Wall clock time and date at job start Sun Mar 29 2020 22:05:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.46894 * 2 1
4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1
5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1
6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2
7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2
8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3
9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3
10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5
11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5
12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5
13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1
14 14 C 1.39004 * 119.99958 * 274.99922 * 13 3 2
15 15 N 1.32680 * 120.09442 * 359.97438 * 14 13 3
16 16 C 1.32220 * 119.91051 * 179.97438 * 15 14 13
17 17 C 1.50698 * 119.94336 * 179.97438 * 16 15 14
18 18 C 1.38207 * 120.10505 * 0.02562 * 16 15 14
19 19 N 1.32246 * 120.18759 * 0.02562 * 18 16 15
20 20 C 1.31949 * 120.08705 * 359.73234 * 19 18 16
21 21 C 1.50698 * 120.05178 * 180.27681 * 20 19 18
22 22 H 1.08998 * 109.47886 * 300.00484 * 1 2 3
23 23 H 1.09001 * 109.46995 * 60.00249 * 1 2 3
24 24 H 1.08996 * 109.47194 * 179.97438 * 1 2 3
25 25 H 1.08994 * 109.47388 * 240.00046 * 2 1 3
26 26 H 1.09001 * 109.46995 * 119.99751 * 2 1 3
27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5
28 28 H 0.96998 * 120.00005 * 95.00592 * 13 3 2
29 29 H 1.09000 * 109.46814 * 90.00323 * 17 16 15
30 30 H 1.09004 * 109.46588 * 210.00032 * 17 16 15
31 31 H 1.08991 * 109.47249 * 330.00145 * 17 16 15
32 32 H 1.08002 * 119.90407 * 179.97438 * 18 16 15
33 33 H 1.09000 * 109.47004 * 270.24204 * 21 20 19
34 34 H 1.09005 * 109.47488 * 30.24177 * 21 20 19
35 35 H 1.08999 * 109.47433 * 150.23923 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9815 -0.8419
5 6 3.5419 1.4444 -0.1238
6 1 4.1471 1.8890 0.6524
7 6 4.1432 0.8785 -1.2279
8 7 5.4539 0.8797 -1.3357
9 14 3.0964 0.1100 -2.5706
10 1 2.8745 -1.3260 -2.2645
11 1 1.7881 0.8093 -2.6394
12 1 3.7942 0.2359 -3.8754
13 7 1.6522 2.0975 1.2518
14 6 0.3967 2.6822 1.3704
15 7 -0.4519 2.6485 0.3510
16 6 -1.6454 3.2054 0.4681
17 6 -2.6095 3.1681 -0.6895
18 6 -2.0096 3.8224 1.6499
19 7 -1.1665 3.8592 2.6682
20 6 0.0246 3.3017 2.5612
21 6 0.9823 3.3386 3.7242
22 1 -0.3635 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8933 -0.5138 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 5.8771 0.4812 -2.1123
28 1 2.2717 2.1233 1.9977
29 1 -3.2231 2.2697 -0.6225
30 1 -3.2506 4.0492 -0.6568
31 1 -2.0525 3.1586 -1.6262
32 1 -2.9851 4.2766 1.7418
33 1 1.5950 4.2379 3.6619
34 1 0.4199 3.3460 4.6579
35 1 1.6246 2.4585 3.6940
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000882190822.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:05:08
Heat of formation + Delta-G solvation = 47.911244 kcal
Electronic energy + Delta-G solvation = -17022.171229 eV
Core-core repulsion = 14441.369178 eV
Total energy + Delta-G solvation = -2580.802052 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.71992 -36.79724 -34.50554 -33.36635 -31.90026 -30.40335 -29.88977 -27.36189
-25.36860 -23.47186 -22.49613 -21.60785 -20.14861 -17.77099 -17.02938 -15.94256
-15.49809 -15.40446 -14.96562 -13.83949 -13.58365 -13.28102 -13.23338 -12.85611
-12.58222 -12.22360 -12.17845 -12.00638 -11.84588 -11.82799 -11.20390 -11.12707
-10.90698 -10.61266 -10.58932 -9.93955 -9.53470 -9.34751 -9.14261 -8.68594
-8.52252 -7.08820 -6.24002 -4.26630 1.37921 1.82323 3.20142 3.32025
3.35826 3.78994 4.18792 4.28104 4.60890 4.71342 4.96337 5.09541
5.24247 5.52562 5.56090 5.67755 5.78695 5.81759 5.88799 5.92733
5.98940 6.12642 6.12890 6.22952 6.59676 6.66734 6.68849 6.87306
6.89548 7.20917 7.43090 7.69422 7.74330 8.17175 8.40725 8.59644
8.78089 9.36140 10.88146
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.028677 B = 0.008663 C = 0.007330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.142328 B = 3231.408016 C = 3819.031809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.138 4.138
3 C 0.248 3.752
4 H 0.052 0.948
5 C -0.537 4.537
6 H 0.079 0.921
7 C 0.079 3.921
8 N -0.892 5.892
9 Si 0.884 3.116
10 H -0.276 1.276
11 H -0.259 1.259
12 H -0.295 1.295
13 N -0.678 5.678
14 C 0.379 3.621
15 N -0.495 5.495
16 C 0.125 3.875
17 C -0.099 4.099
18 C -0.047 4.047
19 N -0.405 5.405
20 C -0.009 4.009
21 C -0.088 4.088
22 H 0.045 0.955
23 H 0.056 0.944
24 H 0.029 0.971
25 H 0.054 0.946
26 H 0.056 0.944
27 H 0.267 0.733
28 H 0.406 0.594
29 H 0.077 0.923
30 H 0.074 0.926
31 H 0.076 0.924
32 H 0.153 0.847
33 H 0.072 0.928
34 H 0.073 0.927
35 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.859 2.631 4.196 13.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.177 4.177
3 C 0.144 3.856
4 H 0.070 0.930
5 C -0.575 4.575
6 H 0.097 0.903
7 C -0.125 4.125
8 N -0.528 5.528
9 Si 0.714 3.286
10 H -0.203 1.203
11 H -0.184 1.184
12 H -0.222 1.222
13 N -0.306 5.306
14 C 0.136 3.864
15 N -0.220 5.220
16 C -0.017 4.017
17 C -0.157 4.157
18 C -0.208 4.208
19 N -0.119 5.119
20 C -0.160 4.160
21 C -0.146 4.146
22 H 0.064 0.936
23 H 0.075 0.925
24 H 0.048 0.952
25 H 0.072 0.928
26 H 0.075 0.925
27 H 0.077 0.923
28 H 0.244 0.756
29 H 0.095 0.905
30 H 0.093 0.907
31 H 0.095 0.905
32 H 0.171 0.829
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -12.588 2.477 3.890 13.406
hybrid contribution -0.160 -0.547 -0.533 0.781
sum -12.748 1.929 3.357 13.323
Atomic orbital electron populations
1.21847 0.97137 0.98754 1.01873 1.22292 0.94279 1.00124 1.00995
1.19182 0.95432 0.88359 0.82595 0.93016 1.21059 0.88696 1.39844
1.07889 0.90277 1.24829 0.94872 0.95121 0.97675 1.69871 1.08703
1.44428 1.29836 0.86883 0.80966 0.79906 0.80856 1.20306 1.18357
1.22200 1.45226 1.10763 1.56505 1.18122 1.19275 0.87980 0.89507
0.89607 1.68109 1.03122 1.21313 1.29420 1.21927 0.91932 0.92181
0.95695 1.20642 0.96800 1.02512 0.95717 1.22825 1.00669 1.06428
0.90902 1.67886 1.01614 1.12434 1.29921 1.21430 0.94995 1.03785
0.95820 1.20453 0.96772 1.02369 0.95047 0.93626 0.92463 0.95151
0.92758 0.92502 0.92267 0.75606 0.90472 0.90679 0.90460 0.82930
0.90914 0.90803 0.91204
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.68 8.45 37.16 0.31 -2.36 16
2 C -0.14 -3.01 5.11 -26.73 -0.14 -3.14 16
3 C 0.25 5.74 1.84 -69.08 -0.13 5.62 16
4 H 0.05 1.30 6.61 -51.93 -0.34 0.96 16
5 C -0.54 -14.38 9.31 -34.44 -0.32 -14.70 16
6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16
7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16
8 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16
9 Si 0.88 21.40 24.41 -169.99 -4.15 17.25 16
10 H -0.28 -6.51 6.83 56.52 0.39 -6.12 16
11 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16
12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
13 N -0.68 -13.54 5.06 -54.95 -0.28 -13.82 16
14 C 0.38 7.17 6.01 -154.72 -0.93 6.24 16
15 N -0.50 -9.34 6.54 -8.48 -0.06 -9.40 16
16 C 0.13 1.97 6.78 -82.44 -0.56 1.41 16
17 C -0.10 -1.14 10.19 36.00 0.37 -0.78 16
18 C -0.05 -0.71 10.86 -17.38 -0.19 -0.90 16
19 N -0.41 -6.80 10.41 -9.12 -0.09 -6.89 16
20 C -0.01 -0.16 6.81 -82.15 -0.56 -0.72 16
21 C -0.09 -1.20 9.75 36.00 0.35 -0.85 16
22 H 0.04 0.88 5.59 -51.93 -0.29 0.59 16
23 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16
24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16
26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
28 H 0.41 7.42 6.54 -40.82 -0.27 7.16 16
29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16
31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16
32 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16
33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16
LS Contribution 278.88 15.07 4.20 4.20
Total: -1.00 -30.25 278.88 -6.28 -36.52
By element:
Atomic # 1 Polarization: 10.52 SS G_CDS: -4.79 Total: 5.73 kcal
Atomic # 6 Polarization: -6.21 SS G_CDS: -1.89 Total: -8.09 kcal
Atomic # 7 Polarization: -55.95 SS G_CDS: 0.35 Total: -55.61 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.15 Total: 17.25 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -30.25 -6.28 -36.52 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882190822.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.435 kcal
(2) G-P(sol) polarization free energy of solvation -30.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds