Wall clock time and date at job start Sun Mar 29 2020 22:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00333 * 3 2 1 5 5 H 1.48503 * 109.47417 * 30.00061 * 3 2 1 6 6 H 1.48504 * 109.47283 * 150.00091 * 3 2 1 7 7 C 1.37874 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99802 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00125 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46954 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99727 * 179.97438 * 10 9 7 12 12 C 1.52969 * 109.41158 * 155.00097 * 11 10 9 13 13 C 1.53226 * 109.40367 * 183.70668 * 12 11 10 14 14 C 1.51272 * 108.53865 * 305.37140 * 13 12 11 15 15 C 1.30994 * 120.85021 * 231.32981 * 14 13 12 16 16 C 1.51411 * 136.31440 * 179.97438 * 15 14 13 17 17 C 1.53676 * 87.49135 * 153.95565 * 16 15 14 18 18 C 1.51405 * 136.31879 * 359.97438 * 15 14 13 19 19 C 1.51271 * 118.29895 * 51.59711 * 14 13 12 20 20 C 1.52961 * 109.41660 * 275.35141 * 11 10 9 21 21 H 0.97001 * 119.99542 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47180 * 59.99961 * 9 7 2 23 23 H 1.08998 * 109.46785 * 299.99743 * 9 7 2 24 24 H 1.00900 * 111.00015 * 56.04538 * 10 9 7 25 25 H 1.09002 * 109.41468 * 35.14336 * 11 10 9 26 26 H 1.09001 * 109.47817 * 63.72574 * 12 11 10 27 27 H 1.09000 * 109.48906 * 303.69110 * 12 11 10 28 28 H 1.09000 * 109.62632 * 185.65882 * 13 12 11 29 29 H 1.09001 * 109.62879 * 65.08314 * 13 12 11 30 30 H 1.09002 * 113.56223 * 268.62581 * 16 15 14 31 31 H 1.09001 * 113.56107 * 39.28493 * 16 15 14 32 32 H 1.08993 * 113.82858 * 139.88818 * 17 16 15 33 33 H 1.08998 * 113.82434 * 271.46766 * 17 16 15 34 34 H 1.08995 * 113.55869 * 320.64667 * 18 15 14 35 35 H 1.09004 * 113.55831 * 91.30372 * 18 15 14 36 36 H 1.09002 * 109.62361 * 68.11873 * 19 14 13 37 37 H 1.09001 * 109.62871 * 188.68777 * 19 14 13 38 38 H 1.08995 * 109.48005 * 296.28017 * 20 11 10 39 39 H 1.09000 * 109.47866 * 56.30255 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9070 0.0001 12 6 2.4120 -5.9775 -0.6096 13 6 1.6487 -7.3034 -0.6940 14 6 1.1216 -7.6433 0.6825 15 6 1.3411 -8.8202 1.2142 16 6 0.9958 -9.5163 2.5137 17 6 1.1047 -10.8465 1.7518 18 6 2.0533 -10.0916 0.8035 19 6 0.3291 -6.5915 1.4269 20 6 1.1450 -5.2894 1.4366 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5571 0.8897 24 1 2.8404 -3.5487 0.7808 25 1 0.5933 -4.8249 -0.5914 26 1 3.2950 -6.1055 0.0165 27 1 2.7169 -5.6693 -1.6097 28 1 2.3206 -8.0917 -1.0336 29 1 0.8161 -7.2030 -1.3903 30 1 1.7533 -9.3944 3.2880 31 1 -0.0113 -9.2994 2.8699 32 1 1.5884 -11.6410 2.3199 33 1 0.1730 -11.1627 1.2827 34 1 1.9152 -10.3486 -0.2467 35 1 3.0980 -10.1251 1.1129 36 1 -0.6234 -6.4263 0.9233 37 1 0.1528 -6.9221 2.4505 38 1 2.0580 -5.4337 2.0142 39 1 0.5520 -4.4933 1.8869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877482458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:12 Heat of formation + Delta-G solvation = 11.361854 kcal Electronic energy + Delta-G solvation = -16407.227362 eV Core-core repulsion = 13928.380754 eV Total energy + Delta-G solvation = -2478.846609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33240 -37.55630 -34.28681 -32.33545 -30.81115 -29.54025 -26.33424 -25.81451 -24.13672 -22.47450 -21.80439 -21.00141 -19.76606 -17.32493 -16.39925 -15.62910 -15.38585 -14.67896 -14.25332 -13.99877 -13.74116 -13.46429 -13.28612 -12.51798 -12.26298 -12.14408 -12.01054 -11.97324 -11.56978 -11.36471 -11.20409 -10.90825 -10.75167 -10.71578 -10.53511 -10.48837 -10.14839 -9.77080 -9.69703 -9.12835 -8.47605 -8.42734 -7.20541 -6.01048 -4.02745 2.22452 3.33585 3.39168 3.43095 4.36691 4.44879 4.60202 4.63435 5.01454 5.05333 5.16865 5.29624 5.34605 5.38465 5.51411 5.52511 5.57611 5.65769 5.69302 5.72688 5.77922 5.83874 6.04510 6.13096 6.13885 6.18618 6.25217 6.37578 6.45519 6.49455 6.70365 6.81440 7.15435 7.31359 7.48339 7.82153 8.16806 8.45216 8.66963 9.07061 9.62100 11.10005 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.063581 B = 0.004196 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.278954 B = 6671.644878 C = 6834.030003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.087 3.913 12 C -0.100 4.100 13 C -0.078 4.078 14 C -0.081 4.081 15 C -0.180 4.180 16 C -0.100 4.100 17 C -0.138 4.138 18 C -0.099 4.099 19 C -0.075 4.075 20 C -0.142 4.142 21 H 0.261 0.739 22 H 0.026 0.974 23 H -0.013 1.013 24 H 0.328 0.672 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -18.971 2.993 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.024 4.024 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.081 4.081 15 C -0.180 4.180 16 C -0.137 4.137 17 C -0.175 4.175 18 C -0.136 4.136 19 C -0.113 4.113 20 C -0.182 4.182 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.005 0.995 24 H 0.144 0.856 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.739 -18.809 2.298 19.028 hybrid contribution -0.024 0.922 0.971 1.339 sum 1.715 -17.886 3.269 18.263 Atomic orbital electron populations 1.69971 1.06066 1.26716 1.51056 1.24993 0.94876 0.99345 0.95406 0.86491 0.79686 0.83050 0.78116 1.20629 1.21335 1.19864 1.21215 0.93519 0.90354 1.50142 0.92023 1.19573 0.90656 0.87381 0.95670 1.60764 1.20838 1.01125 1.48734 1.21507 0.96561 0.90616 0.93748 1.21513 0.97992 0.92727 1.01613 1.20691 0.99571 0.97899 0.93440 1.20961 0.98506 0.91978 0.96684 1.22148 1.03349 0.93903 0.98588 1.22032 1.01458 0.94814 0.95380 1.22708 0.99997 0.96150 0.98672 1.22068 0.98431 0.93551 0.99530 1.20706 0.97831 0.93746 0.99023 1.22373 0.99941 0.96386 0.99456 0.92963 0.95556 0.99527 0.85552 0.91232 0.92460 0.91163 0.91737 0.91145 0.89704 0.91591 0.91316 0.90160 0.91566 0.89690 0.91097 0.91932 0.92253 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.13 5.24 -4.97 -0.03 5.11 16 10 N -0.69 -14.88 6.23 -108.03 -0.67 -15.56 16 11 C 0.09 1.55 2.36 -67.75 -0.16 1.39 16 12 C -0.10 -1.52 5.54 -26.63 -0.15 -1.67 16 13 C -0.08 -1.02 6.03 -27.49 -0.17 -1.19 16 14 C -0.08 -1.07 5.34 -100.50 -0.54 -1.61 16 15 C -0.18 -2.13 6.62 -100.38 -0.66 -2.80 16 16 C -0.10 -1.01 7.45 -27.40 -0.20 -1.21 16 17 C -0.14 -1.21 8.20 -25.91 -0.21 -1.42 16 18 C -0.10 -0.97 7.47 -27.28 -0.20 -1.18 16 19 C -0.08 -1.04 6.06 -27.26 -0.17 -1.21 16 20 C -0.14 -2.30 5.21 -26.41 -0.14 -2.44 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.75 8.05 -51.93 -0.42 0.34 16 23 H -0.01 -0.36 7.35 -51.93 -0.38 -0.74 16 24 H 0.33 6.87 8.47 -39.29 -0.33 6.54 16 25 H 0.07 1.33 7.80 -51.93 -0.40 0.93 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.76 7.57 -51.93 -0.39 0.36 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.20 7.35 -51.93 -0.38 0.81 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -29.67 310.52 -10.22 -39.89 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.90 Total: 2.26 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.04 Total: -21.80 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.06 Total: -41.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.67 -10.22 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.254 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds