Wall clock time and date at job start Sun Mar 29 2020 22:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47198 * 270.00333 * 3 2 1 5 5 H 1.48503 * 109.47417 * 30.00061 * 3 2 1 6 6 H 1.48504 * 109.47283 * 150.00091 * 3 2 1 7 7 C 1.37874 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99802 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00125 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46954 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99727 * 179.97438 * 10 9 7 12 12 C 1.52969 * 109.41158 * 155.00097 * 11 10 9 13 13 C 1.53226 * 109.40367 * 183.70668 * 12 11 10 14 14 C 1.51272 * 108.53865 * 305.37140 * 13 12 11 15 15 C 1.30994 * 120.85021 * 231.32981 * 14 13 12 16 16 C 1.51411 * 136.31440 * 179.97438 * 15 14 13 17 17 C 1.53676 * 87.49135 * 153.95565 * 16 15 14 18 18 C 1.51405 * 136.31879 * 359.97438 * 15 14 13 19 19 C 1.51271 * 118.29895 * 51.59711 * 14 13 12 20 20 C 1.52961 * 109.41660 * 275.35141 * 11 10 9 21 21 H 0.97001 * 119.99542 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47180 * 59.99961 * 9 7 2 23 23 H 1.08998 * 109.46785 * 299.99743 * 9 7 2 24 24 H 1.00900 * 111.00015 * 56.04538 * 10 9 7 25 25 H 1.09002 * 109.41468 * 35.14336 * 11 10 9 26 26 H 1.09001 * 109.47817 * 63.72574 * 12 11 10 27 27 H 1.09000 * 109.48906 * 303.69110 * 12 11 10 28 28 H 1.09000 * 109.62632 * 185.65882 * 13 12 11 29 29 H 1.09001 * 109.62879 * 65.08314 * 13 12 11 30 30 H 1.09002 * 113.56223 * 268.62581 * 16 15 14 31 31 H 1.09001 * 113.56107 * 39.28493 * 16 15 14 32 32 H 1.08993 * 113.82858 * 139.88818 * 17 16 15 33 33 H 1.08998 * 113.82434 * 271.46766 * 17 16 15 34 34 H 1.08995 * 113.55869 * 320.64667 * 18 15 14 35 35 H 1.09004 * 113.55831 * 91.30372 * 18 15 14 36 36 H 1.09002 * 109.62361 * 68.11873 * 19 14 13 37 37 H 1.09001 * 109.62871 * 188.68777 * 19 14 13 38 38 H 1.08995 * 109.48005 * 296.28017 * 20 11 10 39 39 H 1.09000 * 109.47866 * 56.30255 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5052 -4.9070 0.0001 12 6 2.4120 -5.9775 -0.6096 13 6 1.6487 -7.3034 -0.6940 14 6 1.1216 -7.6433 0.6825 15 6 1.3411 -8.8202 1.2142 16 6 0.9958 -9.5163 2.5137 17 6 1.1047 -10.8465 1.7518 18 6 2.0533 -10.0916 0.8035 19 6 0.3291 -6.5915 1.4269 20 6 1.1450 -5.2894 1.4366 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5571 0.8897 24 1 2.8404 -3.5487 0.7808 25 1 0.5933 -4.8249 -0.5914 26 1 3.2950 -6.1055 0.0165 27 1 2.7169 -5.6693 -1.6097 28 1 2.3206 -8.0917 -1.0336 29 1 0.8161 -7.2030 -1.3903 30 1 1.7533 -9.3944 3.2880 31 1 -0.0113 -9.2994 2.8699 32 1 1.5884 -11.6410 2.3199 33 1 0.1730 -11.1627 1.2827 34 1 1.9152 -10.3486 -0.2467 35 1 3.0980 -10.1251 1.1129 36 1 -0.6234 -6.4263 0.9233 37 1 0.1528 -6.9221 2.4505 38 1 2.0580 -5.4337 2.0142 39 1 0.5520 -4.4933 1.8869 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877482458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:11 Heat of formation + Delta-G solvation = -5.266668 kcal Electronic energy + Delta-G solvation = -16407.948429 eV Core-core repulsion = 13928.380754 eV Total energy + Delta-G solvation = -2479.567675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35570 -38.75313 -35.98865 -34.28974 -31.99638 -31.04143 -28.17036 -26.60844 -25.46557 -23.79641 -23.41576 -22.32238 -21.01390 -18.66570 -18.12492 -16.79648 -16.66719 -16.20885 -15.54650 -15.46429 -15.31337 -14.75801 -14.62161 -14.01214 -13.69898 -13.48060 -13.27791 -13.14299 -12.93858 -12.75473 -12.60636 -12.46626 -12.20243 -12.02764 -11.98148 -11.68044 -11.60699 -11.39487 -11.08256 -10.74154 -10.65442 -9.41580 -9.03730 -8.22828 -6.34337 1.26225 1.40607 1.42767 1.53990 2.39772 3.10129 3.43723 3.58379 3.76537 3.85260 3.87927 4.12716 4.27571 4.29290 4.34797 4.38012 4.51189 4.63848 4.81414 4.84146 4.84554 4.85146 4.91717 4.99345 5.05055 5.08408 5.12101 5.14029 5.22522 5.31504 5.38505 5.41549 5.48142 5.61773 5.68969 6.03010 6.20310 6.47646 6.74201 6.90514 7.36775 8.88720 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.063581 B = 0.004196 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.278954 B = 6671.644878 C = 6834.030003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.685 5.685 11 C 0.085 3.915 12 C -0.090 4.090 13 C -0.070 4.070 14 C -0.108 4.108 15 C -0.174 4.174 16 C -0.105 4.105 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.068 4.068 20 C -0.134 4.134 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.038 1.038 24 H 0.333 0.667 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -20.325 3.422 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.314 5.314 11 C -0.025 4.025 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.174 4.174 16 C -0.142 4.142 17 C -0.167 4.167 18 C -0.136 4.136 19 C -0.106 4.106 20 C -0.173 4.173 21 H 0.074 0.926 22 H 0.013 0.987 23 H -0.020 1.020 24 H 0.150 0.850 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.106 -20.193 2.728 20.612 hybrid contribution -0.477 1.249 0.861 1.591 sum 2.629 -18.944 3.590 19.459 Atomic orbital electron populations 1.70104 1.07842 1.27989 1.51560 1.25980 0.95809 1.03456 0.94553 0.85310 0.78518 0.77846 0.78476 1.19836 1.20633 1.18669 1.21576 0.93822 0.91529 1.50589 0.91774 1.19189 0.90653 0.88922 0.92958 1.60676 1.20185 1.01494 1.49054 1.21599 0.96265 0.89683 0.94983 1.21400 0.97708 0.92854 1.00888 1.20610 0.99548 0.96862 0.93749 1.20813 1.00403 0.92580 0.96984 1.22551 1.01733 0.93751 0.99408 1.22160 1.01726 0.95363 0.94963 1.22697 0.99981 0.95921 0.98061 1.22172 0.99062 0.92167 1.00230 1.20599 0.97285 0.92763 0.99928 1.22220 1.00228 0.97016 0.97829 0.92624 0.98693 1.02002 0.84958 0.93269 0.91880 0.91807 0.89824 0.91387 0.88819 0.91651 0.89497 0.89919 0.91053 0.88610 0.91781 0.90790 0.91514 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.45 9.32 25.60 0.24 -31.21 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.68 5.24 85.56 0.45 12.13 16 10 N -0.69 -30.65 6.23 -495.70 -3.09 -33.74 16 11 C 0.08 3.13 2.36 44.89 0.11 3.24 16 12 C -0.09 -2.70 5.54 30.66 0.17 -2.53 16 13 C -0.07 -1.74 6.03 30.11 0.18 -1.56 16 14 C -0.11 -2.69 5.34 -16.12 -0.09 -2.78 16 15 C -0.17 -3.72 6.62 -16.04 -0.11 -3.82 16 16 C -0.11 -1.85 7.45 30.16 0.22 -1.62 16 17 C -0.13 -1.85 8.20 31.13 0.26 -1.59 16 18 C -0.10 -1.64 7.47 30.24 0.23 -1.41 16 19 C -0.07 -1.87 6.06 30.25 0.18 -1.69 16 20 C -0.13 -4.43 5.21 30.80 0.16 -4.27 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.31 8.05 -2.39 -0.02 -0.33 16 23 H -0.04 -2.23 7.35 -2.39 -0.02 -2.25 16 24 H 0.33 14.23 8.47 -89.69 -0.76 13.47 16 25 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.76 7.57 -2.39 -0.02 1.75 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.85 7.57 -2.39 -0.02 1.83 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.52 7.35 -2.39 -0.02 1.50 16 Total: -1.00 -64.28 310.52 1.93 -62.35 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.24 Total: 18.31 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.46 Total: -36.65 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -2.80 Total: -91.04 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.28 1.93 -62.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.087 kcal (2) G-P(sol) polarization free energy of solvation -64.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds