Wall clock time and date at job start Sun Mar 29 2020 22:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47277 * 2 1 4 4 C 1.35968 * 126.07028 * 124.99485 * 3 2 1 5 5 C 1.35706 * 107.55128 * 180.02562 * 4 3 2 6 6 N 1.40799 * 126.06447 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99563 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46822 * 186.35261 * 7 6 5 9 9 C 1.50697 * 115.54909 * 39.99149 * 8 7 6 10 10 H 1.08005 * 119.99822 * 260.44292 * 9 8 7 11 11 C 1.37875 * 120.00461 * 80.44831 * 9 8 7 12 12 N 1.31519 * 119.99494 * 354.23960 * 11 9 8 13 13 Si 1.86793 * 120.00229 * 174.24297 * 11 9 8 14 14 H 1.48497 * 109.47412 * 59.99810 * 13 11 9 15 15 H 1.48499 * 109.47276 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47294 * 299.99682 * 13 11 9 17 17 C 1.53000 * 117.49555 * 185.65777 * 8 7 6 18 18 C 1.52997 * 60.03082 * 107.47794 * 17 8 7 19 19 C 1.40220 * 107.86636 * 0.23436 * 5 4 3 20 20 N 1.30871 * 108.36003 * 359.61368 * 19 5 4 21 21 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46881 * 299.99716 * 1 2 3 23 23 H 1.09001 * 109.47098 * 59.99522 * 1 2 3 24 24 H 1.08994 * 109.47048 * 239.99844 * 2 1 3 25 25 H 1.08999 * 109.46915 * 119.99967 * 2 1 3 26 26 H 1.08005 * 126.22334 * 0.02562 * 4 3 2 27 27 H 0.97000 * 120.00467 * 0.02562 * 6 5 4 28 28 H 1.08996 * 109.47154 * 66.35693 * 7 6 5 29 29 H 1.08993 * 109.47299 * 306.35134 * 7 6 5 30 30 H 0.97006 * 119.99681 * 185.03403 * 12 11 9 31 31 H 1.08999 * 117.49530 * 214.97815 * 17 8 7 32 32 H 1.09000 * 117.49960 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49930 * 107.50312 * 18 17 8 34 34 H 1.09001 * 117.50324 * 252.51897 * 18 17 8 35 35 H 1.07994 * 125.81918 * 179.74435 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8795 1.9259 0.9003 5 6 3.0749 3.2216 0.5476 6 7 3.8981 4.1476 1.2164 7 6 4.0117 5.5205 0.7177 8 6 5.0782 6.2681 1.5206 9 6 6.3121 5.4727 1.8608 10 1 6.4175 5.0325 2.8415 11 6 7.3066 5.3069 0.9204 12 7 7.1302 5.7446 -0.3072 13 14 8.9042 4.4605 1.3897 14 1 8.6153 3.0797 1.8534 15 1 9.8020 4.4075 0.2080 16 1 9.5654 5.2209 2.4805 17 6 5.2555 7.7617 1.2405 18 6 4.5980 7.3012 2.5430 19 6 2.3070 3.4762 -0.5977 20 7 1.6805 2.3754 -0.9270 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3266 1.4194 1.7430 27 1 4.3899 3.8767 2.0073 28 1 3.0529 6.0273 0.8270 29 1 4.2953 5.5025 -0.3346 30 1 7.7980 5.5640 -0.9872 31 1 6.2645 8.1691 1.3027 32 1 4.6127 8.2117 0.4839 33 1 5.1745 7.4057 3.4621 34 1 3.5226 7.4478 2.6432 35 1 2.2450 4.4193 -1.1203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902071261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:33 Heat of formation + Delta-G solvation = 103.143112 kcal Electronic energy + Delta-G solvation = -16301.957664 eV Core-core repulsion = 13723.550646 eV Total energy + Delta-G solvation = -2578.407018 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43361 -36.91823 -34.59522 -32.95690 -31.94881 -29.75035 -27.99106 -25.51845 -24.33985 -23.52199 -21.11421 -20.51971 -19.62015 -18.96138 -16.70433 -15.99917 -15.15504 -15.01330 -14.57846 -14.11411 -13.85150 -13.56601 -13.16042 -12.86729 -12.59621 -12.09715 -11.97608 -11.71760 -11.50270 -11.33542 -10.96416 -10.88620 -10.51934 -10.22502 -10.18683 -9.50151 -9.28970 -8.86062 -8.79985 -8.44512 -8.06057 -6.17373 -6.02458 -4.10261 2.41456 2.95559 3.29252 3.35041 3.36620 3.65255 4.38390 4.56468 4.85429 5.03279 5.19926 5.27489 5.37083 5.40444 5.56455 5.65211 5.81607 6.04629 6.10775 6.22311 6.36681 6.38236 6.59657 6.62798 6.75578 6.92038 7.07376 7.14092 7.45178 7.48220 7.58567 7.85808 8.20819 8.35083 8.56019 8.89399 9.02793 9.55775 11.05008 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026866 B = 0.006512 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.973318 B = 4298.493576 C = 4901.583939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.380 5.380 4 C -0.066 4.066 5 C 0.094 3.906 6 N -0.716 5.716 7 C 0.182 3.818 8 C 0.035 3.965 9 C -0.496 4.496 10 H 0.058 0.942 11 C 0.078 3.922 12 N -0.873 5.873 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.159 4.159 18 C -0.211 4.211 19 C 0.004 3.996 20 N -0.285 5.285 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.401 0.599 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.001 -7.710 1.524 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 N -0.171 5.171 4 C -0.212 4.212 5 C -0.016 4.016 6 N -0.351 5.351 7 C 0.057 3.943 8 C 0.034 3.966 9 C -0.534 4.534 10 H 0.076 0.924 11 C -0.126 4.126 12 N -0.509 5.509 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.197 4.197 18 C -0.249 4.249 19 C -0.184 4.184 20 N -0.108 5.108 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.179 0.821 27 H 0.236 0.764 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.713 -8.122 0.436 12.669 hybrid contribution 1.816 -0.134 0.992 2.073 sum -7.898 -8.256 1.428 11.514 Atomic orbital electron populations 1.22065 0.94631 1.02100 1.03408 1.21394 0.95222 0.78311 1.02886 1.48008 1.37823 1.09210 1.22045 1.21475 1.04392 0.94436 1.00912 1.17930 0.97927 0.90120 0.95665 1.43978 1.50282 1.08783 1.32016 1.20613 0.94569 0.81012 0.98127 1.19018 0.94616 0.87785 0.95158 1.20221 1.00349 1.33825 0.98971 0.92427 1.24924 0.97846 0.94812 0.95024 1.69953 1.35231 1.44308 1.01420 0.86738 0.83788 0.80000 0.77898 1.20314 1.21378 1.20282 1.22532 0.99781 1.00802 0.96568 1.23052 0.97647 1.10011 0.94147 1.23478 0.99413 0.97771 0.97767 1.76987 1.23470 0.96560 1.13804 0.91372 0.92252 0.91317 0.90766 0.89329 0.82073 0.76357 0.96490 0.92671 0.92958 0.90166 0.91799 0.90609 0.91627 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.10 37.16 0.38 -1.24 16 2 C 0.14 1.61 7.24 -4.04 -0.03 1.58 16 3 N -0.38 -6.08 3.71 -61.00 -0.23 -6.31 16 4 C -0.07 -1.12 11.52 -16.62 -0.19 -1.31 16 5 C 0.09 1.83 6.96 -83.90 -0.58 1.24 16 6 N -0.72 -14.94 5.52 -58.80 -0.32 -15.26 16 7 C 0.18 4.02 5.71 -4.04 -0.02 4.00 16 8 C 0.03 0.83 1.63 -155.62 -0.25 0.57 16 9 C -0.50 -12.81 7.51 -34.44 -0.26 -13.07 16 10 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 11 C 0.08 2.08 5.42 -17.82 -0.10 1.98 16 12 N -0.87 -24.28 13.11 55.43 0.73 -23.55 16 13 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 C -0.16 -3.62 9.71 -26.73 -0.26 -3.88 16 18 C -0.21 -4.48 9.89 -26.70 -0.26 -4.74 16 19 C 0.00 0.08 11.33 -17.22 -0.20 -0.11 16 20 N -0.28 -5.18 12.41 30.70 0.38 -4.80 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 26 H 0.16 2.32 8.06 -52.48 -0.42 1.90 16 27 H 0.40 8.43 7.72 -40.82 -0.32 8.11 16 28 H 0.02 0.35 7.95 -51.93 -0.41 -0.06 16 29 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 30 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 31 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 35 H 0.18 3.04 7.90 -52.49 -0.41 2.62 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -28.95 301.68 -7.03 -35.98 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.33 Total: 8.60 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.78 Total: -14.98 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.56 Total: -49.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.95 -7.03 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902071261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.120 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds