Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 54.99728 * 3 2 1 5 5 C 1.50691 * 109.47283 * 174.99867 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00064 * 5 3 2 7 7 C 1.37878 * 120.00443 * 300.00247 * 5 3 2 8 8 N 1.31521 * 119.99732 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00505 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47440 * 89.99770 * 9 7 5 11 11 H 1.48499 * 109.47175 * 209.99848 * 9 7 5 12 12 H 1.48506 * 109.47058 * 329.99925 * 9 7 5 13 13 N 1.46499 * 109.47022 * 295.00144 * 3 2 1 14 14 C 1.39005 * 119.99858 * 85.00055 * 13 3 2 15 15 N 1.32674 * 120.09663 * 359.72076 * 14 13 3 16 16 C 1.32223 * 119.91208 * 179.72526 * 15 14 13 17 17 C 1.50701 * 119.94687 * 180.27954 * 16 15 14 18 18 C 1.38202 * 120.10217 * 0.55170 * 16 15 14 19 19 N 1.32241 * 120.18990 * 359.72953 * 18 16 15 20 20 C 1.31941 * 120.08880 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.05430 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.46933 * 300.00069 * 1 2 3 23 23 H 1.08994 * 109.46985 * 59.99445 * 1 2 3 24 24 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46933 * 239.99931 * 2 1 3 26 26 H 1.09002 * 109.46704 * 120.00428 * 2 1 3 27 27 H 0.96997 * 120.00122 * 180.02562 * 8 7 5 28 28 H 0.96999 * 119.99984 * 264.99579 * 13 3 2 29 29 H 1.09000 * 109.47113 * 270.27147 * 17 16 15 30 30 H 1.08995 * 109.47536 * 30.27221 * 17 16 15 31 31 H 1.09005 * 109.47027 * 150.27837 * 17 16 15 32 32 H 1.08002 * 119.90246 * 179.74295 * 18 16 15 33 33 H 1.09000 * 109.47420 * 270.02364 * 21 20 19 34 34 H 1.08995 * 109.46989 * 30.02570 * 21 20 19 35 35 H 1.09001 * 109.46761 * 150.02218 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3372 2.1734 9 14 6.0050 0.8810 1.3818 10 1 6.4418 2.1139 2.0850 11 1 6.4395 -0.3101 2.1550 12 1 6.6136 0.8413 0.0278 13 7 1.6526 2.0974 -1.2518 14 6 0.3971 2.6822 -1.3705 15 7 -0.4537 2.6434 -0.3532 16 6 -1.6450 3.2056 -0.4682 17 6 -2.6097 3.1675 0.6889 18 6 -2.0089 3.8231 -1.6499 19 7 -1.1661 3.8593 -2.6683 20 6 0.0267 3.3058 -2.5598 21 6 0.9863 3.3469 -3.7210 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0606 2.9503 28 1 2.2721 2.1231 -1.9977 29 1 -3.2236 2.2694 0.6208 30 1 -2.0530 3.1568 1.6259 31 1 -3.2504 4.0488 0.6569 32 1 -2.9843 4.2777 -1.7417 33 1 0.8363 2.4678 -4.3477 34 1 0.8069 4.2471 -4.3089 35 1 2.0099 3.3557 -3.3463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882190821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = 39.733836 kcal Electronic energy + Delta-G solvation = -16926.400495 eV Core-core repulsion = 14345.243844 eV Total energy + Delta-G solvation = -2581.156651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56636 -36.49509 -34.36973 -33.31953 -31.44066 -30.18999 -29.73738 -26.86667 -25.24616 -23.52560 -22.44504 -21.46189 -19.73748 -17.63083 -16.71254 -15.80585 -15.36760 -15.05666 -14.82444 -13.78492 -13.31825 -13.18105 -12.99732 -12.67207 -12.47015 -12.05632 -11.93985 -11.86915 -11.57966 -11.30874 -11.00783 -10.93383 -10.83678 -10.53048 -10.27240 -10.18340 -9.63694 -9.19003 -8.90013 -8.51355 -8.33074 -6.90523 -6.15926 -4.25109 1.51513 1.97010 3.22025 3.29037 3.30809 3.95632 4.30989 4.33782 4.73300 4.88015 5.09655 5.15884 5.37550 5.64333 5.66361 5.79301 5.85985 5.94165 5.99901 6.23062 6.32332 6.35163 6.40869 6.59498 6.87440 7.00582 7.13507 7.33926 7.48418 7.62932 7.75061 7.88884 8.08669 8.19150 8.44683 8.68148 8.92461 9.41340 10.89201 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.007548 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.214352 B = 3708.843198 C = 4210.656834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.275 3.725 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.380 3.620 15 N -0.489 5.489 16 C 0.127 3.873 17 C -0.098 4.098 18 C -0.053 4.053 19 N -0.406 5.406 20 C -0.017 4.017 21 C -0.086 4.086 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.020 0.980 25 H 0.029 0.971 26 H 0.099 0.901 27 H 0.264 0.736 28 H 0.400 0.600 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 3.607 -5.430 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.312 5.312 14 C 0.137 3.863 15 N -0.213 5.213 16 C -0.017 4.017 17 C -0.156 4.156 18 C -0.214 4.214 19 N -0.120 5.120 20 C -0.168 4.168 21 C -0.144 4.144 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.236 0.764 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.225 3.379 -5.044 9.438 hybrid contribution 1.168 -0.086 -0.101 1.175 sum -6.058 3.293 -5.145 8.603 Atomic orbital electron populations 1.21817 0.98525 0.97758 1.00868 1.21935 0.92543 0.99914 1.02159 1.18833 0.94024 0.89094 0.80755 0.92923 1.21234 0.90804 1.39067 1.06341 0.92199 1.24859 0.98583 0.94727 0.95365 1.69889 1.35107 1.37598 1.09282 0.86465 0.84867 0.77660 0.78221 1.20569 1.21032 1.19856 1.45620 1.10483 1.56282 1.18804 1.19297 0.88107 0.89403 0.89456 1.68162 1.02945 1.20835 1.29359 1.21939 0.92140 0.91956 0.95637 1.20634 0.96786 1.02351 0.95853 1.22779 1.00706 1.06924 0.90977 1.67842 1.01592 1.12720 1.29828 1.21401 0.95026 1.04401 0.95967 1.20421 0.96351 1.02781 0.94887 0.92690 0.94970 0.96050 0.95259 0.88253 0.92566 0.76360 0.90522 0.90374 0.90846 0.83109 0.91255 0.90939 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.44 37.16 0.31 -2.53 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.28 6.73 2.25 -69.09 -0.16 6.58 16 4 H 0.05 1.47 7.56 -51.92 -0.39 1.07 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.19 11.30 55.43 0.63 -23.56 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.69 -14.30 5.06 -54.95 -0.28 -14.58 16 14 C 0.38 7.63 6.02 -154.72 -0.93 6.70 16 15 N -0.49 -9.86 6.51 -8.48 -0.06 -9.92 16 16 C 0.13 2.14 6.78 -82.44 -0.56 1.58 16 17 C -0.10 -1.25 10.19 36.01 0.37 -0.89 16 18 C -0.05 -0.85 10.86 -17.39 -0.19 -1.03 16 19 N -0.41 -7.20 10.41 -9.12 -0.09 -7.30 16 20 C -0.02 -0.30 6.81 -82.15 -0.56 -0.86 16 21 C -0.09 -1.23 9.76 36.01 0.35 -0.88 16 22 H 0.05 1.21 7.67 -51.93 -0.40 0.81 16 23 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.40 7.53 6.53 -40.82 -0.27 7.26 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.93 6.56 -51.93 -0.34 0.59 16 LS Contribution 285.62 15.07 4.30 4.30 Total: -1.00 -28.80 285.62 -7.34 -36.14 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.92 Total: 6.56 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.90 Total: -7.07 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.20 Total: -55.36 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.80 -7.34 -36.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882190821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.877 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds