127 -28.77377 -27.80614 -25.85473 -23.40573 -23.15411 -22.39314 -21.62882 -20.53640 -18.72774 -17.77017 -16.70668 -16.39825 -16.17622 -15.88699 -15.26920 -15.09107 -14.81989 -14.43042 -14.31174 -13.84158 -13.52282 -13.29817 -12.83222 -12.67719 -12.61566 -12.46043 -12.30503 -11.99645 -11.60944 -11.31651 -11.27501 -10.85103 -10.64834 -10.21351 -9.46636 -9.09674 -8.20707 -6.29693 0.91517 1.40834 1.42429 1.54839 1.62285 1.94642 2.41092 2.96366 3.13789 3.51786 3.68331 3.83036 3.85362 4.09045 4.13598 4.19074 4.30970 4.52247 4.54494 4.66453 4.82083 4.84815 4.88292 5.10181 5.17197 5.26230 5.28586 5.31630 5.33730 5.63097 5.82273 6.03019 6.12030 6.43039 6.66642 6.83747 6.90184 7.40657 8.90775 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.006726 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220342 B = 4162.000369 C = 4838.090941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.215 3.785 10 N -0.669 5.669 11 C 0.123 3.877 12 C 0.094 3.906 13 C -0.285 4.285 14 C 0.045 3.955 15 N -0.329 5.329 16 N -0.361 5.361 17 C 0.167 3.833 18 C -0.166 4.166 19 C -0.156 4.156 20 C -0.155 4.155 21 H 0.264 0.736 22 H 0.006 0.994 23 H -0.037 1.037 24 H 0.334 0.666 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.158 0.842 28 H 0.213 0.787 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -12.122 -3.420 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.562 4.562 8 H 0.078 0.922 9 C 0.087 3.913 10 N -0.299 5.299 11 C -0.008 4.008 12 C -0.034 4.034 13 C -0.315 4.315 14 C -0.140 4.140 15 N -0.150 5.150 16 N -0.143 5.143 17 C 0.047 3.953 18 C -0.185 4.185 19 C -0.193 4.193 20 C -0.193 4.193 21 H 0.073 0.927 22 H 0.024 0.976 23 H -0.019 1.019 24 H 0.150 0.850 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.229 0.771 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.103 -12.439 -5.316 14.840 hybrid contribution -0.610 1.398 1.836 2.387 sum 5.493 -11.041 -3.480 12.813 Atomic orbital electron populations 1.70070 1.07575 1.27772 1.51873 1.25806 0.95645 1.02898 0.94894 0.85408 0.78928 0.79050 0.77661 1.19040 1.20512 1.20523 1.21466 0.93549 0.91284 1.49924 0.92171 1.19170 0.90340 0.88212 0.93541 1.60555 1.19929 1.00113 1.49340 1.20392 0.92401 0.86430 1.01575 1.21137 0.97592 0.96629 0.88089 1.21530 1.06917 1.03508 0.99500 1.24293 0.98282 0.99381 0.92005 1.77245 1.14022 1.09407 1.14330 1.48663 1.31823 1.27060 1.06721 1.21316 0.99179 0.97326 0.77524 1.22328 1.00048 0.96011 1.00152 1.22711 1.00344 0.93471 1.02779 1.23115 1.03536 1.02443 0.90159 0.92716 0.97555 1.01922 0.84958 0.90775 0.93040 0.82481 0.77053 0.87470 0.88715 0.89712 0.89810 0.90587 0.87755 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.52 -28.70 9.32 25.60 0.24 -28.46 16 8 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 9 C 0.21 10.82 5.44 85.56 0.47 11.29 16 10 N -0.67 -27.05 6.48 -521.99 -3.38 -30.43 16 11 C 0.12 4.17 5.86 85.56 0.50 4.67 16 12 C 0.09 2.97 6.44 41.41 0.27 3.23 16 13 C -0.28 -8.03 10.72 21.99 0.24 -7.79 16 14 C 0.05 1.19 12.03 85.24 1.03 2.21 16 15 N -0.33 -10.12 12.58 -57.02 -0.72 -10.84 16 16 N -0.36 -11.09 3.61 -334.70 -1.21 -12.30 16 17 C 0.17 4.44 6.53 86.38 0.56 5.01 16 18 C -0.17 -4.65 6.01 -10.80 -0.06 -4.72 16 19 C -0.16 -4.81 10.18 30.59 0.31 -4.50 16 20 C -0.16 -3.55 10.25 30.59 0.31 -3.24 16 21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 22 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 23 H -0.04 -2.01 8.14 -2.38 -0.02 -2.03 16 24 H 0.33 13.50 8.72 -89.69 -0.78 12.72 16 25 H 0.07 2.49 7.24 -2.39 -0.02 2.47 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.21 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.44 6.88 -2.38 -0.02 2.42 16 31 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.08 2.82 8.03 -2.39 -0.02 2.80 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.81 303.28 1.61 -61.20 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.29 Total: 22.72 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 4.32 Total: -21.50 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -5.02 Total: -108.04 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.81 1.61 -61.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825721499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.041 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds