Wall clock time and date at job start Sun Mar 29 2020 21:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31809 * 119.12315 * 2 1 4 4 C 1.32313 * 120.81962 * 180.02562 * 3 2 1 5 5 C 1.38625 * 119.10233 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.80041 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47276 * 145.00063 * 6 5 4 8 8 C 1.53004 * 109.47156 * 264.99917 * 6 5 4 9 9 N 1.46901 * 109.46894 * 24.99545 * 6 5 4 10 10 C 1.46913 * 110.99618 * 155.00169 * 9 6 5 11 11 C 1.50698 * 109.46877 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00272 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00249 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47447 * 60.00328 * 15 13 11 17 17 H 1.48503 * 109.46783 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47088 * 299.99824 * 15 13 11 19 19 C 1.38570 * 118.39969 * 359.97438 * 5 4 3 20 20 C 1.50696 * 120.44897 * 180.02562 * 19 5 4 21 21 N 1.31783 * 119.12289 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47049 * 269.98054 * 1 2 3 23 23 H 1.08991 * 109.46898 * 29.97918 * 1 2 3 24 24 H 1.08997 * 109.47012 * 149.98187 * 1 2 3 25 25 H 1.08002 * 120.44898 * 180.27071 * 4 3 2 26 26 H 1.08992 * 109.46938 * 300.00290 * 8 6 5 27 27 H 1.09006 * 109.47039 * 59.99802 * 8 6 5 28 28 H 1.09002 * 109.47407 * 179.97438 * 8 6 5 29 29 H 1.00893 * 111.00404 * 278.95152 * 9 6 5 30 30 H 1.08993 * 109.46861 * 299.99845 * 10 9 6 31 31 H 1.08995 * 109.47286 * 60.00145 * 10 9 6 32 32 H 0.97001 * 120.00670 * 179.97438 * 14 13 11 33 33 H 1.09008 * 109.47091 * 90.00401 * 20 19 5 34 34 H 1.08997 * 109.47402 * 209.99802 * 20 19 5 35 35 H 1.09006 * 109.47468 * 330.00824 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 5.6879 -0.0002 -0.0017 7 1 6.0517 -0.8417 0.5878 8 6 6.1968 -0.1266 -1.4390 9 7 6.1780 1.2554 0.5826 10 6 7.5259 1.0850 1.1417 11 6 7.9939 2.3905 1.7312 12 1 7.3540 3.2598 1.6946 13 6 9.2386 2.4750 2.3181 14 7 10.0177 1.4165 2.3630 15 14 9.8185 4.0932 3.0494 16 1 8.8852 4.5126 4.1257 17 1 11.1810 3.9209 3.6144 18 1 9.8505 5.1323 1.9891 19 6 3.4714 -1.1904 0.0006 20 6 4.1962 -2.5116 0.0012 21 7 2.1484 -1.1512 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 3.9906 2.1375 0.0039 26 1 5.8331 -1.0581 -1.8726 27 1 5.8330 0.7150 -2.0286 28 1 7.2869 -0.1262 -1.4399 29 1 6.1599 2.0015 -0.0963 30 1 7.5025 0.3228 1.9204 31 1 8.2106 0.7765 0.3517 32 1 10.8936 1.4759 2.7756 33 1 4.3713 -2.8295 1.0291 34 1 3.5905 -3.2586 -0.5118 35 1 5.1511 -2.4024 -0.5129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877483546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:42 Heat of formation + Delta-G solvation = 32.886634 kcal Electronic energy + Delta-G solvation = -16252.663552 eV Core-core repulsion = 13671.209985 eV Total energy + Delta-G solvation = -2581.453568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99278 -36.85664 -34.33042 -33.33880 -32.23431 -29.97417 -28.88686 -27.55204 -26.01067 -23.63886 -22.59737 -21.56194 -20.42134 -17.50906 -16.69460 -15.82608 -15.29562 -14.89099 -14.46496 -14.04108 -13.93140 -13.42045 -13.17101 -12.86511 -12.61839 -12.36671 -12.28862 -12.24047 -12.11959 -11.82015 -11.38236 -11.20591 -10.84180 -10.74167 -10.38032 -10.28218 -9.94991 -9.29596 -8.97645 -8.81975 -8.53392 -7.46391 -6.08544 -4.10844 1.13419 1.32293 3.30953 3.35085 3.38169 3.90500 4.05471 4.30232 4.38620 4.76259 4.81696 5.14882 5.27766 5.31273 5.38917 5.50066 5.51242 5.54619 5.55973 5.59161 5.65211 5.81278 5.98589 6.11241 6.12243 6.27863 6.41702 6.69871 7.12337 7.24386 7.33912 7.70497 8.04131 8.24358 8.32915 8.48750 8.97338 9.54403 11.02369 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036033 B = 0.005388 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.872541 B = 5195.452014 C = 5654.014099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.298 3.702 3 N -0.526 5.526 4 C 0.172 3.828 5 C -0.166 4.166 6 C 0.126 3.874 7 H 0.088 0.912 8 C -0.175 4.175 9 N -0.684 5.684 10 C 0.196 3.804 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.171 3.829 20 C -0.109 4.109 21 N -0.524 5.524 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.173 0.827 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.331 0.669 30 H 0.028 0.972 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 -5.393 -6.762 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.031 3.969 3 N -0.241 5.241 4 C 0.006 3.994 5 C -0.170 4.170 6 C 0.014 3.986 7 H 0.106 0.894 8 C -0.234 4.234 9 N -0.314 5.314 10 C 0.070 3.930 11 C -0.556 4.556 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.024 3.976 20 C -0.166 4.166 21 N -0.240 5.240 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.190 0.810 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.046 0.954 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.702 -5.552 -6.077 15.984 hybrid contribution 1.965 0.830 -0.268 2.150 sum -11.737 -4.721 -6.344 14.153 Atomic orbital electron populations 1.20472 0.86264 1.03591 1.03479 1.23106 0.97893 0.83726 0.92204 1.68265 1.10390 1.30215 1.15242 1.23130 0.88527 0.99060 0.88644 1.21637 0.98857 0.94518 1.02015 1.20283 0.88018 0.96187 0.94106 0.89358 1.22488 1.02252 1.01579 0.97067 1.60774 1.29906 1.03695 1.37024 1.19583 0.81706 0.97826 0.93878 1.21120 1.00518 0.96298 1.37618 0.91973 1.24966 0.96581 0.96753 0.96105 1.69938 1.10030 1.28883 1.44815 0.86540 0.77675 0.83574 0.79501 1.20146 1.21327 1.20232 1.21496 0.89317 0.95701 0.91037 1.20826 0.99815 0.92213 1.03752 1.68029 1.09391 1.30661 1.15885 0.90068 0.89972 0.90118 0.81031 0.92748 0.92678 0.91354 0.85198 0.95364 0.99120 0.92795 0.89688 0.90308 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.32 36.01 0.37 -0.48 16 2 C 0.30 4.50 7.64 -157.19 -1.20 3.30 16 3 N -0.53 -8.59 10.33 -10.72 -0.11 -8.70 16 4 C 0.17 2.80 10.60 -17.20 -0.18 2.62 16 5 C -0.17 -2.64 5.08 -104.36 -0.53 -3.17 16 6 C 0.13 2.09 2.13 -68.86 -0.15 1.94 16 7 H 0.09 1.51 6.76 -51.93 -0.35 1.16 16 8 C -0.17 -2.52 8.98 37.16 0.33 -2.19 16 9 N -0.68 -13.63 5.29 -109.22 -0.58 -14.21 16 10 C 0.20 4.87 5.24 -4.97 -0.03 4.84 16 11 C -0.52 -14.17 9.32 -34.44 -0.32 -14.49 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 15 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.17 2.57 6.82 -82.25 -0.56 2.01 16 20 C -0.11 -1.28 9.48 36.00 0.34 -0.94 16 21 N -0.52 -8.14 10.27 -6.99 -0.07 -8.21 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.17 2.68 7.03 -52.49 -0.37 2.31 16 26 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 27 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.07 1.06 7.45 -51.93 -0.39 0.68 16 29 H 0.33 6.22 7.97 -39.30 -0.31 5.91 16 30 H 0.03 0.76 8.05 -51.93 -0.42 0.35 16 31 H -0.01 -0.23 7.44 -51.93 -0.39 -0.62 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.91 5.63 -51.93 -0.29 0.61 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -30.54 293.40 -7.60 -38.14 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.96 Total: 2.72 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.02 Total: -5.05 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.02 Total: -56.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.54 -7.60 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.030 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds