Wall clock time and date at job start Sun Mar 29 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 C 1.38121 * 120.40019 * 74.72430 * 5 2 1 7 7 C 1.39628 * 118.33126 * 179.80783 * 6 5 2 8 8 N 1.38544 * 120.52873 * 180.21912 * 7 6 5 9 9 C 1.46499 * 120.00204 * 0.24951 * 8 7 6 10 10 C 1.50691 * 109.47234 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00075 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99925 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00143 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47159 * 89.99913 * 14 12 10 16 16 H 1.48495 * 109.47024 * 210.00215 * 14 12 10 17 17 H 1.48504 * 109.46998 * 329.99763 * 14 12 10 18 18 N 1.32994 * 118.93676 * 0.46660 * 7 6 5 19 19 C 1.31742 * 120.68691 * 359.74899 * 18 7 6 20 20 N 1.31788 * 121.83445 * 0.02562 * 19 18 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.07993 * 120.83435 * 359.97438 * 6 5 2 31 31 H 0.96995 * 119.99700 * 180.25403 * 8 7 6 32 32 H 1.09004 * 109.46999 * 300.00522 * 9 8 7 33 33 H 1.08998 * 109.47246 * 59.99875 * 9 8 7 34 34 H 0.96994 * 120.00060 * 179.97438 * 13 12 10 35 35 H 1.08009 * 119.08346 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.9694 -0.0969 -2.4664 7 6 2.4507 -0.7930 -3.5769 8 7 2.4139 -0.2192 -4.8374 9 6 1.8718 1.1306 -5.0122 10 6 1.9453 1.5169 -6.4669 11 1 2.3552 0.8263 -7.1890 12 6 1.4901 2.7525 -6.8760 13 7 0.9914 3.5937 -5.9966 14 14 1.5818 3.2317 -8.6791 15 1 0.3307 2.8199 -9.3650 16 1 1.7473 4.7030 -8.7925 17 1 2.7405 2.5529 -9.3133 18 7 2.9406 -2.0176 -3.4061 19 6 2.9771 -2.5662 -2.2089 20 7 2.5348 -1.9337 -1.1406 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 1.5606 0.8972 -2.5707 31 1 2.7470 -0.7111 -5.6041 32 1 0.8327 1.1501 -4.6834 33 1 2.4539 1.8356 -4.4188 34 1 0.6715 4.4630 -6.2843 35 1 3.3808 -3.5620 -2.0998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853547515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:57 Heat of formation + Delta-G solvation = 9.835469 kcal Electronic energy + Delta-G solvation = -16380.544690 eV Core-core repulsion = 13798.091549 eV Total energy + Delta-G solvation = -2582.453141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94251 -38.29293 -37.19830 -34.87378 -33.13678 -31.64269 -29.07979 -28.16458 -28.01062 -25.56741 -24.92932 -23.38689 -20.69850 -19.39120 -18.08221 -17.71636 -16.72848 -16.20485 -16.07418 -15.78722 -15.46289 -15.04776 -14.82324 -14.59183 -14.39388 -14.07517 -13.18542 -12.94532 -12.88984 -12.82464 -12.55682 -12.28719 -12.17463 -12.12863 -11.98671 -11.78368 -11.55743 -11.31502 -10.80668 -10.56476 -10.07617 -8.94765 -8.34942 -6.49074 0.19673 0.48757 1.41423 1.41941 1.53251 2.21279 2.43931 2.98546 3.02790 3.17058 3.49865 3.84452 4.04967 4.07237 4.14909 4.43011 4.62781 4.70630 4.77613 4.83780 4.89412 4.92258 5.01983 5.06277 5.16941 5.17350 5.22925 5.39363 5.42155 5.53068 5.62581 5.76094 5.87660 6.45840 6.58547 6.86189 7.22225 7.42096 8.76507 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.005943 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.585499 B = 4710.065161 C = 5380.289198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.022 4.022 3 C -0.138 4.138 4 C -0.116 4.116 5 C 0.212 3.788 6 C -0.305 4.305 7 C 0.420 3.580 8 N -0.695 5.695 9 C 0.274 3.726 10 C -0.562 4.562 11 H 0.071 0.929 12 C 0.016 3.984 13 N -0.921 5.921 14 Si 0.977 3.023 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.264 1.264 18 N -0.608 5.608 19 C 0.328 3.672 20 N -0.572 5.572 21 H 0.044 0.956 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.402 0.598 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.271 0.729 35 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 -6.282 11.463 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 C -0.196 4.196 4 C -0.173 4.173 5 C 0.070 3.930 6 C -0.334 4.334 7 C 0.176 3.824 8 N -0.323 5.323 9 C 0.152 3.848 10 C -0.600 4.600 11 H 0.089 0.911 12 C -0.185 4.185 13 N -0.559 5.559 14 Si 0.801 3.199 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.334 5.334 19 C 0.039 3.961 20 N -0.292 5.292 21 H 0.063 0.937 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.237 0.763 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.080 0.920 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.892 -6.744 11.527 13.385 hybrid contribution -0.196 1.101 -1.618 1.967 sum 0.696 -5.642 9.909 11.424 Atomic orbital electron populations 1.21840 0.92107 1.02183 1.02918 1.19665 0.96606 0.94915 0.91107 1.21916 1.00885 0.93873 1.02937 1.21598 1.00605 1.00339 0.94791 1.21629 0.88062 0.89570 0.93767 1.21990 1.13471 1.04192 0.93722 1.18983 0.87549 0.88692 0.87224 1.45111 1.64245 1.17901 1.05010 1.18766 0.92209 0.77055 0.96791 1.21507 1.43405 1.02030 0.93077 0.91115 1.25842 0.93819 0.95710 1.03140 1.70045 1.40850 1.08739 1.36273 0.85264 0.78969 0.77479 0.78212 1.19657 1.20407 1.18844 1.68000 1.25358 1.11147 1.28944 1.25295 0.89547 0.99729 0.81558 1.68279 1.17816 1.09645 1.33496 0.93718 0.89094 0.92692 0.89165 0.93114 0.93567 0.92103 0.93374 0.90516 0.85435 0.76262 0.97901 0.97870 0.91990 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.41 71.98 0.61 -2.53 16 2 C -0.02 -0.57 0.88 -52.93 -0.05 -0.62 16 3 C -0.14 -3.46 8.10 71.98 0.58 -2.88 16 4 C -0.12 -2.52 7.83 71.98 0.56 -1.96 16 5 C 0.21 7.06 5.56 42.42 0.24 7.30 16 6 C -0.31 -11.97 8.42 22.58 0.19 -11.78 16 7 C 0.42 17.53 7.71 133.16 1.03 18.56 16 8 N -0.69 -31.07 5.70 -348.33 -1.99 -33.06 16 9 C 0.27 14.09 4.68 85.63 0.40 14.49 16 10 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 11 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 12 C 0.02 0.84 5.46 84.66 0.46 1.30 16 13 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 14 Si 0.98 41.78 29.54 68.60 2.03 43.80 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 18 N -0.61 -22.92 10.47 -197.61 -2.07 -24.99 16 19 C 0.33 10.32 12.28 180.90 2.22 12.54 16 20 N -0.57 -18.41 9.19 -188.33 -1.73 -20.14 16 21 H 0.04 1.20 8.11 -2.39 -0.02 1.18 16 22 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.33 6.79 -2.39 -0.02 1.31 16 27 H 0.06 1.38 7.88 -2.39 -0.02 1.36 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.13 5.30 5.65 -2.91 -0.02 5.29 16 31 H 0.40 17.14 8.44 -92.71 -0.78 16.36 16 32 H 0.00 0.17 7.96 -2.38 -0.02 0.15 16 33 H 0.00 0.19 7.98 -2.39 -0.02 0.17 16 34 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.23 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -60.62 293.77 3.30 -57.32 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.30 Total: 24.49 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.48 Total: 4.44 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -5.50 Total: -130.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -60.62 3.30 -57.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.158 kcal (2) G-P(sol) polarization free energy of solvation -60.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds