Wall clock time and date at job start Sun Mar 29 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40077 * 126.03761 * 2 1 4 4 C 1.30842 * 108.20614 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.19805 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03663 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47306 * 260.02784 * 6 5 4 8 8 C 1.46894 * 111.00636 * 179.97438 * 7 6 5 9 9 C 1.50691 * 109.47814 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00624 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99825 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00565 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46923 * 89.99708 * 13 11 9 15 15 H 1.48497 * 109.47461 * 209.99587 * 13 11 9 16 16 H 1.48500 * 109.47068 * 330.00171 * 13 11 9 17 17 C 1.34948 * 126.03311 * 180.28948 * 2 1 3 18 18 C 1.50695 * 126.13307 * 359.97438 * 17 2 1 19 19 C 1.52995 * 117.49862 * 310.78789 * 18 17 2 20 20 C 1.52997 * 117.50239 * 242.12623 * 18 17 2 21 21 H 1.08998 * 109.47517 * 95.37149 * 1 2 3 22 22 H 1.09004 * 109.47068 * 215.36893 * 1 2 3 23 23 H 1.08996 * 109.47020 * 335.36898 * 1 2 3 24 24 H 1.07997 * 125.89883 * 179.97438 * 4 3 2 25 25 H 1.08990 * 109.47535 * 140.02507 * 6 5 4 26 26 H 1.08999 * 109.46924 * 20.02258 * 6 5 4 27 27 H 1.00905 * 110.99993 * 303.95354 * 7 6 5 28 28 H 1.09001 * 109.46910 * 300.00179 * 8 7 6 29 29 H 1.09004 * 109.47036 * 59.99731 * 8 7 6 30 30 H 0.96993 * 120.00356 * 180.02562 * 12 11 9 31 31 H 1.09002 * 115.55159 * 96.45101 * 18 17 2 32 32 H 1.09001 * 117.50208 * 359.97438 * 19 18 17 33 33 H 1.09007 * 117.50257 * 145.02028 * 19 18 17 34 34 H 1.08998 * 117.49855 * 214.97706 * 20 18 17 35 35 H 1.09000 * 117.49972 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 4.7679 -1.5454 -0.0029 7 7 5.0250 -2.0248 -1.3675 8 6 6.2143 -2.8861 -1.4077 9 6 6.4454 -3.3581 -2.8200 10 1 5.7754 -3.0494 -3.6089 11 6 7.5114 -4.1847 -3.1050 12 7 8.3269 -4.5610 -2.1443 13 14 7.7974 -4.7703 -4.8556 14 1 8.6768 -3.8051 -5.5629 15 1 8.4468 -6.1056 -4.8311 16 1 6.4960 -4.8657 -5.5645 17 6 2.2589 -1.0913 -0.0055 18 6 1.7974 -2.5258 -0.0122 19 6 0.7374 -2.9317 1.0137 20 6 2.1854 -3.3984 1.1831 21 1 -0.3634 -0.0962 -1.0231 22 1 -0.3633 -0.8380 0.5949 23 1 -0.3633 0.9341 0.4283 24 1 4.4054 1.3709 -0.0011 25 1 4.6044 -2.3974 0.6567 26 1 5.6263 -0.9731 0.3487 27 1 4.2188 -2.5035 -1.7405 28 1 7.0825 -2.3228 -1.0658 29 1 6.0612 -3.7476 -0.7576 30 1 9.0771 -5.1422 -2.3448 31 1 1.7582 -3.0025 -0.9917 32 1 0.3742 -2.1613 1.6939 33 1 0.0012 -3.6758 0.7095 34 1 2.4012 -4.4492 0.9901 35 1 2.7749 -2.9350 1.9742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:00 Heat of formation + Delta-G solvation = 79.104323 kcal Electronic energy + Delta-G solvation = -16276.934437 eV Core-core repulsion = 13697.485018 eV Total energy + Delta-G solvation = -2579.449418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.34434 -37.97857 -37.09992 -34.79716 -33.79148 -31.44098 -29.19823 -27.61531 -25.39857 -24.01701 -23.45088 -23.03197 -21.62619 -20.19011 -18.58171 -17.57295 -16.93271 -16.51459 -16.21025 -15.64136 -15.37681 -15.04888 -14.96391 -14.65662 -14.04289 -13.53572 -13.48509 -13.38868 -12.85654 -12.68458 -12.56091 -12.47813 -12.34957 -12.03015 -11.77499 -11.51021 -11.28955 -11.13771 -10.63022 -10.16702 -9.36146 -8.94428 -8.19076 -6.30117 0.87149 1.42588 1.44704 1.55551 1.62593 1.78616 2.42858 2.76628 3.13808 3.48236 3.62673 3.86217 3.93622 3.98011 4.19813 4.32336 4.37895 4.44040 4.58208 4.64411 4.74695 4.85347 4.92172 5.00363 5.07732 5.13661 5.19651 5.27532 5.34422 5.64202 5.68531 6.06633 6.13404 6.53560 6.73700 6.78020 6.94087 7.40756 8.92223 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031831 B = 0.005479 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.421567 B = 5108.762795 C = 5394.367069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.371 5.371 3 N -0.326 5.326 4 C 0.052 3.948 5 C -0.238 4.238 6 C 0.144 3.856 7 N -0.682 5.682 8 C 0.210 3.790 9 C -0.534 4.534 10 H 0.061 0.939 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.122 3.878 18 C -0.118 4.118 19 C -0.145 4.145 20 C -0.164 4.164 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.193 0.807 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.330 0.670 28 H -0.001 1.001 29 H -0.036 1.036 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 4.059 6.648 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.153 5.153 3 N -0.148 5.148 4 C -0.133 4.133 5 C -0.249 4.249 6 C 0.014 3.986 7 N -0.313 5.313 8 C 0.082 3.918 9 C -0.572 4.572 10 H 0.079 0.921 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.188 1.188 17 C -0.007 4.007 18 C -0.138 4.138 19 C -0.182 4.182 20 C -0.202 4.202 21 H 0.102 0.898 22 H 0.128 0.872 23 H 0.115 0.885 24 H 0.210 0.790 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.017 0.983 29 H -0.019 1.019 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.253 5.574 6.510 20.165 hybrid contribution 1.024 -1.629 -0.350 1.956 sum -17.230 3.945 6.160 18.718 Atomic orbital electron populations 1.22269 0.72348 1.05887 1.04613 1.48641 1.07560 1.02518 1.56622 1.77250 1.01992 1.08859 1.26690 1.23975 0.95537 0.94740 0.99016 1.19807 0.93883 0.94122 1.17115 1.19999 0.93544 0.95295 0.89782 1.60593 1.06800 1.43442 1.20459 1.19194 0.88339 0.88820 0.95458 1.21526 1.11994 1.28839 0.94868 0.92124 1.25913 0.95461 0.96153 1.01976 1.70086 1.16585 1.36350 1.34328 0.85356 0.78576 0.77486 0.78997 1.20032 1.20530 1.18830 1.20127 0.90253 0.89642 1.00675 1.20520 1.07527 0.88484 0.97292 1.23200 0.91943 1.03429 0.99629 1.23015 0.98974 0.99939 0.98242 0.89820 0.87234 0.88452 0.78999 0.95462 0.92010 0.85281 0.98252 1.01866 0.92625 0.85747 0.87891 0.85444 0.87421 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 11.19 127.77 1.43 2.86 16 2 N -0.37 -9.94 4.01 -356.03 -1.43 -11.37 16 3 N -0.33 -10.36 12.58 -57.02 -0.72 -11.08 16 4 C 0.05 1.69 11.96 85.24 1.02 2.71 16 5 C -0.24 -8.00 5.61 -20.14 -0.11 -8.11 16 6 C 0.14 5.50 5.87 85.56 0.50 6.00 16 7 N -0.68 -30.93 6.48 -522.02 -3.38 -34.31 16 8 C 0.21 11.50 5.44 85.56 0.47 11.97 16 9 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16 10 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 11 C 0.00 0.18 5.46 84.65 0.46 0.64 16 12 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 13 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 17 C 0.12 3.51 6.36 41.40 0.26 3.77 16 18 C -0.12 -2.73 5.68 -11.54 -0.07 -2.80 16 19 C -0.15 -2.24 8.94 30.62 0.27 -1.96 16 20 C -0.16 -3.52 9.29 30.62 0.28 -3.24 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.11 1.22 5.34 -2.39 -0.01 1.20 16 23 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.19 5.44 8.06 -2.91 -0.02 5.41 16 25 H 0.03 1.03 6.99 -2.39 -0.02 1.01 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.33 14.37 8.72 -89.69 -0.78 13.59 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H -0.04 -2.11 8.14 -2.39 -0.02 -2.13 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.10 1.42 6.86 -2.39 -0.02 1.40 16 33 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.08 7.98 -2.39 -0.02 2.06 16 Total: -1.00 -70.10 297.53 1.85 -68.25 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.30 Total: 17.26 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.76 Total: -18.98 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -5.24 Total: -113.26 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.10 1.85 -68.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.353 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds