Wall clock time and date at job start Sun Mar 29 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03998 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47009 * 260.02196 * 5 4 3 7 7 C 1.46904 * 110.99808 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46922 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99726 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99763 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99857 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00272 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47243 * 89.99883 * 12 10 8 14 14 H 1.48496 * 109.47188 * 209.99973 * 12 10 8 15 15 H 1.48494 * 109.46943 * 330.00058 * 12 10 8 16 16 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 17 17 C 1.50696 * 125.89915 * 179.97438 * 16 4 3 18 18 C 1.53006 * 117.50082 * 188.64175 * 17 16 4 19 19 C 1.52997 * 117.50347 * 120.01836 * 17 16 4 20 20 N 1.30844 * 108.20609 * 0.02562 * 16 4 3 21 21 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 22 22 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 23 23 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 24 24 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 25 25 H 1.08998 * 109.46946 * 20.02082 * 5 4 3 26 26 H 1.09000 * 109.47106 * 140.02005 * 5 4 3 27 27 H 1.00903 * 110.99534 * 56.04988 * 6 5 4 28 28 H 1.09007 * 109.47131 * 299.99864 * 7 6 5 29 29 H 1.09000 * 109.46841 * 59.99687 * 7 6 5 30 30 H 0.96998 * 120.00045 * 179.97438 * 11 10 8 31 31 H 1.09001 * 115.54900 * 334.34224 * 17 16 4 32 32 H 1.09001 * 117.49643 * 359.97438 * 18 17 16 33 33 H 1.08998 * 117.49581 * 145.01901 * 18 17 16 34 34 H 1.09005 * 117.50046 * 214.98504 * 19 17 16 35 35 H 1.09000 * 117.49674 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0013 6 7 5.3050 1.6358 -1.3657 7 6 6.5023 2.4861 -1.4049 8 6 7.0232 2.5553 -2.8173 9 1 6.5158 2.0207 -3.6067 10 6 8.1481 3.3002 -3.1015 11 7 8.6030 3.3602 -4.3340 12 14 9.0260 4.2243 -1.7359 13 1 10.0620 3.3483 -1.1320 14 1 9.6702 5.4396 -2.2953 15 1 8.0437 4.6194 -0.6947 16 6 3.5347 -0.7320 -0.0003 17 6 4.7497 -1.6235 -0.0014 18 6 4.5254 -3.1233 -0.2048 19 6 4.9189 -2.5886 1.1737 20 7 2.2892 -1.1327 -0.0002 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.9281 2.1193 -0.0007 25 1 4.5003 2.5417 0.3505 26 1 5.5227 1.1177 0.6587 27 1 4.6030 1.9693 -2.0092 28 1 6.2470 3.4891 -1.0626 29 1 7.2688 2.0644 -0.7547 30 1 9.3941 3.8845 -4.5340 31 1 5.6527 -1.1869 -0.4281 32 1 3.4989 -3.4651 -0.3375 33 1 5.2809 -3.6736 -0.7656 34 1 5.9332 -2.7872 1.5199 35 1 4.1515 -2.5785 1.9477 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894081897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:56 Heat of formation + Delta-G solvation = 104.044546 kcal Electronic energy + Delta-G solvation = -16058.440879 eV Core-core repulsion = 13480.072950 eV Total energy + Delta-G solvation = -2578.367929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11707 -36.90667 -35.51142 -32.98501 -32.22392 -30.32652 -27.95309 -26.51893 -23.87541 -22.70603 -22.19496 -21.02147 -20.20704 -18.94273 -16.99575 -16.43066 -15.48687 -15.18911 -14.87933 -14.40550 -14.04754 -13.66418 -13.44619 -13.09719 -12.65387 -12.60289 -12.30383 -11.83534 -11.55330 -11.37404 -11.15794 -10.77704 -10.62876 -10.51524 -10.43183 -10.01560 -9.81250 -9.24890 -8.89727 -8.55153 -8.14329 -7.34746 -6.02080 -3.99638 1.99863 2.59575 2.85778 3.31627 3.38594 3.41056 4.17474 4.45318 4.50534 4.73678 4.95686 5.02568 5.13521 5.19322 5.25922 5.30662 5.35505 5.48329 5.58545 5.77020 5.85734 5.95571 6.05277 6.22786 6.28622 6.43543 6.48363 6.83661 6.85401 7.08159 7.14742 7.66035 7.90872 7.98071 8.42607 8.71042 9.07016 9.60186 11.11349 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.005708 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.754644 B = 4904.633102 C = 5431.971589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.384 5.384 3 C 0.050 3.950 4 C -0.211 4.211 5 C 0.132 3.868 6 N -0.674 5.674 7 C 0.163 3.837 8 C -0.513 4.513 9 H 0.079 0.921 10 C 0.068 3.932 11 N -0.902 5.902 12 Si 0.878 3.122 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.268 1.268 16 C 0.130 3.870 17 C -0.074 4.074 18 C -0.168 4.168 19 C -0.168 4.168 20 N -0.304 5.304 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.170 0.830 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.334 0.666 28 H -0.017 1.017 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 -6.847 11.682 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.166 5.166 3 C -0.096 4.096 4 C -0.222 4.222 5 C 0.002 3.998 6 N -0.305 5.305 7 C 0.036 3.964 8 C -0.552 4.552 9 H 0.097 0.903 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.036 4.036 17 C -0.094 4.094 18 C -0.205 4.205 19 C -0.207 4.207 20 N -0.126 5.126 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.187 0.813 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.152 0.848 28 H 0.000 1.000 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.267 -8.320 11.618 20.193 hybrid contribution 0.529 2.283 0.670 2.437 sum -13.737 -6.037 12.288 19.395 Atomic orbital electron populations 1.21748 0.74657 1.04212 1.02817 1.48218 1.06144 1.03817 1.58393 1.22299 0.90833 0.93196 1.03238 1.19992 0.94278 0.93601 1.14362 1.20150 0.91943 0.94745 0.92973 1.60483 1.08952 1.56518 1.04539 1.20008 0.88675 0.89528 0.98229 1.21080 1.11497 1.29770 0.92831 0.90337 1.24911 0.96884 0.96250 0.95335 1.69907 1.24067 1.41529 1.18610 0.86822 0.80231 0.79747 0.82706 1.20132 1.21319 1.19249 1.21189 0.91675 0.92853 0.97885 1.20417 0.95648 0.89510 1.03800 1.22932 1.02895 0.95474 0.99216 1.22963 1.02536 1.03437 0.91723 1.77187 1.01193 1.07791 1.26474 0.91266 0.89726 0.89606 0.81302 0.95962 0.91010 0.84843 0.99972 0.95975 0.92714 0.84630 0.88477 0.88440 0.88352 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 11.47 59.85 0.69 1.57 16 2 N -0.38 -5.15 4.01 -68.16 -0.27 -5.42 16 3 C 0.05 0.68 11.40 -17.22 -0.20 0.49 16 4 C -0.21 -3.41 5.61 -105.05 -0.59 -4.00 16 5 C 0.13 2.31 5.94 -4.98 -0.03 2.28 16 6 N -0.67 -14.21 6.48 -116.33 -0.75 -14.97 16 7 C 0.16 3.99 4.51 -4.97 -0.02 3.97 16 8 C -0.51 -14.83 9.87 -34.44 -0.34 -15.17 16 9 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 12 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 16 C 0.13 2.14 6.75 -82.41 -0.56 1.59 16 17 C -0.07 -1.12 6.04 -91.77 -0.55 -1.67 16 18 C -0.17 -2.19 10.14 -26.73 -0.27 -2.46 16 19 C -0.17 -2.10 10.23 -26.73 -0.27 -2.37 16 20 N -0.30 -4.88 12.15 33.67 0.41 -4.47 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.33 7.00 8.72 -39.29 -0.34 6.66 16 28 H -0.02 -0.42 7.20 -51.93 -0.37 -0.80 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.14 2.24 8.14 -51.93 -0.42 1.82 16 32 H 0.10 1.30 7.89 -51.93 -0.41 0.89 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -33.14 301.33 -7.55 -40.69 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.34 Total: 3.71 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.24 Total: -13.90 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.16 Total: -52.04 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.14 -7.55 -40.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894081897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.735 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds