Wall clock time and date at job start Sun Mar 29 2020 22:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46893 * 2 1 4 4 C 1.36937 * 120.00478 * 270.01986 * 3 2 1 5 5 H 1.07996 * 119.99917 * 320.92435 * 4 3 2 6 6 C 1.38814 * 119.99954 * 140.91584 * 4 3 2 7 7 N 1.31619 * 119.99656 * 159.12180 * 6 4 3 8 8 Si 1.86798 * 120.00202 * 339.11937 * 6 4 3 9 9 H 1.48502 * 109.46900 * 95.62095 * 8 6 4 10 10 H 1.48497 * 109.47080 * 215.62188 * 8 6 4 11 11 H 1.48501 * 109.47161 * 335.62565 * 8 6 4 12 12 C 1.46502 * 120.00042 * 90.02520 * 3 2 1 13 13 C 1.50701 * 109.47288 * 89.99517 * 12 3 2 14 14 N 1.30494 * 125.65241 * 270.04392 * 13 12 3 15 15 C 1.34122 * 109.25863 * 179.97438 * 14 13 12 16 16 C 1.34665 * 108.01977 * 359.73395 * 15 14 13 17 17 N 1.35046 * 125.64737 * 90.00176 * 13 12 3 18 18 C 1.46498 * 126.39707 * 0.04178 * 17 13 12 19 19 C 1.52996 * 117.49543 * 171.37766 * 18 17 13 20 20 C 1.52999 * 60.00380 * 107.48616 * 19 18 17 21 21 H 1.09002 * 109.47122 * 59.99492 * 1 2 3 22 22 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46353 * 299.99523 * 1 2 3 24 24 H 1.09000 * 109.47043 * 240.00757 * 2 1 3 25 25 H 1.08993 * 109.47075 * 120.00227 * 2 1 3 26 26 H 0.97003 * 119.99784 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46847 * 329.99538 * 12 3 2 28 28 H 1.08996 * 109.47624 * 210.00250 * 12 3 2 29 29 H 1.08007 * 125.99001 * 180.02562 * 15 14 13 30 30 H 1.08004 * 126.59462 * 180.28495 * 16 15 14 31 31 H 1.08996 * 115.56539 * 25.68422 * 18 17 13 32 32 H 1.09005 * 117.49771 * 214.97408 * 19 18 17 33 33 H 1.09003 * 117.50191 * 359.97438 * 19 18 17 34 34 H 1.09000 * 117.49965 * 252.51170 * 20 19 18 35 35 H 1.08998 * 117.50398 * 107.48598 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2462 2.0270 -1.1859 5 1 2.6822 1.4924 -2.0168 6 6 1.9166 3.3687 -1.3200 7 7 2.4822 4.0944 -2.2612 8 14 0.6703 4.1444 -0.1648 9 1 1.3815 4.8101 0.9560 10 1 -0.1342 5.1483 -0.9065 11 1 -0.2272 3.0913 0.3744 12 6 2.2630 2.0717 1.2687 13 6 3.6865 1.8348 1.7032 14 7 4.0991 0.8489 2.4521 15 6 5.4237 0.9556 2.6335 16 6 5.8490 2.0459 1.9672 17 7 4.7465 2.6072 1.3815 18 6 4.7218 3.8166 0.5552 19 6 6.0032 4.6495 0.4837 20 6 5.5640 3.8167 -0.7222 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.2522 5.0321 -2.3547 27 1 1.5824 1.6874 2.0286 28 1 2.0959 3.1409 1.1387 29 1 6.0417 0.2823 3.2090 30 1 6.8644 2.4089 1.9080 31 1 3.7722 4.3511 0.5319 32 1 5.8966 5.7321 0.4135 33 1 6.8645 4.2978 1.0519 34 1 6.1363 2.9169 -0.9478 35 1 5.1684 4.3512 -1.5859 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891778486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:51 Heat of formation + Delta-G solvation = 116.278429 kcal Electronic energy + Delta-G solvation = -17496.058355 eV Core-core repulsion = 14918.220927 eV Total energy + Delta-G solvation = -2577.837428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41972 -36.66488 -36.19693 -31.97349 -31.16399 -30.63724 -28.59087 -25.68272 -23.77284 -22.78203 -22.02104 -20.48903 -20.19131 -18.89607 -17.29879 -16.44398 -15.37437 -14.88627 -14.58409 -13.87186 -13.78422 -13.53679 -13.13707 -13.08598 -12.35897 -12.22007 -12.01312 -11.77209 -11.31887 -11.13459 -10.87857 -10.66794 -10.59031 -10.21169 -10.14756 -9.95653 -9.69273 -9.27081 -8.64125 -8.61094 -7.71398 -6.94012 -6.10357 -3.51975 2.66399 3.15097 3.36074 3.38686 3.43998 3.78250 4.22836 4.39356 5.01567 5.07708 5.21097 5.27758 5.30064 5.35510 5.45199 5.79234 5.90785 6.00310 6.02683 6.14466 6.27184 6.34051 6.39537 6.41667 6.46404 6.62647 6.67341 6.85833 7.06557 7.11854 7.40640 7.90110 7.97253 8.31665 8.82444 8.88361 9.59784 10.03841 11.04265 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.014029 C = 0.009752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.384135 B = 1995.374101 C = 2870.455116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 N -0.592 5.592 4 C -0.258 4.258 5 H 0.078 0.922 6 C 0.043 3.957 7 N -0.893 5.893 8 Si 0.857 3.143 9 H -0.288 1.288 10 H -0.298 1.298 11 H -0.261 1.261 12 C 0.212 3.788 13 C 0.224 3.776 14 N -0.506 5.506 15 C -0.038 4.038 16 C -0.079 4.079 17 N -0.412 5.412 18 C 0.077 3.923 19 C -0.196 4.196 20 C -0.142 4.142 21 H 0.055 0.945 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.262 0.738 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -0.173 5.782 7.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 N -0.314 5.314 4 C -0.386 4.386 5 H 0.096 0.904 6 C -0.158 4.158 7 N -0.534 5.534 8 Si 0.686 3.314 9 H -0.217 1.217 10 H -0.226 1.226 11 H -0.186 1.186 12 C 0.084 3.916 13 C -0.042 4.042 14 N -0.226 5.226 15 C -0.186 4.186 16 C -0.213 4.213 17 N -0.092 5.092 18 C -0.027 4.027 19 C -0.233 4.233 20 C -0.180 4.180 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.178 0.822 31 H 0.154 0.846 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.751 -0.528 5.899 7.010 hybrid contribution 0.023 1.233 0.227 1.254 sum 3.774 0.705 6.126 7.229 Atomic orbital electron populations 1.22298 0.99400 0.99332 1.01548 1.20892 0.91681 0.85794 0.99637 1.44144 1.74269 1.11847 1.01147 1.18795 1.35536 0.93807 0.90507 0.90428 1.25404 0.97428 0.96777 0.96178 1.69843 1.41778 1.07095 1.34651 0.87277 0.84493 0.79234 0.80352 1.21661 1.22599 1.18560 1.19742 0.85391 0.97383 0.89094 1.24928 0.93542 0.89046 0.96666 1.70231 1.11173 1.22237 1.18918 1.22071 0.92399 0.98873 1.05291 1.22386 0.92786 1.00316 1.05799 1.44801 1.07500 1.20354 1.36550 1.21781 0.97326 0.87069 0.96566 1.23431 0.97278 0.98798 1.03837 1.23239 1.00706 1.01323 0.92750 0.92630 0.94115 0.93949 0.93200 0.93440 0.92817 0.91074 0.91867 0.82340 0.82211 0.84622 0.87935 0.88801 0.89016 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 37.16 0.38 -2.73 16 2 C 0.15 3.02 6.39 -4.04 -0.03 2.99 16 3 N -0.59 -13.90 2.04 -174.61 -0.36 -14.26 16 4 C -0.26 -6.73 9.91 -15.06 -0.15 -6.88 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 6 C 0.04 1.11 4.88 -17.43 -0.09 1.02 16 7 N -0.89 -23.94 13.97 55.49 0.78 -23.17 16 8 Si 0.86 20.49 24.48 -169.99 -4.16 16.33 16 9 H -0.29 -6.66 6.70 56.52 0.38 -6.28 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 12 C 0.21 4.77 4.79 -5.19 -0.02 4.74 16 13 C 0.22 4.94 7.49 -155.42 -1.16 3.77 16 14 N -0.51 -10.94 11.25 -10.82 -0.12 -11.06 16 15 C -0.04 -0.70 11.87 -17.82 -0.21 -0.91 16 16 C -0.08 -1.41 10.86 -16.56 -0.18 -1.59 16 17 N -0.41 -8.38 3.08 -106.83 -0.33 -8.71 16 18 C 0.08 1.49 6.57 -67.93 -0.45 1.04 16 19 C -0.20 -2.97 9.99 -26.73 -0.27 -3.24 16 20 C -0.14 -2.60 10.40 -26.73 -0.28 -2.88 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 25 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.07 1.50 8.07 -51.92 -0.42 1.08 16 28 H 0.06 1.47 2.47 -51.93 -0.13 1.35 16 29 H 0.16 2.39 8.06 -52.48 -0.42 1.97 16 30 H 0.16 2.29 7.13 -52.48 -0.37 1.92 16 31 H 0.14 2.92 6.35 -51.93 -0.33 2.59 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.26 6.90 -51.93 -0.36 0.90 16 34 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.12 2.41 8.14 -51.93 -0.42 1.99 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -28.21 289.44 -7.27 -35.48 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.99 Total: 5.67 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.45 Total: -4.65 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.03 Total: -57.19 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.16 Total: 16.33 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.21 -7.27 -35.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.758 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds