Wall clock time and date at job start Sun Mar 29 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40018 * 126.02999 * 2 1 4 4 C 1.31041 * 108.24534 * 180.02562 * 3 2 1 5 5 C 1.39853 * 108.12799 * 359.73538 * 4 3 2 6 6 C 1.34888 * 126.02978 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.11517 * 359.97438 * 6 2 1 8 8 N 1.46903 * 109.47245 * 90.01795 * 7 6 2 9 9 C 1.46893 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47216 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 119.99848 * 14 12 10 17 17 H 1.48501 * 109.47057 * 239.99829 * 14 12 10 18 18 C 1.51285 * 109.55714 * 180.34534 * 5 4 3 19 19 C 1.54341 * 105.21627 * 17.37604 * 18 5 4 20 20 C 1.51321 * 142.36113 * 180.02562 * 4 3 2 21 21 H 1.08991 * 109.47447 * 269.96622 * 1 2 3 22 22 H 1.09000 * 109.47128 * 29.96650 * 1 2 3 23 23 H 1.09008 * 109.46655 * 149.96247 * 1 2 3 24 24 H 1.08993 * 109.46849 * 330.02118 * 7 6 2 25 25 H 1.09003 * 109.46941 * 210.01444 * 7 6 2 26 26 H 1.00893 * 110.99793 * 303.95739 * 8 7 6 27 27 H 1.09001 * 109.46739 * 60.00281 * 9 8 7 28 28 H 1.09000 * 109.47767 * 300.00540 * 9 8 7 29 29 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 30 30 H 1.08996 * 110.29977 * 136.31363 * 18 5 4 31 31 H 1.09008 * 110.29757 * 258.44424 * 18 5 4 32 32 H 1.09002 * 110.76754 * 91.76228 * 19 18 5 33 33 H 1.08994 * 110.77338 * 214.99151 * 19 18 5 34 34 H 1.08999 * 110.29170 * 281.70051 * 20 4 3 35 35 H 1.08998 * 110.29454 * 43.82486 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2886 1.1323 0.0000 4 6 3.5364 0.7321 -0.0006 5 6 3.5448 -0.6664 0.0052 6 6 2.2584 -1.0909 -0.0005 7 6 1.7964 -2.5253 -0.0006 8 7 1.6461 -2.9913 -1.3856 9 6 1.1965 -4.3891 -1.4249 10 6 1.0534 -4.8308 -2.8586 11 1 1.2748 -4.1420 -3.6604 12 6 0.6399 -6.1141 -3.1467 13 7 0.3698 -6.9527 -2.1702 14 14 0.4632 -6.6617 -4.9239 15 1 0.8243 -5.5388 -5.8261 16 1 1.3662 -7.8125 -5.1794 17 1 -0.9419 -7.0689 -5.1790 18 6 4.9734 -1.1642 0.0133 19 6 5.8217 0.0464 0.4568 20 6 4.9597 1.2460 -0.0005 21 1 -0.3634 -0.0006 1.0276 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5145 24 1 0.8379 -2.5982 0.5132 25 1 2.5322 -3.1440 0.5131 26 1 1.0176 -2.3942 -1.9018 27 1 0.2339 -4.4754 -0.9207 28 1 1.9283 -5.0206 -0.9211 29 1 0.0792 -7.8557 -2.3730 30 1 5.0842 -1.9838 0.7233 31 1 5.2673 -1.4862 -0.9858 32 1 5.9559 0.0489 1.5385 33 1 6.7862 0.0494 -0.0509 34 1 5.2446 1.5701 -1.0015 35 1 5.0649 2.0677 0.7079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894084094.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:45 Heat of formation + Delta-G solvation = 53.918814 kcal Electronic energy + Delta-G solvation = -16232.511408 eV Core-core repulsion = 13651.969865 eV Total energy + Delta-G solvation = -2580.541544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52753 -37.68273 -36.97732 -34.69815 -32.99361 -31.77379 -29.24947 -27.78086 -27.05725 -25.75320 -23.50632 -22.28691 -20.74307 -20.11703 -18.58791 -17.12988 -16.97701 -16.73925 -16.30425 -15.71460 -15.27858 -15.05439 -14.81570 -14.38020 -13.73155 -13.59088 -13.48875 -13.38120 -13.23414 -12.94868 -12.69996 -12.54275 -12.46456 -12.06745 -11.93466 -11.67339 -11.34902 -11.26727 -10.68721 -10.10293 -9.26410 -9.12062 -8.24659 -6.35608 0.80914 1.40746 1.41900 1.50769 1.55402 1.75828 2.39331 3.09242 3.09844 3.48758 3.74495 3.96868 4.00912 4.15161 4.27685 4.31842 4.38899 4.49242 4.57642 4.68014 4.85025 4.93524 5.00655 5.02195 5.18280 5.21875 5.28598 5.32837 5.47420 5.57404 5.74385 5.95692 6.09296 6.33230 6.57406 6.76686 6.82474 7.35271 8.86893 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031887 B = 0.005362 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.898225 B = 5220.350856 C = 5629.252971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.378 5.378 3 N -0.313 5.313 4 C 0.034 3.966 5 C -0.264 4.264 6 C 0.095 3.905 7 C 0.130 3.870 8 N -0.679 5.679 9 C 0.210 3.790 10 C -0.536 4.536 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.971 3.029 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.276 1.276 18 C -0.043 4.043 19 C -0.103 4.103 20 C -0.027 4.027 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.331 0.669 27 H -0.031 1.031 28 H 0.007 0.993 29 H 0.266 0.734 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 14.036 5.631 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.161 5.161 3 N -0.135 5.135 4 C -0.132 4.132 5 C -0.276 4.276 6 C -0.032 4.032 7 C -0.001 4.001 8 N -0.310 5.310 9 C 0.083 3.917 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.796 3.204 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.066 4.066 21 H 0.108 0.892 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.148 0.852 27 H -0.013 1.013 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.028 14.700 5.612 16.850 hybrid contribution -1.134 -1.303 -0.428 1.780 sum 4.893 13.397 5.183 15.176 Atomic orbital electron populations 1.22050 0.72713 1.05143 1.04483 1.48707 1.07242 1.02250 1.57876 1.76890 1.01385 1.07835 1.27347 1.23915 0.94922 0.95487 0.98887 1.21035 0.95363 0.95461 1.15785 1.20278 0.91019 0.89886 1.02026 1.20365 0.99901 0.88228 0.91604 1.60544 1.55029 1.04364 1.11037 1.19246 0.91954 0.84235 0.96263 1.21503 1.45042 0.97972 0.92912 0.92127 1.25881 0.94679 0.96501 1.02217 1.70081 1.46716 1.06606 1.33712 0.85303 0.77861 0.78251 0.78990 1.19008 1.20271 1.20188 1.20446 0.87436 0.98714 1.01504 1.22411 0.98240 0.91241 1.02207 1.20740 0.83072 0.99206 1.03631 0.89236 0.87961 0.89537 0.94323 0.89472 0.85190 1.01313 0.97479 0.92500 0.91448 0.91391 0.89894 0.87575 0.88418 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.32 11.09 127.77 1.42 3.74 16 2 N -0.38 -12.23 4.01 -355.96 -1.43 -13.66 16 3 N -0.31 -10.60 12.58 -46.80 -0.59 -11.19 16 4 C 0.03 1.05 8.10 43.27 0.35 1.40 16 5 C -0.26 -8.64 6.78 -19.93 -0.14 -8.78 16 6 C 0.09 3.29 6.45 41.45 0.27 3.55 16 7 C 0.13 4.76 5.70 85.56 0.49 5.24 16 8 N -0.68 -29.57 6.48 -521.98 -3.38 -32.95 16 9 C 0.21 11.07 5.44 85.56 0.47 11.53 16 10 C -0.54 -30.35 9.32 25.60 0.24 -30.11 16 11 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 14 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 C -0.04 -1.11 6.76 30.49 0.21 -0.90 16 19 C -0.10 -1.82 7.07 31.61 0.22 -1.59 16 20 C -0.03 -0.56 6.78 30.60 0.21 -0.35 16 21 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.09 2.08 7.66 -2.38 -0.02 2.06 16 24 H 0.04 1.34 7.72 -2.39 -0.02 1.32 16 25 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.33 13.98 8.71 -89.70 -0.78 13.19 16 27 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -68.50 295.92 1.40 -67.10 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.30 Total: 15.21 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.19 Total: -15.47 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -5.11 Total: -112.77 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.50 1.40 -67.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894084094.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.017 kcal (2) G-P(sol) polarization free energy of solvation -68.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds