Wall clock time and date at job start Sun Mar 29 2020 22:05:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52997 * 109.46894 * 2 1
4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1
5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1
6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2
7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2
8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3
9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3
10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5
11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5
12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5
13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1
14 14 C 1.39004 * 119.99958 * 274.99922 * 13 3 2
15 15 N 1.32680 * 120.09442 * 359.97438 * 14 13 3
16 16 C 1.32220 * 119.91051 * 179.97438 * 15 14 13
17 17 C 1.50698 * 119.94336 * 179.97438 * 16 15 14
18 18 C 1.38207 * 120.10505 * 0.02562 * 16 15 14
19 19 N 1.32246 * 120.18759 * 0.02562 * 18 16 15
20 20 C 1.31949 * 120.08705 * 359.73234 * 19 18 16
21 21 C 1.50698 * 120.05178 * 180.27681 * 20 19 18
22 22 H 1.08998 * 109.47886 * 300.00484 * 1 2 3
23 23 H 1.09001 * 109.46995 * 60.00249 * 1 2 3
24 24 H 1.08996 * 109.47194 * 179.97438 * 1 2 3
25 25 H 1.08994 * 109.47388 * 240.00046 * 2 1 3
26 26 H 1.09001 * 109.46995 * 119.99751 * 2 1 3
27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5
28 28 H 0.96998 * 120.00005 * 95.00592 * 13 3 2
29 29 H 1.09000 * 109.46814 * 90.00323 * 17 16 15
30 30 H 1.09004 * 109.46588 * 210.00032 * 17 16 15
31 31 H 1.08991 * 109.47249 * 330.00145 * 17 16 15
32 32 H 1.08002 * 119.90407 * 179.97438 * 18 16 15
33 33 H 1.09000 * 109.47004 * 270.24204 * 21 20 19
34 34 H 1.09005 * 109.47488 * 30.24177 * 21 20 19
35 35 H 1.08999 * 109.47433 * 150.23923 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9815 -0.8419
5 6 3.5419 1.4444 -0.1238
6 1 4.1471 1.8890 0.6524
7 6 4.1432 0.8785 -1.2279
8 7 5.4539 0.8797 -1.3357
9 14 3.0964 0.1100 -2.5706
10 1 2.8745 -1.3260 -2.2645
11 1 1.7881 0.8093 -2.6394
12 1 3.7942 0.2359 -3.8754
13 7 1.6522 2.0975 1.2518
14 6 0.3967 2.6822 1.3704
15 7 -0.4519 2.6485 0.3510
16 6 -1.6454 3.2054 0.4681
17 6 -2.6095 3.1681 -0.6895
18 6 -2.0096 3.8224 1.6499
19 7 -1.1665 3.8592 2.6682
20 6 0.0246 3.3017 2.5612
21 6 0.9823 3.3386 3.7242
22 1 -0.3635 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8933 -0.5138 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 5.8771 0.4812 -2.1123
28 1 2.2717 2.1233 1.9977
29 1 -3.2231 2.2697 -0.6225
30 1 -3.2506 4.0492 -0.6568
31 1 -2.0525 3.1586 -1.6262
32 1 -2.9851 4.2766 1.7418
33 1 1.5950 4.2379 3.6619
34 1 0.4199 3.3460 4.6579
35 1 1.6246 2.4585 3.6940
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000882190822.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:05:08
Heat of formation + Delta-G solvation = 27.653859 kcal
Electronic energy + Delta-G solvation = -17023.049655 eV
Core-core repulsion = 14441.369178 eV
Total energy + Delta-G solvation = -2581.680478 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-42.01579 -38.40086 -35.72805 -35.07497 -33.76343 -31.78638 -31.00750 -29.16277
-26.47585 -25.06844 -24.14953 -22.86224 -21.83083 -19.47021 -18.52093 -17.60655
-17.11881 -16.66499 -16.41874 -15.59879 -15.19686 -14.63359 -14.44843 -14.27856
-13.93969 -13.67413 -13.57137 -13.15405 -13.10381 -13.03133 -12.91053 -12.76368
-12.49212 -12.23518 -12.08934 -11.72963 -11.32903 -11.18919 -10.89328 -10.49126
-9.81755 -8.49946 -8.38343 -6.44409 0.13459 0.51136 1.27682 1.34850
1.45325 2.25883 2.37020 2.91697 2.98621 3.44606 3.49353 3.70384
4.14802 4.26320 4.33155 4.36315 4.43507 4.51028 4.72671 4.78852
4.83496 4.87252 4.93334 5.03530 5.07959 5.12521 5.23663 5.25452
5.45426 5.51271 5.60124 5.96095 6.29446 6.48939 6.58357 6.89696
7.17391 7.31882 8.77064
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.028677 B = 0.008663 C = 0.007330
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 976.142328 B = 3231.408016 C = 3819.031809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.137 4.137
3 C 0.263 3.737
4 H 0.032 0.968
5 C -0.537 4.537
6 H 0.049 0.951
7 C 0.026 3.974
8 N -0.937 5.937
9 Si 0.942 3.058
10 H -0.263 1.263
11 H -0.250 1.250
12 H -0.295 1.295
13 N -0.689 5.689
14 C 0.357 3.643
15 N -0.521 5.521
16 C 0.114 3.886
17 C -0.095 4.095
18 C -0.035 4.035
19 N -0.418 5.418
20 C -0.017 4.017
21 C -0.086 4.086
22 H 0.043 0.957
23 H 0.052 0.948
24 H 0.051 0.949
25 H 0.044 0.956
26 H 0.056 0.944
27 H 0.269 0.731
28 H 0.410 0.590
29 H 0.093 0.907
30 H 0.108 0.892
31 H 0.065 0.935
32 H 0.192 0.808
33 H 0.078 0.922
34 H 0.087 0.913
35 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.797 2.665 4.222 16.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.175 4.175
3 C 0.157 3.843
4 H 0.050 0.950
5 C -0.576 4.576
6 H 0.067 0.933
7 C -0.173 4.173
8 N -0.576 5.576
9 Si 0.769 3.231
10 H -0.189 1.189
11 H -0.174 1.174
12 H -0.223 1.223
13 N -0.319 5.319
14 C 0.117 3.883
15 N -0.245 5.245
16 C -0.028 4.028
17 C -0.153 4.153
18 C -0.197 4.197
19 N -0.132 5.132
20 C -0.166 4.166
21 C -0.144 4.144
22 H 0.062 0.938
23 H 0.071 0.929
24 H 0.070 0.930
25 H 0.062 0.938
26 H 0.075 0.925
27 H 0.079 0.921
28 H 0.248 0.752
29 H 0.111 0.889
30 H 0.126 0.874
31 H 0.084 0.916
32 H 0.209 0.791
33 H 0.097 0.903
34 H 0.106 0.894
35 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -15.556 2.527 3.951 16.248
hybrid contribution 0.648 -0.427 -0.469 0.907
sum -14.908 2.100 3.482 15.453
Atomic orbital electron populations
1.21696 0.94917 1.00032 1.01570 1.22205 0.96202 0.98691 1.00444
1.18742 0.92550 0.89405 0.83584 0.94996 1.21350 0.90824 1.38541
1.06839 0.93326 1.25613 0.95820 0.95840 1.00033 1.69998 1.10489
1.46211 1.30904 0.85949 0.79583 0.79741 0.77867 1.18882 1.17438
1.22256 1.44899 1.11874 1.57977 1.17172 1.19414 0.87671 0.90584
0.90671 1.68088 1.04386 1.22123 1.29936 1.22627 0.91455 0.91404
0.97351 1.20767 0.96238 1.04865 0.93386 1.23520 1.01571 1.04583
0.89999 1.68005 1.01718 1.12800 1.30700 1.21765 0.95635 1.03197
0.95996 1.20509 0.96507 1.02862 0.94556 0.93787 0.92866 0.92973
0.93798 0.92471 0.92141 0.75186 0.88861 0.87391 0.91562 0.79113
0.90298 0.89393 0.90815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.57 8.45 71.98 0.61 -3.96 16
2 C -0.14 -5.82 5.11 30.59 0.16 -5.67 16
3 C 0.26 12.21 1.84 44.25 0.08 12.29 16
4 H 0.03 1.62 6.61 -2.39 -0.02 1.60 16
5 C -0.54 -29.60 9.31 25.60 0.24 -29.36 16
6 H 0.05 2.90 7.98 -2.91 -0.02 2.87 16
7 C 0.03 1.49 5.45 84.66 0.46 1.95 16
8 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16
9 Si 0.94 44.30 24.41 68.60 1.67 45.98 16
10 H -0.26 -11.72 6.83 99.48 0.68 -11.04 16
11 H -0.25 -11.32 6.53 99.48 0.65 -10.67 16
12 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16
13 N -0.69 -27.70 5.06 -327.75 -1.66 -29.35 16
14 C 0.36 13.26 6.01 133.02 0.80 14.06 16
15 N -0.52 -18.93 6.54 -180.74 -1.18 -20.11 16
16 C 0.11 3.27 6.78 42.49 0.29 3.56 16
17 C -0.09 -1.86 10.19 71.24 0.73 -1.14 16
18 C -0.04 -0.94 10.86 84.62 0.92 -0.02 16
19 N -0.42 -13.04 10.41 -182.77 -1.90 -14.95 16
20 C -0.02 -0.55 6.81 42.79 0.29 -0.26 16
21 C -0.09 -2.26 9.75 71.24 0.69 -1.57 16
22 H 0.04 1.62 5.59 -2.39 -0.01 1.60 16
23 H 0.05 1.98 7.68 -2.39 -0.02 1.96 16
24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
25 H 0.04 1.95 3.22 -2.39 -0.01 1.94 16
26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16
28 H 0.41 15.34 6.54 -92.71 -0.61 14.74 16
29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16
31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16
33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16
35 H 0.07 1.85 6.56 -2.39 -0.02 1.83 16
Total: -1.00 -65.83 278.88 2.90 -62.92
By element:
Atomic # 1 Polarization: 21.68 SS G_CDS: 0.41 Total: 22.08 kcal
Atomic # 6 Polarization: -15.38 SS G_CDS: 5.26 Total: -10.11 kcal
Atomic # 7 Polarization: -116.43 SS G_CDS: -4.44 Total: -120.87 kcal
Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.98 kcal
Total: -65.83 2.90 -62.92 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000882190822.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.579 kcal
(2) G-P(sol) polarization free energy of solvation -65.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.925 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds