Wall clock time and date at job start Sun Mar 29 2020 22:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00060 * 2 1 4 4 C 1.39171 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.39495 * 120.86464 * 179.72476 * 4 2 1 6 6 C 1.37883 * 119.06421 * 179.75515 * 5 4 2 7 7 N 1.32013 * 120.84149 * 0.52683 * 6 5 4 8 8 C 1.31980 * 121.91172 * 359.72509 * 7 6 5 9 9 C 1.50697 * 119.57642 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47221 * 275.02085 * 9 8 7 11 11 C 1.46907 * 110.99993 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47073 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00216 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00070 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46998 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47316 * 119.99768 * 16 14 12 19 19 H 1.48502 * 109.47266 * 240.00252 * 16 14 12 20 20 C 1.37908 * 120.84346 * 0.02562 * 8 7 6 21 21 H 1.09002 * 109.47391 * 240.00370 * 1 2 3 22 22 H 1.09001 * 109.46813 * 120.00427 * 1 2 3 23 23 H 1.09004 * 109.47041 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47655 * 90.00107 * 3 2 1 25 25 H 1.09006 * 109.46899 * 210.00007 * 3 2 1 26 26 H 1.08997 * 109.46879 * 329.99184 * 3 2 1 27 27 H 1.07995 * 120.46916 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.57543 * 180.25001 * 6 5 4 29 29 H 1.09005 * 109.47272 * 35.02531 * 9 8 7 30 30 H 1.08999 * 109.47071 * 155.01530 * 9 8 7 31 31 H 1.00904 * 110.99761 * 303.95440 * 10 9 8 32 32 H 1.09003 * 109.46887 * 299.99989 * 11 10 9 33 33 H 1.08999 * 109.46776 * 59.99837 * 11 10 9 34 34 H 0.96997 * 120.00132 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.47077 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5556 -1.2263 -0.0052 6 6 4.2072 -2.4414 0.0007 7 7 3.5281 -3.5735 0.0012 8 6 2.2085 -3.5955 0.0015 9 6 1.4866 -4.9183 0.0015 10 7 1.3581 -5.4060 -1.3781 11 6 0.6571 -6.6965 -1.4172 12 6 0.5440 -7.1636 -2.8455 13 1 0.9517 -6.5619 -3.6444 14 6 -0.0809 -8.3586 -3.1325 15 7 -0.5777 -9.0911 -2.1597 16 14 -0.2218 -8.9374 -4.9030 17 1 0.4121 -7.9395 -5.8019 18 1 0.4650 -10.2455 -5.0523 19 1 -1.6549 -9.0867 -5.2624 20 6 1.4819 -2.4234 0.0008 21 1 -0.3634 -0.5138 0.8900 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 2.3792 1.5834 1.0276 25 1 3.1500 1.1383 -0.5139 26 1 1.6085 2.0283 -0.5139 27 1 4.1172 -0.3039 -0.0106 28 1 5.2869 -2.4674 0.0004 29 1 2.0515 -5.6405 0.5911 30 1 0.4951 -4.7911 0.4358 31 1 0.8943 -4.7251 -1.9606 32 1 1.2159 -7.4312 -0.8374 33 1 -0.3402 -6.5811 -0.9929 34 1 -1.0170 -9.9320 -2.3616 35 1 0.4021 -2.4484 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905524285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:04 Heat of formation + Delta-G solvation = 19.980085 kcal Electronic energy + Delta-G solvation = -15827.567121 eV Core-core repulsion = 13245.553884 eV Total energy + Delta-G solvation = -2582.013238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23578 -38.09125 -36.95298 -34.68088 -32.49654 -32.05491 -29.66499 -28.65557 -26.55950 -25.72854 -23.68491 -23.27452 -21.51422 -18.75340 -18.08421 -17.67791 -16.76151 -16.34935 -16.15183 -16.00152 -15.42829 -15.36426 -15.00094 -14.67070 -14.11843 -14.09139 -13.49450 -13.36661 -13.29135 -13.02117 -12.82926 -12.63867 -12.55821 -12.18405 -11.97198 -11.45311 -11.31240 -10.67026 -10.21638 -9.95412 -9.13527 -8.58855 -8.22412 -6.33778 0.27100 0.65090 1.41234 1.42794 1.56755 2.11473 2.40710 2.93632 3.10698 3.44202 3.71214 3.90147 4.03637 4.17065 4.33318 4.39064 4.47287 4.51635 4.59811 4.70345 4.75503 4.85389 4.89993 4.91614 5.04631 5.06832 5.14337 5.25131 5.60324 5.74288 6.00137 6.22225 6.35205 6.41015 6.66848 6.86204 7.35090 7.36839 8.89592 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.004546 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.306596 B = 6157.369352 C = 6424.458696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.085 3.915 4 C 0.242 3.758 5 C -0.251 4.251 6 C 0.127 3.873 7 N -0.546 5.546 8 C 0.164 3.836 9 C 0.110 3.890 10 N -0.679 5.679 11 C 0.209 3.791 12 C -0.536 4.536 13 H 0.062 0.938 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.274 1.274 20 C -0.249 4.249 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.177 0.823 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.333 0.667 32 H 0.001 0.999 33 H -0.032 1.032 34 H 0.266 0.734 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 23.060 5.058 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.341 5.341 3 C -0.057 4.057 4 C 0.130 3.870 5 C -0.276 4.276 6 C -0.029 4.029 7 N -0.260 5.260 8 C 0.027 3.973 9 C -0.020 4.020 10 N -0.310 5.310 11 C 0.081 3.919 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.275 4.275 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.179 0.821 28 H 0.194 0.806 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.019 0.981 33 H -0.014 1.014 34 H 0.075 0.925 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.758 22.025 5.098 23.102 hybrid contribution -1.610 0.217 -0.356 1.663 sum 3.149 22.242 4.742 22.959 Atomic orbital electron populations 1.21814 0.78200 1.04254 1.01305 1.46546 1.06137 1.03105 1.78348 1.21933 0.97815 0.83594 1.02315 1.18133 0.91946 0.86356 0.90538 1.21885 0.92491 1.00790 1.12452 1.22968 1.01130 0.86782 0.92023 1.67494 1.08838 1.32072 1.17603 1.20748 0.89864 0.93910 0.92763 1.20715 0.97126 0.92514 0.91621 1.60485 1.56795 1.05478 1.08248 1.19251 0.89798 0.86384 0.96426 1.21529 1.36631 1.06007 0.93250 0.92019 1.25954 0.94699 0.96442 1.02496 1.70095 1.39117 1.14138 1.33987 0.85245 0.77996 0.78154 0.78635 1.18874 1.20291 1.19948 1.21450 1.01112 0.91545 1.13392 0.92775 0.93129 0.87856 0.92207 0.90653 0.89309 0.82108 0.80611 0.91548 0.93882 0.85012 0.98110 1.01406 0.92507 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 9.44 127.77 1.21 2.49 16 2 N -0.63 -11.48 3.39 -746.63 -2.53 -14.02 16 3 C 0.09 0.92 10.19 127.77 1.30 2.22 16 4 C 0.24 6.04 6.58 38.58 0.25 6.30 16 5 C -0.25 -5.74 9.27 22.49 0.21 -5.53 16 6 C 0.13 3.48 11.17 84.58 0.94 4.43 16 7 N -0.55 -19.91 10.27 -184.20 -1.89 -21.80 16 8 C 0.16 5.95 6.29 42.46 0.27 6.21 16 9 C 0.11 4.52 5.99 85.56 0.51 5.03 16 10 N -0.68 -32.55 6.48 -521.98 -3.38 -35.93 16 11 C 0.21 11.86 5.44 85.55 0.47 12.32 16 12 C -0.54 -31.98 9.32 25.60 0.24 -31.74 16 13 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 14 C 0.00 0.13 5.46 84.65 0.46 0.60 16 15 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 16 Si 0.98 45.46 29.54 68.60 2.03 47.49 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.25 -7.50 8.99 22.49 0.20 -7.30 16 21 H 0.05 0.84 7.99 -2.39 -0.02 0.82 16 22 H 0.05 0.84 7.99 -2.39 -0.02 0.82 16 23 H 0.10 0.90 7.79 -2.38 -0.02 0.88 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.75 6.25 -2.38 -0.01 0.73 16 26 H 0.09 0.61 7.92 -2.39 -0.02 0.59 16 27 H 0.16 2.48 6.27 -2.91 -0.02 2.46 16 28 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.04 1.65 8.04 -2.39 -0.02 1.64 16 31 H 0.33 15.15 8.71 -89.69 -0.78 14.37 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H -0.03 -1.88 8.14 -2.39 -0.02 -1.90 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.13 3.70 6.89 -2.91 -0.02 3.68 16 Total: -1.00 -72.81 297.04 0.86 -71.95 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.30 Total: 14.63 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 6.06 Total: -4.96 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -7.52 Total: -129.10 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.81 0.86 -71.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905524285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.929 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds