Wall clock time and date at job start Sun Mar 29 2020 22:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00060 * 2 1 4 4 C 1.39171 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.39495 * 120.86464 * 179.72476 * 4 2 1 6 6 C 1.37883 * 119.06421 * 179.75515 * 5 4 2 7 7 N 1.32013 * 120.84149 * 0.52683 * 6 5 4 8 8 C 1.31980 * 121.91172 * 359.72509 * 7 6 5 9 9 C 1.50697 * 119.57642 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47221 * 275.02085 * 9 8 7 11 11 C 1.46907 * 110.99993 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47073 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00216 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46998 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47316 * 119.99768 * 16 14 12 19 19 H 1.48502 * 109.47266 * 240.00252 * 16 14 12 20 20 C 1.37908 * 120.84346 * 0.02562 * 8 7 6 21 21 H 1.09002 * 109.47391 * 240.00370 * 1 2 3 22 22 H 1.09001 * 109.46813 * 120.00427 * 1 2 3 23 23 H 1.09004 * 109.47041 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47655 * 90.00107 * 3 2 1 25 25 H 1.09006 * 109.46899 * 210.00007 * 3 2 1 26 26 H 1.08997 * 109.46879 * 329.99184 * 3 2 1 27 27 H 1.07995 * 120.46916 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.57543 * 180.25001 * 6 5 4 29 29 H 1.09005 * 109.47272 * 35.02531 * 9 8 7 30 30 H 1.08999 * 109.47071 * 155.01530 * 9 8 7 31 31 H 1.00904 * 110.99761 * 303.95440 * 10 9 8 32 32 H 1.09003 * 109.46887 * 299.99989 * 11 10 9 33 33 H 1.08999 * 109.46776 * 59.99837 * 11 10 9 34 34 H 0.96997 * 120.00132 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.47077 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5556 -1.2263 -0.0052 6 6 4.2072 -2.4414 0.0007 7 7 3.5281 -3.5735 0.0012 8 6 2.2085 -3.5955 0.0015 9 6 1.4866 -4.9183 0.0015 10 7 1.3581 -5.4060 -1.3781 11 6 0.6571 -6.6965 -1.4172 12 6 0.5440 -7.1636 -2.8455 13 1 0.9517 -6.5619 -3.6444 14 6 -0.0809 -8.3586 -3.1325 15 7 -0.5777 -9.0911 -2.1597 16 14 -0.2218 -8.9374 -4.9030 17 1 0.4121 -7.9395 -5.8019 18 1 0.4650 -10.2455 -5.0523 19 1 -1.6549 -9.0867 -5.2624 20 6 1.4819 -2.4234 0.0008 21 1 -0.3634 -0.5138 0.8900 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 2.3792 1.5834 1.0276 25 1 3.1500 1.1383 -0.5139 26 1 1.6085 2.0283 -0.5139 27 1 4.1172 -0.3039 -0.0106 28 1 5.2869 -2.4674 0.0004 29 1 2.0515 -5.6405 0.5911 30 1 0.4951 -4.7911 0.4358 31 1 0.8943 -4.7251 -1.9606 32 1 1.2159 -7.4312 -0.8374 33 1 -0.3402 -6.5811 -0.9929 34 1 -1.0170 -9.9320 -2.3616 35 1 0.4021 -2.4484 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905524285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:05 Heat of formation + Delta-G solvation = 43.878412 kcal Electronic energy + Delta-G solvation = -15826.530812 eV Core-core repulsion = 13245.553884 eV Total energy + Delta-G solvation = -2580.976928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13302 -37.09446 -35.20170 -32.63789 -31.07334 -31.02343 -28.66685 -27.03236 -25.42546 -24.25274 -22.40434 -21.37505 -20.36994 -17.36283 -16.61931 -16.27282 -15.35738 -15.28115 -14.74631 -14.56023 -14.22215 -13.95098 -13.69393 -13.23234 -12.90126 -12.66911 -12.61554 -12.36152 -11.99615 -11.39919 -11.27271 -11.01599 -10.67808 -10.61211 -10.45383 -9.92777 -9.17736 -9.00021 -8.76001 -8.43719 -7.69602 -7.22420 -5.98798 -4.00190 1.41908 1.74766 2.89707 3.34616 3.41643 3.47490 4.12172 4.48225 4.65925 4.72170 4.75848 5.03356 5.08215 5.16906 5.33076 5.36218 5.37279 5.44694 5.51535 5.56742 5.69418 5.88009 5.99420 6.09280 6.18261 6.45245 6.83175 7.02887 7.27311 7.30268 7.45979 7.83358 8.16675 8.44041 8.50847 8.65806 9.09166 9.64395 11.12462 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.004546 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.306596 B = 6157.369352 C = 6424.458696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.632 5.632 3 C 0.093 3.907 4 C 0.245 3.755 5 C -0.262 4.262 6 C 0.138 3.862 7 N -0.504 5.504 8 C 0.187 3.813 9 C 0.105 3.895 10 N -0.677 5.677 11 C 0.194 3.806 12 C -0.511 4.511 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.243 4.243 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.327 0.673 32 H 0.031 0.969 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 20.644 6.006 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.345 5.345 3 C -0.050 4.050 4 C 0.135 3.865 5 C -0.287 4.287 6 C -0.020 4.020 7 N -0.216 5.216 8 C 0.049 3.951 9 C -0.025 4.025 10 N -0.308 5.308 11 C 0.067 3.933 12 C -0.550 4.550 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.269 4.269 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.144 0.856 32 H 0.049 0.951 33 H 0.005 0.995 34 H 0.070 0.930 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.489 19.552 6.033 20.949 hybrid contribution -1.541 0.817 -0.729 1.890 sum 2.948 20.369 5.305 21.254 Atomic orbital electron populations 1.21651 0.79132 1.02386 1.01774 1.46224 1.05243 1.03095 1.79900 1.21670 0.97429 0.84743 1.01136 1.17983 0.91339 0.85802 0.91356 1.21566 0.92614 1.00070 1.14433 1.22490 0.99901 0.87075 0.92494 1.67609 1.08552 1.29742 1.15732 1.21136 0.89465 0.94473 0.89996 1.20803 0.96452 0.91329 0.93904 1.60641 1.57727 1.06648 1.05799 1.19602 0.91046 0.84982 0.97623 1.21220 1.35944 1.05257 0.92570 0.91905 1.24981 0.95534 0.96571 0.97501 1.69973 1.38747 1.13648 1.31451 0.86426 0.77505 0.78673 0.84711 1.19668 1.20965 1.21148 1.21464 1.00862 0.91389 1.13141 0.92548 0.92356 0.90857 0.93378 0.91191 0.91495 0.85544 0.83258 0.89856 0.94840 0.85649 0.95091 0.99503 0.92995 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 9.44 59.85 0.56 1.37 16 2 N -0.63 -6.66 3.39 -187.34 -0.64 -7.30 16 3 C 0.09 0.69 10.19 59.85 0.61 1.30 16 4 C 0.24 3.28 6.58 -83.60 -0.55 2.73 16 5 C -0.26 -3.32 9.27 -39.24 -0.36 -3.68 16 6 C 0.14 1.97 11.17 -17.60 -0.20 1.78 16 7 N -0.50 -9.09 10.27 -9.57 -0.10 -9.19 16 8 C 0.19 3.32 6.29 -82.65 -0.52 2.80 16 9 C 0.11 2.06 5.99 -4.98 -0.03 2.03 16 10 N -0.68 -15.62 6.48 -116.34 -0.75 -16.37 16 11 C 0.19 5.26 5.44 -4.97 -0.03 5.24 16 12 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 13 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 16 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.24 -3.70 8.99 -39.25 -0.35 -4.05 16 21 H 0.06 0.48 7.99 -51.93 -0.42 0.07 16 22 H 0.06 0.53 7.99 -51.93 -0.42 0.12 16 23 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.49 6.25 -51.93 -0.32 0.17 16 26 H 0.07 0.38 7.92 -51.93 -0.41 -0.04 16 27 H 0.13 1.23 6.27 -52.49 -0.33 0.90 16 28 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.03 0.61 8.04 -51.93 -0.42 0.20 16 31 H 0.33 7.23 8.71 -39.29 -0.34 6.89 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.13 1.78 6.89 -52.49 -0.36 1.41 16 LS Contribution 297.04 15.07 4.48 4.48 Total: -1.00 -33.22 297.04 -7.66 -40.88 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.08 Total: 1.19 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.28 Total: -4.23 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.75 Total: -59.43 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.22 -7.66 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905524285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.762 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds