Wall clock time and date at job start Sun Mar 29 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40018 * 126.02999 * 2 1 4 4 C 1.31041 * 108.24534 * 180.02562 * 3 2 1 5 5 C 1.39853 * 108.12799 * 359.73538 * 4 3 2 6 6 C 1.34888 * 126.02978 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.11517 * 359.97438 * 6 2 1 8 8 N 1.46903 * 109.47245 * 90.01795 * 7 6 2 9 9 C 1.46893 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47216 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 119.99848 * 14 12 10 17 17 H 1.48501 * 109.47057 * 239.99829 * 14 12 10 18 18 C 1.51285 * 109.55714 * 180.34534 * 5 4 3 19 19 C 1.54341 * 105.21627 * 17.37604 * 18 5 4 20 20 C 1.51321 * 142.36113 * 180.02562 * 4 3 2 21 21 H 1.08991 * 109.47447 * 269.96622 * 1 2 3 22 22 H 1.09000 * 109.47128 * 29.96650 * 1 2 3 23 23 H 1.09008 * 109.46655 * 149.96247 * 1 2 3 24 24 H 1.08993 * 109.46849 * 330.02118 * 7 6 2 25 25 H 1.09003 * 109.46941 * 210.01444 * 7 6 2 26 26 H 1.00893 * 110.99793 * 303.95739 * 8 7 6 27 27 H 1.09001 * 109.46739 * 60.00281 * 9 8 7 28 28 H 1.09000 * 109.47767 * 300.00540 * 9 8 7 29 29 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 30 30 H 1.08996 * 110.29977 * 136.31363 * 18 5 4 31 31 H 1.09008 * 110.29757 * 258.44424 * 18 5 4 32 32 H 1.09002 * 110.76754 * 91.76228 * 19 18 5 33 33 H 1.08994 * 110.77338 * 214.99151 * 19 18 5 34 34 H 1.08999 * 110.29170 * 281.70051 * 20 4 3 35 35 H 1.08998 * 110.29454 * 43.82486 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2886 1.1323 0.0000 4 6 3.5364 0.7321 -0.0006 5 6 3.5448 -0.6664 0.0052 6 6 2.2584 -1.0909 -0.0005 7 6 1.7964 -2.5253 -0.0006 8 7 1.6461 -2.9913 -1.3856 9 6 1.1965 -4.3891 -1.4249 10 6 1.0534 -4.8308 -2.8586 11 1 1.2748 -4.1420 -3.6604 12 6 0.6399 -6.1141 -3.1467 13 7 0.3698 -6.9527 -2.1702 14 14 0.4632 -6.6617 -4.9239 15 1 0.8243 -5.5388 -5.8261 16 1 1.3662 -7.8125 -5.1794 17 1 -0.9419 -7.0689 -5.1790 18 6 4.9734 -1.1642 0.0133 19 6 5.8217 0.0464 0.4568 20 6 4.9597 1.2460 -0.0005 21 1 -0.3634 -0.0006 1.0276 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5145 24 1 0.8379 -2.5982 0.5132 25 1 2.5322 -3.1440 0.5131 26 1 1.0176 -2.3942 -1.9018 27 1 0.2339 -4.4754 -0.9207 28 1 1.9283 -5.0206 -0.9211 29 1 0.0792 -7.8557 -2.3730 30 1 5.0842 -1.9838 0.7233 31 1 5.2673 -1.4862 -0.9858 32 1 5.9559 0.0489 1.5385 33 1 6.7862 0.0494 -0.0509 34 1 5.2446 1.5701 -1.0015 35 1 5.0649 2.0677 0.7079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894084094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:45 Heat of formation + Delta-G solvation = 75.488450 kcal Electronic energy + Delta-G solvation = -16231.576079 eV Core-core repulsion = 13651.969865 eV Total energy + Delta-G solvation = -2579.606214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32046 -36.49857 -35.36028 -32.69932 -31.79535 -30.39205 -27.70316 -26.35304 -26.02329 -24.09447 -21.55623 -21.25286 -19.53360 -18.89751 -16.58363 -15.92748 -15.65284 -15.00398 -14.73235 -14.48995 -14.01835 -13.69415 -13.30424 -12.76998 -12.58144 -12.42552 -12.30266 -11.77249 -11.74821 -11.49190 -11.21509 -11.01980 -10.82618 -10.76838 -10.68905 -10.06687 -9.99893 -9.27003 -8.85223 -8.53948 -7.92716 -7.42882 -6.08854 -4.11071 2.09465 2.63342 2.98418 3.28156 3.35724 3.41155 4.17497 4.39400 4.82760 4.98934 5.05199 5.10034 5.23399 5.27379 5.32515 5.35800 5.46023 5.52020 5.67712 5.81747 5.87003 5.96259 6.03974 6.18536 6.30788 6.35501 6.56305 6.88754 7.10574 7.29561 7.30208 7.70930 7.99523 8.03631 8.25045 8.48239 8.97860 9.54304 11.02219 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031887 B = 0.005362 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.898225 B = 5220.350856 C = 5629.252971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.373 5.373 3 N -0.289 5.289 4 C 0.043 3.957 5 C -0.247 4.247 6 C 0.116 3.884 7 C 0.121 3.879 8 N -0.679 5.679 9 C 0.194 3.806 10 C -0.515 4.515 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.285 1.285 18 C -0.037 4.037 19 C -0.117 4.117 20 C -0.028 4.028 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.090 0.910 26 H 0.328 0.672 27 H -0.012 1.012 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 13.108 6.168 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.156 5.156 3 N -0.111 5.111 4 C -0.123 4.123 5 C -0.259 4.259 6 C -0.010 4.010 7 C -0.010 4.010 8 N -0.310 5.310 9 C 0.068 3.932 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.075 4.075 19 C -0.154 4.154 20 C -0.067 4.067 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.108 0.892 26 H 0.144 0.856 27 H 0.005 0.995 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.185 13.750 6.138 15.925 hybrid contribution -0.863 -1.049 -0.648 1.506 sum 4.322 12.700 5.490 14.495 Atomic orbital electron populations 1.21793 0.74377 1.04493 1.03040 1.48413 1.06153 1.02798 1.58222 1.76963 1.00460 1.07151 1.26523 1.23114 0.93806 0.95394 1.00035 1.20450 0.94399 0.94494 1.16514 1.20355 0.90141 0.90238 1.00290 1.20493 0.99486 0.87441 0.93600 1.60697 1.55424 1.06230 1.08654 1.19611 0.93691 0.82257 0.97640 1.21187 1.44652 0.97472 0.92012 0.91876 1.24979 0.95344 0.96535 0.97619 1.69971 1.46201 1.06119 1.31385 0.86413 0.77581 0.78673 0.84592 1.19643 1.20892 1.21073 1.20293 0.88439 0.97041 1.01738 1.22399 0.97994 0.93874 1.01183 1.20509 0.85761 0.98179 1.02238 0.91070 0.89381 0.89417 0.95302 0.89161 0.85611 0.99457 0.95026 0.92888 0.91495 0.90633 0.91073 0.90324 0.89677 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.29 11.09 59.85 0.66 1.95 16 2 N -0.37 -6.12 4.01 -63.86 -0.26 -6.38 16 3 N -0.29 -5.02 12.58 33.86 0.43 -4.60 16 4 C 0.04 0.69 8.10 -82.02 -0.66 0.03 16 5 C -0.25 -4.11 6.78 -104.72 -0.71 -4.82 16 6 C 0.12 2.02 6.45 -82.24 -0.53 1.49 16 7 C 0.12 2.19 5.70 -4.97 -0.03 2.16 16 8 N -0.68 -14.56 6.48 -116.34 -0.75 -15.31 16 9 C 0.19 4.98 5.44 -4.98 -0.03 4.95 16 10 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.04 -0.50 6.76 -26.89 -0.18 -0.68 16 19 C -0.12 -1.19 7.07 -25.17 -0.18 -1.37 16 20 C -0.03 -0.32 6.78 -26.72 -0.18 -0.50 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.09 1.06 7.66 -51.92 -0.40 0.66 16 24 H 0.03 0.50 7.72 -51.93 -0.40 0.09 16 25 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 26 H 0.33 6.83 8.71 -39.30 -0.34 6.48 16 27 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -32.09 295.92 -8.00 -40.09 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.34 Total: 0.95 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -2.25 Total: -10.02 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.15 Total: -51.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.09 -8.00 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.583 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds