Wall clock time and date at job start Sun Mar 29 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46893 * 2 1 4 4 C 1.36937 * 120.00478 * 270.01986 * 3 2 1 5 5 H 1.07996 * 119.99917 * 320.92435 * 4 3 2 6 6 C 1.38814 * 119.99954 * 140.91584 * 4 3 2 7 7 N 1.31619 * 119.99656 * 159.12180 * 6 4 3 8 8 Si 1.86798 * 120.00202 * 339.11937 * 6 4 3 9 9 H 1.48502 * 109.46900 * 95.62095 * 8 6 4 10 10 H 1.48497 * 109.47080 * 215.62188 * 8 6 4 11 11 H 1.48501 * 109.47161 * 335.62565 * 8 6 4 12 12 C 1.46502 * 120.00042 * 90.02520 * 3 2 1 13 13 C 1.50701 * 109.47288 * 89.99517 * 12 3 2 14 14 N 1.30494 * 125.65241 * 270.04392 * 13 12 3 15 15 C 1.34122 * 109.25863 * 179.97438 * 14 13 12 16 16 C 1.34665 * 108.01977 * 359.73395 * 15 14 13 17 17 N 1.35046 * 125.64737 * 90.00176 * 13 12 3 18 18 C 1.46498 * 126.39707 * 0.04178 * 17 13 12 19 19 C 1.52996 * 117.49543 * 171.37766 * 18 17 13 20 20 C 1.52999 * 60.00380 * 107.48616 * 19 18 17 21 21 H 1.09002 * 109.47122 * 59.99492 * 1 2 3 22 22 H 1.08999 * 109.46942 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46353 * 299.99523 * 1 2 3 24 24 H 1.09000 * 109.47043 * 240.00757 * 2 1 3 25 25 H 1.08993 * 109.47075 * 120.00227 * 2 1 3 26 26 H 0.97003 * 119.99784 * 180.02562 * 7 6 4 27 27 H 1.09007 * 109.46847 * 329.99538 * 12 3 2 28 28 H 1.08996 * 109.47624 * 210.00250 * 12 3 2 29 29 H 1.08007 * 125.99001 * 180.02562 * 15 14 13 30 30 H 1.08004 * 126.59462 * 180.28495 * 16 15 14 31 31 H 1.08996 * 115.56539 * 25.68422 * 18 17 13 32 32 H 1.09005 * 117.49771 * 214.97408 * 19 18 17 33 33 H 1.09003 * 117.50191 * 359.97438 * 19 18 17 34 34 H 1.09000 * 117.49965 * 252.51170 * 20 19 18 35 35 H 1.08998 * 117.50398 * 107.48598 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2462 2.0270 -1.1859 5 1 2.6822 1.4924 -2.0168 6 6 1.9166 3.3687 -1.3200 7 7 2.4822 4.0944 -2.2612 8 14 0.6703 4.1444 -0.1648 9 1 1.3815 4.8101 0.9560 10 1 -0.1342 5.1483 -0.9065 11 1 -0.2272 3.0913 0.3744 12 6 2.2630 2.0717 1.2687 13 6 3.6865 1.8348 1.7032 14 7 4.0991 0.8489 2.4521 15 6 5.4237 0.9556 2.6335 16 6 5.8490 2.0459 1.9672 17 7 4.7465 2.6072 1.3815 18 6 4.7218 3.8166 0.5552 19 6 6.0032 4.6495 0.4837 20 6 5.5640 3.8167 -0.7222 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.2522 5.0321 -2.3547 27 1 1.5824 1.6874 2.0286 28 1 2.0959 3.1409 1.1387 29 1 6.0417 0.2823 3.2090 30 1 6.8644 2.4089 1.9080 31 1 3.7722 4.3511 0.5319 32 1 5.8966 5.7321 0.4135 33 1 6.8645 4.2978 1.0519 34 1 6.1363 2.9169 -0.9478 35 1 5.1684 4.3512 -1.5859 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891778486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:50 Heat of formation + Delta-G solvation = 100.771027 kcal Electronic energy + Delta-G solvation = -17496.730807 eV Core-core repulsion = 14918.220927 eV Total energy + Delta-G solvation = -2578.509879 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.92850 -38.08451 -37.99476 -33.94656 -32.67830 -32.24508 -30.25948 -27.41120 -25.56750 -24.24280 -23.38276 -22.19190 -21.71395 -20.51306 -19.00624 -18.14881 -17.18685 -16.54048 -16.10540 -15.45024 -15.34953 -15.26046 -14.86235 -14.58473 -14.10620 -13.86441 -13.56446 -13.38653 -13.04624 -12.66318 -12.48095 -12.34672 -12.15982 -12.01654 -11.66912 -11.63557 -11.59803 -10.80665 -10.62384 -10.12151 -9.20333 -8.82149 -8.14677 -5.55341 1.15738 1.24572 1.40943 1.49844 1.91404 2.25097 2.40074 2.83568 3.13462 3.42423 3.66968 3.72794 3.87263 3.94434 3.98595 4.31835 4.40860 4.49172 4.60437 4.66585 4.78727 4.79076 4.82286 4.92082 4.99839 5.06512 5.21920 5.23507 5.52427 5.58343 5.95563 6.00524 6.21843 6.38044 6.95581 7.29978 7.60810 8.07817 9.02534 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.014029 C = 0.009752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.384135 B = 1995.374101 C = 2870.455116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 N -0.602 5.602 4 C -0.253 4.253 5 H 0.036 0.964 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.903 3.097 9 H -0.277 1.277 10 H -0.306 1.306 11 H -0.258 1.258 12 C 0.215 3.785 13 C 0.190 3.810 14 N -0.524 5.524 15 C -0.052 4.052 16 C -0.068 4.068 17 N -0.416 5.416 18 C 0.048 3.952 19 C -0.146 4.146 20 C -0.152 4.152 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.192 0.808 30 H 0.200 0.800 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 -0.014 7.505 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 N -0.324 5.324 4 C -0.383 4.383 5 H 0.054 0.946 6 C -0.180 4.180 7 N -0.560 5.560 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.234 1.234 11 H -0.182 1.182 12 C 0.087 3.913 13 C -0.075 4.075 14 N -0.244 5.244 15 C -0.200 4.200 16 C -0.202 4.202 17 N -0.096 5.096 18 C -0.056 4.056 19 C -0.184 4.184 20 C -0.190 4.190 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.209 0.791 30 H 0.217 0.783 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.829 -0.381 7.640 9.047 hybrid contribution -0.208 1.128 -0.318 1.191 sum 4.621 0.748 7.322 8.691 Atomic orbital electron populations 1.22167 0.97475 1.01234 1.00621 1.20960 0.93177 0.84471 0.99482 1.44204 1.74914 1.12592 1.00700 1.18442 1.35323 0.93866 0.90684 0.94584 1.25645 0.98185 0.96876 0.97336 1.69925 1.42635 1.07320 1.36162 0.86527 0.82575 0.78428 0.79281 1.20461 1.23450 1.18221 1.19625 0.86511 0.96558 0.88606 1.24657 0.93806 0.90421 0.98643 1.70174 1.13037 1.22179 1.19010 1.22692 0.91580 0.99870 1.05834 1.23053 0.93652 0.99520 1.03928 1.44907 1.07872 1.20399 1.36398 1.21745 0.98190 0.87959 0.97729 1.23576 0.95323 0.99393 1.00062 1.23068 1.01276 1.02037 0.92667 0.94396 0.90820 0.93876 0.94070 0.92787 0.92802 0.90162 0.92989 0.79111 0.78271 0.87370 0.85763 0.85880 0.89548 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 10.24 71.98 0.74 -4.91 16 2 C 0.14 5.95 6.39 86.38 0.55 6.50 16 3 N -0.60 -28.52 2.04 -706.33 -1.44 -29.96 16 4 C -0.25 -13.64 9.91 84.03 0.83 -12.81 16 5 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 6 C 0.02 0.98 4.88 84.86 0.41 1.39 16 7 N -0.92 -50.53 13.97 21.65 0.30 -50.22 16 8 Si 0.90 42.62 24.48 68.60 1.68 44.30 16 9 H -0.28 -12.48 6.70 99.48 0.67 -11.82 16 10 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.21 9.61 4.79 85.63 0.41 10.02 16 13 C 0.19 8.23 7.49 138.13 1.03 9.27 16 14 N -0.52 -21.90 11.25 -188.13 -2.12 -24.02 16 15 C -0.05 -1.78 11.87 83.52 0.99 -0.79 16 16 C -0.07 -2.22 10.86 83.09 0.90 -1.32 16 17 N -0.42 -16.29 3.08 -491.91 -1.52 -17.81 16 18 C 0.05 1.81 6.57 44.99 0.30 2.11 16 19 C -0.15 -3.97 9.99 30.59 0.31 -3.66 16 20 C -0.15 -5.47 10.40 30.60 0.32 -5.15 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 25 H 0.05 2.15 8.07 -2.39 -0.02 2.13 16 26 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.08 3.35 8.07 -2.38 -0.02 3.33 16 28 H 0.05 2.42 2.47 -2.39 -0.01 2.42 16 29 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 30 H 0.20 4.69 7.13 -2.91 -0.02 4.67 16 31 H 0.11 4.69 6.35 -2.39 -0.02 4.67 16 32 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.12 2.66 6.90 -2.39 -0.02 2.64 16 34 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 Total: -1.00 -61.92 289.44 4.73 -57.19 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.03 Total: 19.86 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 6.79 Total: 0.66 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.77 Total: -122.01 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.68 Total: 44.30 kcal Total: -61.92 4.73 -57.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.957 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds