Wall clock time and date at job start Sun Mar 29 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47277 * 2 1 4 4 C 1.35968 * 126.07028 * 124.99485 * 3 2 1 5 5 C 1.35706 * 107.55128 * 180.02562 * 4 3 2 6 6 N 1.40799 * 126.06447 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99563 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46822 * 186.35261 * 7 6 5 9 9 C 1.50697 * 115.54909 * 39.99149 * 8 7 6 10 10 H 1.08005 * 119.99822 * 260.44292 * 9 8 7 11 11 C 1.37875 * 120.00461 * 80.44831 * 9 8 7 12 12 N 1.31519 * 119.99494 * 354.23960 * 11 9 8 13 13 Si 1.86793 * 120.00229 * 174.24297 * 11 9 8 14 14 H 1.48497 * 109.47412 * 59.99810 * 13 11 9 15 15 H 1.48499 * 109.47276 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47294 * 299.99682 * 13 11 9 17 17 C 1.53000 * 117.49555 * 185.65777 * 8 7 6 18 18 C 1.52997 * 60.03082 * 107.47794 * 17 8 7 19 19 C 1.40220 * 107.86636 * 0.23436 * 5 4 3 20 20 N 1.30871 * 108.36003 * 359.61368 * 19 5 4 21 21 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46881 * 299.99716 * 1 2 3 23 23 H 1.09001 * 109.47098 * 59.99522 * 1 2 3 24 24 H 1.08994 * 109.47048 * 239.99844 * 2 1 3 25 25 H 1.08999 * 109.46915 * 119.99967 * 2 1 3 26 26 H 1.08005 * 126.22334 * 0.02562 * 4 3 2 27 27 H 0.97000 * 120.00467 * 0.02562 * 6 5 4 28 28 H 1.08996 * 109.47154 * 66.35693 * 7 6 5 29 29 H 1.08993 * 109.47299 * 306.35134 * 7 6 5 30 30 H 0.97006 * 119.99681 * 185.03403 * 12 11 9 31 31 H 1.08999 * 117.49530 * 214.97815 * 17 8 7 32 32 H 1.09000 * 117.49960 * 359.97438 * 17 8 7 33 33 H 1.09000 * 117.49930 * 107.50312 * 18 17 8 34 34 H 1.09001 * 117.50324 * 252.51897 * 18 17 8 35 35 H 1.07994 * 125.81918 * 179.74435 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8795 1.9259 0.9003 5 6 3.0749 3.2216 0.5476 6 7 3.8981 4.1476 1.2164 7 6 4.0117 5.5205 0.7177 8 6 5.0782 6.2681 1.5206 9 6 6.3121 5.4727 1.8608 10 1 6.4175 5.0325 2.8415 11 6 7.3066 5.3069 0.9204 12 7 7.1302 5.7446 -0.3072 13 14 8.9042 4.4605 1.3897 14 1 8.6153 3.0797 1.8534 15 1 9.8020 4.4075 0.2080 16 1 9.5654 5.2209 2.4805 17 6 5.2555 7.7617 1.2405 18 6 4.5980 7.3012 2.5430 19 6 2.3070 3.4762 -0.5977 20 7 1.6805 2.3754 -0.9270 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3266 1.4194 1.7430 27 1 4.3899 3.8767 2.0073 28 1 3.0529 6.0273 0.8270 29 1 4.2953 5.5025 -0.3346 30 1 7.7980 5.5640 -0.9872 31 1 6.2645 8.1691 1.3027 32 1 4.6127 8.2117 0.4839 33 1 5.1745 7.4057 3.4621 34 1 3.5226 7.4478 2.6432 35 1 2.2450 4.4193 -1.1203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902071261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:32 Heat of formation + Delta-G solvation = 86.253502 kcal Electronic energy + Delta-G solvation = -16302.690053 eV Core-core repulsion = 13723.550646 eV Total energy + Delta-G solvation = -2579.139407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.78640 -38.68334 -35.89096 -34.27942 -33.94691 -31.01068 -29.38124 -27.47385 -25.97418 -24.58811 -22.87825 -21.86491 -21.10152 -20.65348 -18.03276 -17.85673 -16.71513 -16.37860 -16.20999 -15.68787 -15.24285 -14.90487 -14.64708 -14.43817 -14.10097 -13.43009 -13.30111 -13.06289 -12.87163 -12.86371 -12.77454 -12.39014 -12.26112 -11.98857 -11.51960 -11.32008 -10.90367 -10.66469 -10.39064 -10.12451 -9.86285 -8.05283 -7.66198 -6.15339 1.06505 1.43574 1.45114 1.50906 1.78820 2.19796 2.45205 3.05677 3.27841 3.58283 3.86518 4.15320 4.19706 4.30790 4.37609 4.47912 4.61967 4.72202 4.76115 4.87659 4.89594 4.96249 5.04955 5.05389 5.16390 5.29373 5.32654 5.58106 5.67019 5.70092 5.83276 6.35272 6.41678 6.80493 6.88209 6.99216 7.45717 7.52818 9.02795 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026866 B = 0.006512 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.973318 B = 4298.493576 C = 4901.583939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 N -0.372 5.372 4 C -0.047 4.047 5 C 0.058 3.942 6 N -0.722 5.722 7 C 0.199 3.801 8 C 0.008 3.992 9 C -0.497 4.497 10 H 0.056 0.944 11 C 0.033 3.967 12 N -0.904 5.904 13 Si 0.943 3.057 14 H -0.272 1.272 15 H -0.293 1.293 16 H -0.273 1.273 17 C -0.166 4.166 18 C -0.185 4.185 19 C -0.014 4.014 20 N -0.301 5.301 21 H 0.101 0.899 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.191 0.809 27 H 0.398 0.602 28 H 0.029 0.971 29 H 0.022 0.978 30 H 0.256 0.744 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -9.436 2.749 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 N -0.162 5.162 4 C -0.196 4.196 5 C -0.051 4.051 6 N -0.358 5.358 7 C 0.073 3.927 8 C 0.007 3.993 9 C -0.535 4.535 10 H 0.074 0.926 11 C -0.168 4.168 12 N -0.542 5.542 13 Si 0.770 3.230 14 H -0.197 1.197 15 H -0.219 1.219 16 H -0.199 1.199 17 C -0.204 4.204 18 C -0.222 4.222 19 C -0.201 4.201 20 N -0.126 5.126 21 H 0.119 0.881 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.208 0.792 27 H 0.233 0.767 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.401 -9.880 1.660 14.442 hybrid contribution 1.948 0.292 0.636 2.070 sum -8.453 -9.589 2.296 12.987 Atomic orbital electron populations 1.22014 0.93545 1.03857 1.02065 1.21923 0.96193 0.75949 1.05017 1.48546 1.36602 1.10338 1.20715 1.21967 1.02975 0.93708 1.00904 1.18188 0.99162 0.91108 0.96644 1.43775 1.51211 1.08565 1.32244 1.20291 0.94418 0.81994 0.95961 1.19158 0.94856 0.88124 0.97113 1.20478 1.01064 1.33298 0.98621 0.92589 1.25559 1.00485 0.95757 0.95004 1.70080 1.35936 1.45951 1.02200 0.85860 0.80532 0.79329 0.77329 1.19680 1.21891 1.19850 1.22465 0.99202 1.00434 0.98314 1.23046 0.98916 1.07011 0.93193 1.23561 1.00049 0.98309 0.98160 1.76953 1.23938 0.96948 1.14737 0.88065 0.92987 0.93212 0.89674 0.86161 0.79198 0.76671 0.95301 0.95949 0.93489 0.92255 0.90787 0.90319 0.89240 0.80833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.10 71.98 0.73 -1.95 16 2 C 0.13 2.48 7.24 86.38 0.63 3.10 16 3 N -0.37 -11.14 3.71 -346.90 -1.29 -12.43 16 4 C -0.05 -1.52 11.52 83.46 0.96 -0.55 16 5 C 0.06 2.22 6.96 37.59 0.26 2.49 16 6 N -0.72 -29.96 5.52 -339.93 -1.88 -31.84 16 7 C 0.20 8.86 5.71 86.38 0.49 9.36 16 8 C 0.01 0.38 1.63 -52.90 -0.09 0.30 16 9 C -0.50 -25.58 7.51 25.60 0.19 -25.39 16 10 H 0.06 2.84 7.82 -2.91 -0.02 2.81 16 11 C 0.03 1.75 5.42 84.65 0.46 2.21 16 12 N -0.90 -51.18 13.11 21.45 0.28 -50.90 16 13 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 C -0.17 -7.55 9.71 30.59 0.30 -7.26 16 18 C -0.18 -7.54 9.89 30.62 0.30 -7.24 16 19 C -0.01 -0.52 11.33 85.32 0.97 0.45 16 20 N -0.30 -10.76 12.41 -56.78 -0.70 -11.46 16 21 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.12 1.59 8.07 -2.39 -0.02 1.57 16 26 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.40 16.52 7.72 -92.71 -0.72 15.81 16 28 H 0.03 1.20 7.95 -2.39 -0.02 1.18 16 29 H 0.02 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.26 14.14 8.32 -92.70 -0.77 13.37 16 31 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 3.23 8.09 -2.39 -0.02 3.21 16 35 H 0.17 6.30 7.90 -2.91 -0.02 6.28 16 Total: -1.00 -61.84 301.68 3.99 -57.85 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.35 Total: 28.56 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.20 Total: -24.49 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.59 Total: -106.63 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -61.84 3.99 -57.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902071261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.105 kcal (2) G-P(sol) polarization free energy of solvation -61.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds