Wall clock time and date at job start Sun Mar 29 2020 22:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03998 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47009 * 260.02196 * 5 4 3 7 7 C 1.46904 * 110.99808 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46922 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99726 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99763 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99857 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00272 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47243 * 89.99883 * 12 10 8 14 14 H 1.48496 * 109.47188 * 209.99973 * 12 10 8 15 15 H 1.48494 * 109.46943 * 330.00058 * 12 10 8 16 16 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 17 17 C 1.50696 * 125.89915 * 179.97438 * 16 4 3 18 18 C 1.53006 * 117.50082 * 188.64175 * 17 16 4 19 19 C 1.52997 * 117.50347 * 120.01836 * 17 16 4 20 20 N 1.30844 * 108.20609 * 0.02562 * 16 4 3 21 21 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 22 22 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 23 23 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 24 24 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 25 25 H 1.08998 * 109.46946 * 20.02082 * 5 4 3 26 26 H 1.09000 * 109.47106 * 140.02005 * 5 4 3 27 27 H 1.00903 * 110.99534 * 56.04988 * 6 5 4 28 28 H 1.09007 * 109.47131 * 299.99864 * 7 6 5 29 29 H 1.09000 * 109.46841 * 59.99687 * 7 6 5 30 30 H 0.96998 * 120.00045 * 179.97438 * 11 10 8 31 31 H 1.09001 * 115.54900 * 334.34224 * 17 16 4 32 32 H 1.09001 * 117.49643 * 359.97438 * 18 17 16 33 33 H 1.08998 * 117.49581 * 145.01901 * 18 17 16 34 34 H 1.09005 * 117.50046 * 214.98504 * 19 17 16 35 35 H 1.09000 * 117.49674 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0013 6 7 5.3050 1.6358 -1.3657 7 6 6.5023 2.4861 -1.4049 8 6 7.0232 2.5553 -2.8173 9 1 6.5158 2.0207 -3.6067 10 6 8.1481 3.3002 -3.1015 11 7 8.6030 3.3602 -4.3340 12 14 9.0260 4.2243 -1.7359 13 1 10.0620 3.3483 -1.1320 14 1 9.6702 5.4396 -2.2953 15 1 8.0437 4.6194 -0.6947 16 6 3.5347 -0.7320 -0.0003 17 6 4.7497 -1.6235 -0.0014 18 6 4.5254 -3.1233 -0.2048 19 6 4.9189 -2.5886 1.1737 20 7 2.2892 -1.1327 -0.0002 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.9281 2.1193 -0.0007 25 1 4.5003 2.5417 0.3505 26 1 5.5227 1.1177 0.6587 27 1 4.6030 1.9693 -2.0092 28 1 6.2470 3.4891 -1.0626 29 1 7.2688 2.0644 -0.7547 30 1 9.3941 3.8845 -4.5340 31 1 5.6527 -1.1869 -0.4281 32 1 3.4989 -3.4651 -0.3375 33 1 5.2809 -3.6736 -0.7656 34 1 5.9332 -2.7872 1.5199 35 1 4.1515 -2.5785 1.9477 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894081897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:56 Heat of formation + Delta-G solvation = 80.926116 kcal Electronic energy + Delta-G solvation = -16059.443370 eV Core-core repulsion = 13480.072950 eV Total energy + Delta-G solvation = -2579.370419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20770 -37.96253 -37.15925 -34.69675 -33.65678 -31.73165 -29.40784 -27.83239 -25.34138 -23.77212 -23.22564 -22.96262 -21.34136 -20.08426 -18.95328 -17.73587 -16.63485 -16.45957 -16.18387 -15.92251 -15.40629 -15.31921 -14.72017 -14.42610 -14.20800 -13.62355 -13.54367 -13.28580 -13.00799 -12.64104 -12.51437 -12.35939 -12.16447 -11.86143 -11.73261 -11.61219 -11.44910 -11.09038 -10.77466 -9.98966 -9.29366 -8.98400 -8.26835 -6.31239 0.92998 1.38441 1.39945 1.51165 1.66187 1.71214 2.37472 3.07521 3.09451 3.53264 3.69559 3.85637 4.05407 4.12587 4.21246 4.32787 4.42906 4.46073 4.61954 4.69470 4.77931 4.79897 4.83683 4.95574 4.99799 5.14662 5.24735 5.28839 5.33768 5.56856 5.70085 6.00979 6.19209 6.63313 6.71185 6.79116 6.82951 7.34004 8.90179 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.005708 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.754644 B = 4904.633102 C = 5431.971589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.380 5.380 3 C 0.066 3.934 4 C -0.246 4.246 5 C 0.141 3.859 6 N -0.683 5.683 7 C 0.176 3.824 8 C -0.526 4.526 9 H 0.033 0.967 10 C 0.007 3.993 11 N -0.950 5.950 12 Si 0.953 3.047 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.248 1.248 16 C 0.115 3.885 17 C -0.100 4.100 18 C -0.162 4.162 19 C -0.148 4.148 20 N -0.329 5.329 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.088 0.912 24 H 0.205 0.795 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.333 0.667 28 H -0.011 1.011 29 H 0.025 0.975 30 H 0.267 0.733 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 -6.181 13.907 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.162 5.162 3 C -0.082 4.082 4 C -0.257 4.257 5 C 0.012 3.988 6 N -0.314 5.314 7 C 0.047 3.953 8 C -0.564 4.564 9 H 0.051 0.949 10 C -0.191 4.191 11 N -0.591 5.591 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.171 1.171 16 C -0.050 4.050 17 C -0.120 4.120 18 C -0.199 4.199 19 C -0.186 4.186 20 N -0.153 5.153 21 H 0.107 0.893 22 H 0.131 0.869 23 H 0.106 0.894 24 H 0.221 0.779 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.150 0.850 28 H 0.007 0.993 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.297 -7.684 13.859 22.025 hybrid contribution 0.689 2.015 -0.096 2.132 sum -14.608 -5.669 13.762 20.855 Atomic orbital electron populations 1.22172 0.71760 1.05792 1.04601 1.48656 1.07759 1.03087 1.56694 1.22776 0.90075 0.94652 1.00689 1.19975 0.94846 0.93477 1.17421 1.20054 0.92513 0.95799 0.90455 1.60384 1.08372 1.55656 1.06968 1.19749 0.90030 0.90390 0.95130 1.21353 1.11644 1.29255 0.94187 0.94854 1.25905 0.97732 0.97266 0.98149 1.70068 1.24941 1.42832 1.21269 0.85625 0.79168 0.78211 0.79364 1.19077 1.20761 1.17136 1.21385 0.92147 0.93341 0.98173 1.20367 0.94923 0.90471 1.06288 1.22958 1.02995 0.94005 0.99951 1.23005 1.03504 1.01002 0.91058 1.77121 1.01324 1.09295 1.27525 0.89328 0.86890 0.89368 0.77853 0.94451 0.91388 0.85031 0.99332 0.95700 0.92415 0.86768 0.88974 0.87298 0.86590 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 11.47 127.77 1.47 2.77 16 2 N -0.38 -9.38 4.01 -369.56 -1.48 -10.87 16 3 C 0.07 1.64 11.40 83.54 0.95 2.59 16 4 C -0.25 -7.70 5.61 -20.14 -0.11 -7.81 16 5 C 0.14 4.79 5.94 85.56 0.51 5.30 16 6 N -0.68 -28.82 6.48 -521.97 -3.38 -32.20 16 7 C 0.18 8.48 4.51 85.56 0.39 8.86 16 8 C -0.53 -31.07 9.87 25.60 0.25 -30.82 16 9 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 10 C 0.01 0.39 5.47 84.65 0.46 0.85 16 11 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 12 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 16 C 0.11 3.75 6.75 43.10 0.29 4.04 16 17 C -0.10 -3.07 6.04 -11.54 -0.07 -3.14 16 18 C -0.16 -4.16 10.14 30.60 0.31 -3.85 16 19 C -0.15 -3.54 10.23 30.59 0.31 -3.23 16 20 N -0.33 -10.29 12.15 -47.39 -0.58 -10.86 16 21 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 22 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.33 14.05 8.72 -89.69 -0.78 13.27 16 28 H -0.01 -0.51 7.20 -2.38 -0.02 -0.53 16 29 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 30 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.09 2.45 7.89 -2.39 -0.02 2.43 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.01 301.33 1.74 -71.28 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.24 Total: 20.89 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.76 Total: -24.43 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.14 Total: -113.86 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -73.01 1.74 -71.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894081897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.202 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds