Wall clock time and date at job start Sun Mar 29 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 54.99728 * 3 2 1 5 5 C 1.50691 * 109.47283 * 174.99867 * 3 2 1 6 6 H 1.07997 * 119.99993 * 120.00064 * 5 3 2 7 7 C 1.37878 * 120.00443 * 300.00247 * 5 3 2 8 8 N 1.31521 * 119.99732 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00505 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47440 * 89.99770 * 9 7 5 11 11 H 1.48499 * 109.47175 * 209.99848 * 9 7 5 12 12 H 1.48506 * 109.47058 * 329.99925 * 9 7 5 13 13 N 1.46499 * 109.47022 * 295.00144 * 3 2 1 14 14 C 1.39005 * 119.99858 * 85.00055 * 13 3 2 15 15 N 1.32674 * 120.09663 * 359.72076 * 14 13 3 16 16 C 1.32223 * 119.91208 * 179.72526 * 15 14 13 17 17 C 1.50701 * 119.94687 * 180.27954 * 16 15 14 18 18 C 1.38202 * 120.10217 * 0.55170 * 16 15 14 19 19 N 1.32241 * 120.18990 * 359.72953 * 18 16 15 20 20 C 1.31941 * 120.08880 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.05430 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.46933 * 300.00069 * 1 2 3 23 23 H 1.08994 * 109.46985 * 59.99445 * 1 2 3 24 24 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46933 * 239.99931 * 2 1 3 26 26 H 1.09002 * 109.46704 * 120.00428 * 2 1 3 27 27 H 0.96997 * 120.00122 * 180.02562 * 8 7 5 28 28 H 0.96999 * 119.99984 * 264.99579 * 13 3 2 29 29 H 1.09000 * 109.47113 * 270.27147 * 17 16 15 30 30 H 1.08995 * 109.47536 * 30.27221 * 17 16 15 31 31 H 1.09005 * 109.47027 * 150.27837 * 17 16 15 32 32 H 1.08002 * 119.90246 * 179.74295 * 18 16 15 33 33 H 1.09000 * 109.47420 * 270.02364 * 21 20 19 34 34 H 1.08995 * 109.46989 * 30.02570 * 21 20 19 35 35 H 1.09001 * 109.46761 * 150.02218 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4441 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1434 0.8782 1.2280 8 7 3.4062 0.3372 2.1734 9 14 6.0050 0.8810 1.3818 10 1 6.4418 2.1139 2.0850 11 1 6.4395 -0.3101 2.1550 12 1 6.6136 0.8413 0.0278 13 7 1.6526 2.0974 -1.2518 14 6 0.3971 2.6822 -1.3705 15 7 -0.4537 2.6434 -0.3532 16 6 -1.6450 3.2056 -0.4682 17 6 -2.6097 3.1675 0.6889 18 6 -2.0089 3.8231 -1.6499 19 7 -1.1661 3.8593 -2.6683 20 6 0.0267 3.3058 -2.5598 21 6 0.9863 3.3469 -3.7210 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0606 2.9503 28 1 2.2721 2.1231 -1.9977 29 1 -3.2236 2.2694 0.6208 30 1 -2.0530 3.1568 1.6259 31 1 -3.2504 4.0488 0.6569 32 1 -2.9843 4.2777 -1.7417 33 1 0.8363 2.4678 -4.3477 34 1 0.8069 4.2471 -4.3089 35 1 2.0099 3.3557 -3.3463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882190821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:05 Heat of formation + Delta-G solvation = 22.309097 kcal Electronic energy + Delta-G solvation = -16927.156088 eV Core-core repulsion = 14345.243844 eV Total energy + Delta-G solvation = -2581.912244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.95318 -38.17697 -35.68761 -35.07079 -33.25834 -31.68844 -30.97032 -28.70540 -26.45015 -25.27326 -24.08999 -22.80734 -21.54685 -19.27550 -18.28667 -17.51661 -16.76122 -16.63790 -16.43008 -15.53002 -14.72913 -14.69225 -14.28224 -14.24395 -13.68489 -13.53793 -13.20036 -13.07544 -13.05291 -12.98584 -12.82600 -12.71178 -12.37575 -12.12824 -12.06288 -11.88000 -11.51232 -11.02134 -10.58047 -10.37627 -9.75101 -8.41782 -8.15820 -6.32532 0.17468 0.56448 1.42720 1.43480 1.53464 2.33488 2.57176 2.97110 3.13141 3.50111 3.55447 3.76090 4.19278 4.42386 4.45923 4.53377 4.58341 4.74284 4.76589 4.83468 4.83802 4.93827 5.08887 5.10982 5.25321 5.27556 5.46964 5.52583 5.59898 5.78750 5.86620 6.10612 6.36714 6.52263 6.77208 6.96897 7.32323 7.43826 8.88429 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.007548 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.214352 B = 3708.843198 C = 4210.656834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C 0.290 3.710 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.264 1.264 13 N -0.692 5.692 14 C 0.355 3.645 15 N -0.520 5.520 16 C 0.111 3.889 17 C -0.094 4.094 18 C -0.040 4.040 19 N -0.419 5.419 20 C -0.021 4.021 21 C -0.084 4.084 22 H 0.042 0.958 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.191 0.809 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 4.282 -6.532 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.189 1.189 13 N -0.322 5.322 14 C 0.114 3.886 15 N -0.245 5.245 16 C -0.031 4.031 17 C -0.152 4.152 18 C -0.201 4.201 19 N -0.132 5.132 20 C -0.170 4.170 21 C -0.142 4.142 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.208 0.792 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.987 4.075 -6.181 10.890 hybrid contribution 1.231 -0.214 0.242 1.273 sum -6.756 3.862 -5.939 9.789 Atomic orbital electron populations 1.21610 0.96713 0.98533 1.00297 1.21777 0.94082 0.99387 1.00625 1.18335 0.92994 0.88935 0.81129 0.97145 1.21593 0.91935 1.38926 1.06579 0.91782 1.25670 1.02918 0.94394 0.95074 1.70027 1.36808 1.38284 1.09725 0.85456 0.79627 0.77478 0.78443 1.20463 1.20795 1.18865 1.45227 1.11504 1.57654 1.17835 1.19516 0.87909 0.90600 0.90552 1.68135 1.04357 1.21817 1.30213 1.22625 0.91672 0.91452 0.97396 1.20745 0.96241 1.04722 0.93455 1.23463 1.01664 1.05001 0.89998 1.67979 1.01708 1.13102 1.30444 1.21813 0.95681 1.03427 0.96110 1.20494 0.95685 1.04036 0.93962 0.93865 0.94814 0.94437 0.95296 0.91004 0.92608 0.75488 0.89127 0.91890 0.87275 0.79198 0.89931 0.89578 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.94 8.44 71.98 0.61 -4.33 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.29 14.61 2.25 44.24 0.10 14.71 16 4 H 0.01 0.62 7.56 -2.38 -0.02 0.60 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -51.21 11.30 21.45 0.24 -50.97 16 9 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 13 N -0.69 -29.31 5.06 -327.77 -1.66 -30.97 16 14 C 0.36 14.24 6.02 133.02 0.80 15.04 16 15 N -0.52 -21.04 6.51 -180.74 -1.18 -22.22 16 16 C 0.11 3.59 6.78 42.49 0.29 3.87 16 17 C -0.09 -2.20 10.19 71.24 0.73 -1.47 16 18 C -0.04 -1.17 10.86 84.62 0.92 -0.25 16 19 N -0.42 -13.92 10.41 -182.77 -1.90 -15.83 16 20 C -0.02 -0.72 6.81 42.80 0.29 -0.43 16 21 C -0.08 -2.25 9.76 71.24 0.69 -1.56 16 22 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 23 H 0.03 1.43 5.59 -2.39 -0.01 1.42 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.41 15.43 6.53 -92.71 -0.61 14.83 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.74 8.08 -2.38 -0.02 1.72 16 32 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.89 6.56 -2.39 -0.02 1.87 16 Total: -1.00 -62.79 285.62 3.28 -59.52 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.48 Total: 23.96 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.27 Total: -7.65 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.50 Total: -119.99 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.79 3.28 -59.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882190821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.825 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds