Wall clock time and date at job start Sun Mar 29 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40077 * 126.03761 * 2 1 4 4 C 1.30842 * 108.20614 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.19805 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03663 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47306 * 260.02784 * 6 5 4 8 8 C 1.46894 * 111.00636 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47814 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00624 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00565 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46923 * 89.99708 * 13 11 9 15 15 H 1.48497 * 109.47461 * 209.99587 * 13 11 9 16 16 H 1.48500 * 109.47068 * 330.00171 * 13 11 9 17 17 C 1.34948 * 126.03311 * 180.28948 * 2 1 3 18 18 C 1.50695 * 126.13307 * 359.97438 * 17 2 1 19 19 C 1.52995 * 117.49862 * 310.78789 * 18 17 2 20 20 C 1.52997 * 117.50239 * 242.12623 * 18 17 2 21 21 H 1.08998 * 109.47517 * 95.37149 * 1 2 3 22 22 H 1.09004 * 109.47068 * 215.36893 * 1 2 3 23 23 H 1.08996 * 109.47020 * 335.36898 * 1 2 3 24 24 H 1.07997 * 125.89883 * 179.97438 * 4 3 2 25 25 H 1.08990 * 109.47535 * 140.02507 * 6 5 4 26 26 H 1.08999 * 109.46924 * 20.02258 * 6 5 4 27 27 H 1.00905 * 110.99993 * 303.95354 * 7 6 5 28 28 H 1.09001 * 109.46910 * 300.00179 * 8 7 6 29 29 H 1.09004 * 109.47036 * 59.99731 * 8 7 6 30 30 H 0.96993 * 120.00356 * 180.02562 * 12 11 9 31 31 H 1.09002 * 115.55159 * 96.45101 * 18 17 2 32 32 H 1.09001 * 117.50208 * 359.97438 * 19 18 17 33 33 H 1.09007 * 117.50257 * 145.02028 * 19 18 17 34 34 H 1.08998 * 117.49855 * 214.97706 * 20 18 17 35 35 H 1.09000 * 117.49972 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 4.7679 -1.5454 -0.0029 7 7 5.0250 -2.0248 -1.3675 8 6 6.2143 -2.8861 -1.4077 9 6 6.4454 -3.3581 -2.8200 10 1 5.7754 -3.0494 -3.6089 11 6 7.5114 -4.1847 -3.1050 12 7 8.3269 -4.5610 -2.1443 13 14 7.7974 -4.7703 -4.8556 14 1 8.6768 -3.8051 -5.5629 15 1 8.4468 -6.1056 -4.8311 16 1 6.4960 -4.8657 -5.5645 17 6 2.2589 -1.0913 -0.0055 18 6 1.7974 -2.5258 -0.0122 19 6 0.7374 -2.9317 1.0137 20 6 2.1854 -3.3984 1.1831 21 1 -0.3634 -0.0962 -1.0231 22 1 -0.3633 -0.8380 0.5949 23 1 -0.3633 0.9341 0.4283 24 1 4.4054 1.3709 -0.0011 25 1 4.6044 -2.3974 0.6567 26 1 5.6263 -0.9731 0.3487 27 1 4.2188 -2.5035 -1.7405 28 1 7.0825 -2.3228 -1.0658 29 1 6.0612 -3.7476 -0.7576 30 1 9.0771 -5.1422 -2.3448 31 1 1.7582 -3.0025 -0.9917 32 1 0.3742 -2.1613 1.6939 33 1 0.0012 -3.6758 0.7095 34 1 2.4012 -4.4492 0.9901 35 1 2.7749 -2.9350 1.9742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894082422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:00 Heat of formation + Delta-G solvation = 101.107605 kcal Electronic energy + Delta-G solvation = -16275.980303 eV Core-core repulsion = 13697.485018 eV Total energy + Delta-G solvation = -2578.495284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18620 -37.04899 -35.34207 -33.14488 -32.21393 -30.02939 -27.73897 -26.06243 -23.95285 -22.85358 -22.40359 -21.20824 -20.46772 -19.05170 -16.75984 -16.19438 -15.73133 -15.01146 -14.61853 -14.39989 -14.11326 -13.86070 -13.36625 -13.19831 -12.64207 -12.40776 -12.05951 -11.81458 -11.60130 -11.24835 -11.05609 -10.86521 -10.69067 -10.57865 -10.51242 -10.13454 -9.88147 -9.14218 -9.05288 -8.43706 -8.06750 -7.12833 -5.98732 -4.00132 2.03170 2.62792 3.06328 3.34945 3.40583 3.44481 3.64336 4.43038 4.47507 4.59994 4.74221 4.86133 5.08020 5.22706 5.30825 5.33514 5.37106 5.46324 5.63614 5.71312 5.78227 5.87569 5.93516 6.05866 6.23486 6.38169 6.60619 6.91034 7.19537 7.33866 7.50119 7.84926 7.93228 8.20002 8.51431 8.71076 9.09880 9.64626 11.12348 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031831 B = 0.005479 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.421567 B = 5108.762795 C = 5394.367069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 N -0.307 5.307 4 C 0.063 3.937 5 C -0.206 4.206 6 C 0.135 3.865 7 N -0.684 5.684 8 C 0.194 3.806 9 C -0.511 4.511 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.110 3.890 18 C -0.097 4.097 19 C -0.181 4.181 20 C -0.152 4.152 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.182 0.818 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.326 0.674 28 H 0.028 0.972 29 H -0.015 1.015 30 H 0.261 0.739 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 4.470 7.288 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.158 5.158 3 N -0.128 5.128 4 C -0.123 4.123 5 C -0.218 4.218 6 C 0.004 3.996 7 N -0.314 5.314 8 C 0.067 3.933 9 C -0.550 4.550 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.017 4.017 18 C -0.116 4.116 19 C -0.218 4.218 20 C -0.189 4.189 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.199 0.801 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.046 0.954 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.200 5.957 7.140 18.679 hybrid contribution 0.475 -1.778 -0.613 1.940 sum -15.725 4.179 6.527 17.531 Atomic orbital electron populations 1.21853 0.75110 1.04084 1.03095 1.48263 1.06032 1.03316 1.58174 1.77304 1.01857 1.07678 1.25920 1.23739 0.94886 0.94684 0.99008 1.19950 0.93800 0.94019 1.13997 1.20132 0.92539 0.95089 0.91828 1.60694 1.07938 1.44878 1.17891 1.19550 0.87520 0.89555 0.96669 1.21201 1.11496 1.28221 0.94085 0.92094 1.24976 0.95983 0.96289 0.97306 1.69962 1.16084 1.35875 1.31917 0.86507 0.78316 0.77882 0.84729 1.20631 1.21351 1.19930 1.19838 0.90671 0.88327 1.02841 1.20464 1.04632 0.89928 0.96617 1.23084 0.92908 1.03642 1.02175 1.22990 0.96866 1.00060 0.99010 0.91114 0.89668 0.89662 0.80086 0.95697 0.91296 0.85808 0.95432 0.99689 0.92984 0.85664 0.88903 0.88071 0.87696 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 11.19 59.85 0.67 1.63 16 2 N -0.38 -5.34 4.01 -63.88 -0.26 -5.60 16 3 N -0.31 -4.99 12.58 30.62 0.39 -4.61 16 4 C 0.06 1.01 11.96 -17.36 -0.21 0.81 16 5 C -0.21 -3.46 5.61 -105.05 -0.59 -4.05 16 6 C 0.13 2.50 5.87 -4.98 -0.03 2.47 16 7 N -0.68 -15.14 6.48 -116.35 -0.75 -15.90 16 8 C 0.19 5.14 5.44 -4.98 -0.03 5.11 16 9 C -0.51 -14.69 9.32 -34.45 -0.32 -15.01 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.11 1.64 6.36 -82.27 -0.52 1.12 16 18 C -0.10 -1.19 5.68 -91.78 -0.52 -1.72 16 19 C -0.18 -1.69 8.94 -26.70 -0.24 -1.93 16 20 C -0.15 -1.72 9.29 -26.70 -0.25 -1.97 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.64 5.34 -51.93 -0.28 0.36 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 25 H 0.03 0.45 6.99 -51.93 -0.36 0.09 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.33 6.99 8.72 -39.29 -0.34 6.65 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.09 0.82 6.86 -51.93 -0.36 0.47 16 33 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -32.55 297.53 -7.66 -40.22 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.10 Total: 2.85 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.13 Total: -12.03 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.11 Total: -52.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.55 -7.66 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.324 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds