Wall clock time and date at job start Sun Mar 29 2020 21:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31809 * 119.12315 * 2 1 4 4 C 1.32313 * 120.81962 * 180.02562 * 3 2 1 5 5 C 1.38625 * 119.10233 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.80041 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47276 * 145.00063 * 6 5 4 8 8 C 1.53004 * 109.47156 * 264.99917 * 6 5 4 9 9 N 1.46901 * 109.46894 * 24.99545 * 6 5 4 10 10 C 1.46913 * 110.99618 * 155.00169 * 9 6 5 11 11 C 1.50698 * 109.46877 * 180.02562 * 10 9 6 12 12 H 1.07998 * 120.00272 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00249 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99788 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47447 * 60.00328 * 15 13 11 17 17 H 1.48503 * 109.46783 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47088 * 299.99824 * 15 13 11 19 19 C 1.38570 * 118.39969 * 359.97438 * 5 4 3 20 20 C 1.50696 * 120.44897 * 180.02562 * 19 5 4 21 21 N 1.31783 * 119.12289 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47049 * 269.98054 * 1 2 3 23 23 H 1.08991 * 109.46898 * 29.97918 * 1 2 3 24 24 H 1.08997 * 109.47012 * 149.98187 * 1 2 3 25 25 H 1.08002 * 120.44898 * 180.27071 * 4 3 2 26 26 H 1.08992 * 109.46938 * 300.00290 * 8 6 5 27 27 H 1.09006 * 109.47039 * 59.99802 * 8 6 5 28 28 H 1.09002 * 109.47407 * 179.97438 * 8 6 5 29 29 H 1.00893 * 111.00404 * 278.95152 * 9 6 5 30 30 H 1.08993 * 109.46861 * 299.99845 * 10 9 6 31 31 H 1.08995 * 109.47286 * 60.00145 * 10 9 6 32 32 H 0.97001 * 120.00670 * 179.97438 * 14 13 11 33 33 H 1.09008 * 109.47091 * 90.00401 * 20 19 5 34 34 H 1.08997 * 109.47402 * 209.99802 * 20 19 5 35 35 H 1.09006 * 109.47468 * 330.00824 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 5.6879 -0.0002 -0.0017 7 1 6.0517 -0.8417 0.5878 8 6 6.1968 -0.1266 -1.4390 9 7 6.1780 1.2554 0.5826 10 6 7.5259 1.0850 1.1417 11 6 7.9939 2.3905 1.7312 12 1 7.3540 3.2598 1.6946 13 6 9.2386 2.4750 2.3181 14 7 10.0177 1.4165 2.3630 15 14 9.8185 4.0932 3.0494 16 1 8.8852 4.5126 4.1257 17 1 11.1810 3.9209 3.6144 18 1 9.8505 5.1323 1.9891 19 6 3.4714 -1.1904 0.0006 20 6 4.1962 -2.5116 0.0012 21 7 2.1484 -1.1512 -0.0005 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 3.9906 2.1375 0.0039 26 1 5.8331 -1.0581 -1.8726 27 1 5.8330 0.7150 -2.0286 28 1 7.2869 -0.1262 -1.4399 29 1 6.1599 2.0015 -0.0963 30 1 7.5025 0.3228 1.9204 31 1 8.2106 0.7765 0.3517 32 1 10.8936 1.4759 2.7756 33 1 4.3713 -2.8295 1.0291 34 1 3.5905 -3.2586 -0.5118 35 1 5.1511 -2.4024 -0.5129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:42 Heat of formation + Delta-G solvation = 12.851553 kcal Electronic energy + Delta-G solvation = -16253.532339 eV Core-core repulsion = 13671.209985 eV Total energy + Delta-G solvation = -2582.322354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17809 -38.31040 -35.61852 -35.01781 -33.77588 -31.39978 -29.98600 -28.66211 -27.89168 -24.83773 -24.20152 -23.05885 -21.75480 -18.75455 -18.62922 -17.14745 -16.69571 -16.42735 -15.97830 -15.54586 -15.35123 -14.49862 -14.31812 -14.23589 -13.98501 -13.87205 -13.46252 -13.27016 -13.14224 -13.13073 -12.99300 -12.71886 -12.56588 -12.46499 -12.06114 -11.61989 -11.45380 -11.25191 -10.65318 -10.19068 -10.02071 -9.14882 -8.21211 -6.31312 -0.05195 0.10952 1.42629 1.45055 1.52884 2.40667 2.72407 3.01154 3.12852 3.16737 3.41832 3.62392 3.84921 4.06960 4.23511 4.27712 4.43650 4.53310 4.65916 4.67836 4.74627 4.82252 4.85182 4.97370 5.05887 5.10220 5.16526 5.24000 5.32725 5.56556 5.62843 6.00804 6.07804 6.42963 6.69538 6.89244 7.14581 7.39287 8.89710 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036033 B = 0.005388 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.872541 B = 5195.452014 C = 5654.014099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.289 3.711 3 N -0.542 5.542 4 C 0.161 3.839 5 C -0.178 4.178 6 C 0.132 3.868 7 H 0.081 0.919 8 C -0.167 4.167 9 N -0.684 5.684 10 C 0.213 3.787 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.169 3.831 20 C -0.108 4.108 21 N -0.533 5.533 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.172 0.828 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.338 0.662 30 H 0.000 1.000 31 H -0.027 1.027 32 H 0.265 0.735 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -5.254 -7.113 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.022 3.978 3 N -0.258 5.258 4 C -0.004 4.004 5 C -0.182 4.182 6 C 0.020 3.980 7 H 0.099 0.901 8 C -0.225 4.225 9 N -0.315 5.315 10 C 0.086 3.914 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.191 1.191 19 C 0.023 3.977 20 C -0.165 4.165 21 N -0.249 5.249 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.114 0.886 25 H 0.189 0.811 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.018 0.982 31 H -0.009 1.009 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.754 -5.411 -6.445 16.986 hybrid contribution 2.197 0.733 -0.174 2.323 sum -12.557 -4.677 -6.619 14.946 Atomic orbital electron populations 1.20623 0.83374 1.04913 1.04635 1.23958 0.99722 0.83316 0.90758 1.68328 1.10264 1.30978 1.16187 1.23213 0.88996 0.99303 0.88871 1.21517 0.98078 0.95039 1.03591 1.20232 0.88576 0.94105 0.95085 0.90131 1.22382 1.01175 1.03223 0.95738 1.60588 1.26931 1.05712 1.38224 1.19183 0.83682 0.95971 0.92578 1.21517 1.00893 0.97239 1.37780 0.91831 1.25852 0.96746 1.00283 0.96449 1.70058 1.10428 1.31020 1.45675 0.85464 0.77129 0.79344 0.78828 1.19701 1.20918 1.19103 1.21973 0.89487 0.96575 0.89678 1.20922 1.00103 0.90992 1.04455 1.68173 1.09452 1.30781 1.16470 0.88814 0.88872 0.88569 0.81095 0.90287 0.92006 0.92812 0.84408 0.98238 1.00901 0.92661 0.89117 0.88643 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.32 71.24 0.74 -0.75 16 2 C 0.29 8.29 7.64 138.75 1.06 9.35 16 3 N -0.54 -17.21 10.33 -187.83 -1.94 -19.15 16 4 C 0.16 5.18 10.60 84.71 0.90 6.08 16 5 C -0.18 -5.54 5.08 -19.69 -0.10 -5.64 16 6 C 0.13 4.33 2.13 44.17 0.09 4.42 16 7 H 0.08 2.77 6.76 -2.39 -0.02 2.75 16 8 C -0.17 -4.65 8.98 71.98 0.65 -4.00 16 9 N -0.68 -27.53 5.29 -499.45 -2.64 -30.17 16 10 C 0.21 10.84 5.24 85.55 0.45 11.29 16 11 C -0.54 -29.65 9.32 25.60 0.24 -29.41 16 12 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 13 C 0.01 0.29 5.46 84.66 0.46 0.75 16 14 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 15 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 C 0.17 4.87 6.82 42.56 0.29 5.16 16 20 C -0.11 -2.34 9.48 71.23 0.68 -1.66 16 21 N -0.53 -15.67 10.27 -176.03 -1.81 -17.48 16 22 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.17 5.34 7.03 -2.91 -0.02 5.32 16 26 H 0.08 1.81 6.98 -2.39 -0.02 1.79 16 27 H 0.06 1.64 8.13 -2.38 -0.02 1.62 16 28 H 0.05 1.66 7.45 -2.39 -0.02 1.64 16 29 H 0.34 12.75 7.97 -89.70 -0.71 12.04 16 30 H 0.00 -0.03 8.05 -2.39 -0.02 -0.05 16 31 H -0.03 -1.43 7.44 -2.39 -0.02 -1.45 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.82 5.63 -2.38 -0.01 1.80 16 Total: -1.00 -64.77 293.40 1.74 -63.02 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.37 Total: 17.23 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.45 Total: -4.41 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.10 Total: -121.49 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.77 1.74 -63.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.872 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds