Wall clock time and date at job start Sun Mar 29 2020 22:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 C 1.38121 * 120.40019 * 74.72430 * 5 2 1 7 7 C 1.39628 * 118.33126 * 179.80783 * 6 5 2 8 8 N 1.38544 * 120.52873 * 180.21912 * 7 6 5 9 9 C 1.46499 * 120.00204 * 0.24951 * 8 7 6 10 10 C 1.50691 * 109.47234 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99925 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00143 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47159 * 89.99913 * 14 12 10 16 16 H 1.48495 * 109.47024 * 210.00215 * 14 12 10 17 17 H 1.48504 * 109.46998 * 329.99763 * 14 12 10 18 18 N 1.32994 * 118.93676 * 0.46660 * 7 6 5 19 19 C 1.31742 * 120.68691 * 359.74899 * 18 7 6 20 20 N 1.31788 * 121.83445 * 0.02562 * 19 18 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.07993 * 120.83435 * 359.97438 * 6 5 2 31 31 H 0.96995 * 119.99700 * 180.25403 * 8 7 6 32 32 H 1.09004 * 109.46999 * 300.00522 * 9 8 7 33 33 H 1.08998 * 109.47246 * 59.99875 * 9 8 7 34 34 H 0.96994 * 120.00060 * 179.97438 * 13 12 10 35 35 H 1.08009 * 119.08346 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.9694 -0.0969 -2.4664 7 6 2.4507 -0.7930 -3.5769 8 7 2.4139 -0.2192 -4.8374 9 6 1.8718 1.1306 -5.0122 10 6 1.9453 1.5169 -6.4669 11 1 2.3552 0.8263 -7.1890 12 6 1.4901 2.7525 -6.8760 13 7 0.9914 3.5937 -5.9966 14 14 1.5818 3.2317 -8.6791 15 1 0.3307 2.8199 -9.3650 16 1 1.7473 4.7030 -8.7925 17 1 2.7405 2.5529 -9.3133 18 7 2.9406 -2.0176 -3.4061 19 6 2.9771 -2.5662 -2.2089 20 7 2.5348 -1.9337 -1.1406 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 1.5606 0.8972 -2.5707 31 1 2.7470 -0.7111 -5.6041 32 1 0.8327 1.1501 -4.6834 33 1 2.4539 1.8356 -4.4188 34 1 0.6715 4.4630 -6.2843 35 1 3.3808 -3.5620 -2.0998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853547515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:58 Heat of formation + Delta-G solvation = 25.341998 kcal Electronic energy + Delta-G solvation = -16379.872276 eV Core-core repulsion = 13798.091549 eV Total energy + Delta-G solvation = -2581.780728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51482 -37.00844 -35.59520 -32.96054 -31.62856 -30.11766 -27.43929 -27.13403 -26.70734 -24.02256 -23.33648 -21.72839 -19.38590 -17.73710 -16.43345 -16.13885 -14.93161 -14.73932 -14.59860 -14.37371 -14.06086 -13.74590 -13.46421 -13.20224 -12.70832 -12.17446 -12.13883 -11.97021 -11.51132 -11.09669 -11.06677 -11.01793 -10.90618 -10.84545 -10.36964 -10.31847 -9.98719 -9.52086 -9.22836 -8.68589 -8.62759 -7.27388 -6.31323 -4.37412 1.61260 1.99982 3.18125 3.24696 3.27508 3.89911 4.27522 4.41182 4.43287 4.77337 5.06532 5.11745 5.15319 5.25103 5.50047 5.73624 5.76018 5.79688 5.93002 5.95525 6.00823 6.04088 6.18213 6.28217 6.31777 6.43050 6.54517 6.81260 7.03506 7.21889 7.40689 7.52410 7.79034 8.12009 8.43787 8.68650 8.90511 9.29706 10.79155 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.005943 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.585499 B = 4710.065161 C = 5380.289198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.123 4.123 5 C 0.205 3.795 6 C -0.287 4.287 7 C 0.437 3.563 8 N -0.688 5.688 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.065 0.935 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.906 3.094 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.272 1.272 18 N -0.598 5.598 19 C 0.329 3.671 20 N -0.577 5.577 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.400 0.600 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.267 0.733 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -5.606 10.689 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.199 4.199 4 C -0.180 4.180 5 C 0.064 3.936 6 C -0.316 4.316 7 C 0.191 3.809 8 N -0.314 5.314 9 C 0.130 3.870 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.733 3.267 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.196 1.196 18 N -0.325 5.325 19 C 0.038 3.962 20 N -0.298 5.298 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.159 0.841 31 H 0.235 0.765 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.737 -6.026 10.727 12.325 hybrid contribution -0.163 0.969 -1.512 1.804 sum 0.574 -5.057 9.214 10.526 Atomic orbital electron populations 1.21853 0.93148 1.02091 1.02311 1.19474 0.95827 0.94778 0.91873 1.21931 1.01256 0.94209 1.02493 1.21643 1.01076 1.00503 0.94822 1.21052 0.89612 0.89639 0.93304 1.21965 1.12352 1.04377 0.92881 1.18794 0.86814 0.87810 0.87504 1.45434 1.63030 1.18744 1.04165 1.19283 0.93923 0.75933 0.97816 1.21149 1.43204 1.01491 0.92262 0.91668 1.24918 0.94461 0.95855 0.98558 1.69931 1.40178 1.08279 1.34105 0.86358 0.78688 0.77775 0.83843 1.20339 1.20890 1.19642 1.67954 1.25111 1.11794 1.27596 1.24397 0.90775 0.98513 0.82489 1.68124 1.18196 1.09904 1.33569 0.92032 0.91953 0.92551 0.92020 0.92551 0.91606 0.91720 0.92721 0.93210 0.84095 0.76533 0.95548 0.95521 0.92291 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.41 37.16 0.31 -1.40 16 2 C -0.02 -0.25 0.88 -155.66 -0.14 -0.39 16 3 C -0.14 -1.83 8.10 37.15 0.30 -1.53 16 4 C -0.12 -1.50 7.83 37.16 0.29 -1.21 16 5 C 0.20 3.47 5.56 -82.33 -0.46 3.01 16 6 C -0.29 -5.47 8.42 -39.11 -0.33 -5.80 16 7 C 0.44 8.93 7.71 -154.77 -1.19 7.74 16 8 N -0.69 -14.85 5.70 -61.45 -0.35 -15.20 16 9 C 0.25 6.17 4.68 -5.20 -0.02 6.15 16 10 C -0.54 -14.30 9.28 -34.44 -0.32 -14.62 16 11 H 0.07 1.66 7.60 -52.49 -0.40 1.26 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 14 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 N -0.60 -11.42 10.47 -13.81 -0.14 -11.56 16 19 C 0.33 5.46 12.28 -92.20 -1.13 4.33 16 20 N -0.58 -9.73 9.19 -10.88 -0.10 -9.83 16 21 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.93 6.79 -51.93 -0.35 0.57 16 27 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.14 2.74 5.65 -52.49 -0.30 2.45 16 31 H 0.40 8.30 8.44 -40.82 -0.34 7.95 16 32 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 33 H 0.03 0.70 7.98 -51.93 -0.41 0.28 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.18 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -28.12 293.77 -8.38 -36.50 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.15 Total: 6.26 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.79 Total: -2.06 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.14 Total: -60.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -8.38 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.846 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds