Wall clock time and date at job start Sun Mar 29 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38876 * 120.74883 * 2 1 4 4 C 1.38030 * 119.32877 * 180.25914 * 3 2 1 5 5 N 1.31970 * 120.85494 * 359.78970 * 4 3 2 6 6 C 1.32395 * 121.62402 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70546 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.74575 * 179.80358 * 2 1 3 9 9 C 1.50703 * 120.45011 * 359.97438 * 8 2 1 10 10 N 1.46899 * 109.47107 * 269.72074 * 9 8 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 H 1.08997 * 109.47254 * 270.19640 * 1 2 3 22 22 H 1.08996 * 109.47020 * 30.19859 * 1 2 3 23 23 H 1.09000 * 109.47244 * 150.19834 * 1 2 3 24 24 H 1.08002 * 120.33670 * 0.02723 * 3 2 1 25 25 H 1.07998 * 119.57345 * 179.77612 * 4 3 2 26 26 H 0.96994 * 119.99927 * 180.02562 * 7 6 5 27 27 H 0.96999 * 120.00009 * 0.02562 * 7 6 5 28 28 H 1.09002 * 109.47152 * 149.72161 * 9 8 2 29 29 H 1.09001 * 109.46980 * 29.72261 * 9 8 2 30 30 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 31 31 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 32 32 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 33 33 H 1.09005 * 109.47424 * 300.00229 * 12 11 10 34 34 H 1.09004 * 109.47266 * 59.99979 * 12 11 10 35 35 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1935 0.0000 4 6 3.5969 1.1593 -0.0054 5 7 4.2454 0.0100 -0.0065 6 6 3.6048 -1.1486 -0.0018 7 7 4.3280 -2.3357 -0.0037 8 6 2.2140 -1.1886 0.0041 9 6 1.4879 -2.5092 0.0092 10 7 1.2584 -2.9365 1.3958 11 6 0.5505 -4.2229 1.4400 12 6 0.3297 -4.6337 2.8971 13 6 -0.3959 -5.9537 2.9425 14 1 -0.6716 -6.4502 2.0238 15 6 -0.7079 -6.5275 4.1568 16 7 -0.3718 -5.9233 5.2754 17 14 -1.6068 -8.1642 4.2129 18 1 -0.7938 -9.1992 3.5252 19 1 -1.8224 -8.5622 5.6272 20 1 -2.9193 -8.0317 3.5309 21 1 -0.3633 0.0035 1.0276 22 1 -0.3633 0.8882 -0.5169 23 1 -0.3634 -0.8918 -0.5107 24 1 1.6948 2.1389 0.0004 25 1 4.1530 2.0851 -0.0091 26 1 3.8630 -3.1869 -0.0007 27 1 5.2977 -2.3128 -0.0079 28 1 2.0903 -3.2571 -0.5065 29 1 0.5306 -2.3994 -0.5004 30 1 2.1264 -2.9832 1.9082 31 1 -0.4132 -4.1246 0.9405 32 1 1.1462 -4.9828 0.9341 33 1 1.2933 -4.7318 3.3971 34 1 -0.2660 -3.8736 3.4026 35 1 -0.5909 -6.3271 6.1296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894445216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:34 Heat of formation + Delta-G solvation = 22.629606 kcal Electronic energy + Delta-G solvation = -15997.848426 eV Core-core repulsion = 13415.950080 eV Total energy + Delta-G solvation = -2581.898346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35087 -36.26076 -34.97323 -33.78995 -32.56504 -30.13989 -28.71334 -27.70560 -25.49047 -23.50874 -21.73306 -21.25939 -20.54432 -17.72307 -16.87814 -16.33801 -15.63984 -15.00387 -14.82801 -14.54278 -14.47714 -14.09905 -13.54332 -12.99706 -12.89552 -12.46393 -12.31844 -12.14531 -11.88013 -11.25756 -11.05058 -10.92070 -10.70352 -10.58061 -10.02453 -9.53876 -9.30792 -9.25678 -9.08775 -8.36732 -7.89393 -7.71885 -6.00967 -4.04097 1.34336 1.56244 3.32135 3.36831 3.38817 3.55094 3.95584 4.43151 4.64354 4.84316 4.90224 5.06857 5.15307 5.28315 5.34876 5.56840 5.61765 5.71051 5.76974 5.95370 6.07450 6.18703 6.28377 6.34448 6.59329 6.73942 6.93896 7.26442 7.43409 7.48519 7.69955 7.78677 7.90955 8.06221 8.30108 8.41134 9.03033 9.59829 11.10339 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.004566 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.932883 B = 6130.346566 C = 6389.920455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.018 3.982 3 C -0.238 4.238 4 C 0.143 3.857 5 N -0.554 5.554 6 C 0.411 3.589 7 N -0.853 5.853 8 C -0.196 4.196 9 C 0.106 3.894 10 N -0.683 5.683 11 C 0.065 3.935 12 C 0.026 3.974 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.128 0.872 25 H 0.151 0.849 26 H 0.407 0.593 27 H 0.401 0.599 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.335 0.665 31 H 0.059 0.941 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 11.537 -11.883 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.010 3.990 3 C -0.261 4.261 4 C -0.014 4.014 5 N -0.272 5.272 6 C 0.173 3.827 7 N -0.397 5.397 8 C -0.203 4.203 9 C -0.023 4.023 10 N -0.314 5.314 11 C -0.063 4.063 12 C -0.011 4.011 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.146 0.854 25 H 0.168 0.832 26 H 0.238 0.762 27 H 0.230 0.770 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.150 11.890 -11.623 17.728 hybrid contribution -0.403 -1.819 -0.078 1.864 sum 5.747 10.072 -11.701 16.473 Atomic orbital electron populations 1.20849 0.90326 1.02514 1.03552 1.19922 0.96496 0.91657 0.90962 1.21671 0.95279 0.98306 1.10834 1.22263 0.91669 0.94636 0.92849 1.67146 1.40669 0.97399 1.21990 1.18170 0.87757 0.86703 0.90064 1.42313 1.09422 1.04664 1.83345 1.19972 0.91992 0.96429 1.11899 1.20667 0.98789 0.91107 0.91762 1.60621 1.27143 1.32952 1.10725 1.22199 0.96507 0.86122 1.01467 1.19056 0.97050 0.96018 0.89013 1.21131 1.37425 1.05441 0.92226 0.92812 1.24997 0.95945 0.97608 0.95723 1.69957 1.46954 1.38910 0.97367 0.86651 0.80291 0.84055 0.76944 1.20303 1.21256 1.20207 0.89708 0.91731 0.90834 0.85424 0.83169 0.76156 0.76973 0.95742 0.90059 0.84722 0.92225 0.96703 0.96899 0.95628 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.67 36.00 0.35 -0.98 16 2 C 0.02 0.24 5.91 -104.36 -0.62 -0.38 16 3 C -0.24 -2.80 9.81 -39.42 -0.39 -3.19 16 4 C 0.14 1.73 11.17 -17.57 -0.20 1.53 16 5 N -0.55 -7.85 10.39 -12.44 -0.13 -7.98 16 6 C 0.41 5.78 7.73 -155.02 -1.20 4.58 16 7 N -0.85 -9.90 8.98 31.13 0.28 -9.62 16 8 C -0.20 -2.77 5.43 -104.26 -0.57 -3.33 16 9 C 0.11 1.53 5.01 -4.98 -0.02 1.51 16 10 N -0.68 -11.97 6.49 -115.05 -0.75 -12.72 16 11 C 0.06 1.33 5.62 -3.82 -0.02 1.31 16 12 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 13 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 23 H 0.07 0.85 6.07 -51.93 -0.32 0.53 16 24 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 25 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 26 H 0.41 4.45 6.81 -40.82 -0.28 4.17 16 27 H 0.40 4.04 8.95 -40.82 -0.37 3.67 16 28 H 0.02 0.33 6.57 -51.93 -0.34 -0.01 16 29 H 0.08 1.14 6.06 -51.93 -0.31 0.83 16 30 H 0.34 5.94 8.72 -39.29 -0.34 5.59 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -31.34 294.34 -8.54 -39.89 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.88 Total: 7.53 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.22 Total: -11.90 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.14 Total: -56.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.34 -8.54 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894445216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.517 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds