Wall clock time and date at job start Sun Mar 29 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38876 * 120.74883 * 2 1 4 4 C 1.38030 * 119.32877 * 180.25914 * 3 2 1 5 5 N 1.31970 * 120.85494 * 359.78970 * 4 3 2 6 6 C 1.32395 * 121.62402 * 359.97438 * 5 4 3 7 7 N 1.39002 * 119.70546 * 179.97438 * 6 5 4 8 8 C 1.38305 * 120.74575 * 179.80358 * 2 1 3 9 9 C 1.50703 * 120.45011 * 359.97438 * 8 2 1 10 10 N 1.46899 * 109.47107 * 269.72074 * 9 8 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31504 * 120.00303 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99645 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47069 * 60.00160 * 17 15 13 19 19 H 1.48500 * 109.46785 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47146 * 299.99864 * 17 15 13 21 21 H 1.08997 * 109.47254 * 270.19640 * 1 2 3 22 22 H 1.08996 * 109.47020 * 30.19859 * 1 2 3 23 23 H 1.09000 * 109.47244 * 150.19834 * 1 2 3 24 24 H 1.08002 * 120.33670 * 0.02723 * 3 2 1 25 25 H 1.07998 * 119.57345 * 179.77612 * 4 3 2 26 26 H 0.96994 * 119.99927 * 180.02562 * 7 6 5 27 27 H 0.96999 * 120.00009 * 0.02562 * 7 6 5 28 28 H 1.09002 * 109.47152 * 149.72161 * 9 8 2 29 29 H 1.09001 * 109.46980 * 29.72261 * 9 8 2 30 30 H 1.00902 * 111.00582 * 303.95889 * 10 9 8 31 31 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 32 32 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 33 33 H 1.09005 * 109.47424 * 300.00229 * 12 11 10 34 34 H 1.09004 * 109.47266 * 59.99979 * 12 11 10 35 35 H 0.96998 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1935 0.0000 4 6 3.5969 1.1593 -0.0054 5 7 4.2454 0.0100 -0.0065 6 6 3.6048 -1.1486 -0.0018 7 7 4.3280 -2.3357 -0.0037 8 6 2.2140 -1.1886 0.0041 9 6 1.4879 -2.5092 0.0092 10 7 1.2584 -2.9365 1.3958 11 6 0.5505 -4.2229 1.4400 12 6 0.3297 -4.6337 2.8971 13 6 -0.3959 -5.9537 2.9425 14 1 -0.6716 -6.4502 2.0238 15 6 -0.7079 -6.5275 4.1568 16 7 -0.3718 -5.9233 5.2754 17 14 -1.6068 -8.1642 4.2129 18 1 -0.7938 -9.1992 3.5252 19 1 -1.8224 -8.5622 5.6272 20 1 -2.9193 -8.0317 3.5309 21 1 -0.3633 0.0035 1.0276 22 1 -0.3633 0.8882 -0.5169 23 1 -0.3634 -0.8918 -0.5107 24 1 1.6948 2.1389 0.0004 25 1 4.1530 2.0851 -0.0091 26 1 3.8630 -3.1869 -0.0007 27 1 5.2977 -2.3128 -0.0079 28 1 2.0903 -3.2571 -0.5065 29 1 0.5306 -2.3994 -0.5004 30 1 2.1264 -2.9832 1.9082 31 1 -0.4132 -4.1246 0.9405 32 1 1.1462 -4.9828 0.9341 33 1 1.2933 -4.7318 3.3971 34 1 -0.2660 -3.8736 3.4026 35 1 -0.5909 -6.3271 6.1296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894445216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:33 Heat of formation + Delta-G solvation = 0.619073 kcal Electronic energy + Delta-G solvation = -15998.802874 eV Core-core repulsion = 13415.950080 eV Total energy + Delta-G solvation = -2582.852794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33400 -37.66579 -35.92582 -35.40757 -34.18959 -31.64396 -30.00464 -28.75034 -26.97538 -25.17525 -22.72234 -22.49021 -22.21237 -18.70411 -18.49621 -17.82356 -16.96140 -16.41635 -16.04245 -15.97231 -15.71912 -15.17610 -14.88885 -14.47550 -14.10461 -13.90336 -13.54881 -13.40652 -13.21773 -12.89712 -12.77170 -12.44838 -12.19469 -11.90134 -11.62993 -11.42132 -11.31490 -10.55774 -10.32590 -10.21691 -9.28224 -8.71063 -8.19559 -6.31458 0.35308 0.59071 1.41117 1.44187 1.52126 2.41026 2.63025 2.94750 3.14021 3.52845 3.70148 3.95162 4.04776 4.10875 4.29666 4.53702 4.56146 4.66365 4.72288 4.79804 4.83532 4.96086 5.07327 5.12358 5.29101 5.44741 5.62700 5.67580 5.78315 5.82727 6.12464 6.25909 6.33561 6.46805 6.59364 6.86168 7.34908 7.38168 8.92312 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.004566 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.932883 B = 6130.346566 C = 6389.920455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.006 3.994 3 C -0.238 4.238 4 C 0.137 3.863 5 N -0.574 5.574 6 C 0.397 3.603 7 N -0.847 5.847 8 C -0.216 4.216 9 C 0.113 3.887 10 N -0.687 5.687 11 C 0.084 3.916 12 C 0.032 3.968 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.266 1.266 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.156 0.844 25 H 0.181 0.819 26 H 0.409 0.591 27 H 0.408 0.592 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.333 0.667 31 H 0.062 0.938 32 H 0.023 0.977 33 H -0.012 1.012 34 H -0.008 1.008 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 11.690 -13.139 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.002 4.002 3 C -0.261 4.261 4 C -0.019 4.019 5 N -0.293 5.293 6 C 0.159 3.841 7 N -0.392 5.392 8 C -0.224 4.224 9 C -0.016 4.016 10 N -0.318 5.318 11 C -0.045 4.045 12 C -0.005 4.005 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.191 1.191 21 H 0.091 0.909 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.173 0.827 25 H 0.198 0.802 26 H 0.241 0.759 27 H 0.238 0.762 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.006 0.994 34 H 0.011 0.989 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.861 12.044 -12.904 18.599 hybrid contribution -0.263 -1.757 0.309 1.803 sum 5.598 10.287 -12.596 17.199 Atomic orbital electron populations 1.20850 0.89421 1.03637 1.03039 1.20254 0.97377 0.91971 0.90590 1.21988 0.95324 0.98965 1.09804 1.22866 0.92335 0.95148 0.91569 1.67215 1.41294 0.97976 1.22854 1.18390 0.88052 0.87339 0.90319 1.42287 1.09768 1.04255 1.82878 1.19984 0.92210 0.96474 1.13690 1.20632 0.99454 0.91794 0.89726 1.60527 1.27089 1.31119 1.13060 1.21812 0.97300 0.87760 0.97595 1.18908 0.94847 0.94687 0.92072 1.21594 1.37547 1.06360 0.92771 0.91913 1.25975 0.96744 1.01717 0.95258 1.70103 1.48249 1.40886 0.98056 0.85483 0.79226 0.79090 0.77127 1.19083 1.20980 1.19083 0.90907 0.89233 0.91163 0.82683 0.80161 0.75902 0.76221 0.94542 0.89569 0.84987 0.91945 0.95855 0.99371 0.98920 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.67 71.24 0.69 -1.74 16 2 C 0.01 0.16 5.91 -19.70 -0.12 0.04 16 3 C -0.24 -5.08 9.81 22.37 0.22 -4.86 16 4 C 0.14 3.05 11.17 84.62 0.95 3.99 16 5 N -0.57 -15.58 10.39 -193.26 -2.01 -17.59 16 6 C 0.40 10.84 7.73 133.06 1.03 11.87 16 7 N -0.85 -19.14 8.98 -55.44 -0.50 -19.64 16 8 C -0.22 -5.92 5.43 -19.63 -0.11 -6.03 16 9 C 0.11 3.16 5.01 85.56 0.43 3.59 16 10 N -0.69 -24.03 6.49 -517.92 -3.36 -27.39 16 11 C 0.08 3.42 5.62 86.30 0.49 3.91 16 12 C 0.03 1.72 5.23 29.85 0.16 1.87 16 13 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 17 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.09 1.43 8.10 -2.39 -0.02 1.42 16 23 H 0.07 1.54 6.07 -2.39 -0.01 1.52 16 24 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 25 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 26 H 0.41 8.69 6.81 -92.71 -0.63 8.06 16 27 H 0.41 7.96 8.95 -92.71 -0.83 7.13 16 28 H 0.04 0.94 6.57 -2.39 -0.02 0.92 16 29 H 0.09 2.32 6.06 -2.39 -0.01 2.31 16 30 H 0.33 11.92 8.72 -89.69 -0.78 11.13 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.24 294.34 -0.25 -67.49 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -1.12 Total: 25.48 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.43 Total: -17.43 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -5.58 Total: -121.54 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.24 -0.25 -67.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894445216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.110 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds