Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40081 * 126.03723 * 2 1 4 4 C 1.30828 * 108.20591 * 180.23447 * 3 2 1 5 5 C 1.50709 * 125.89750 * 179.81794 * 4 3 2 6 6 C 1.53008 * 117.49762 * 163.70301 * 5 4 3 7 7 C 1.53002 * 117.49803 * 95.04634 * 5 4 3 8 8 C 1.39872 * 108.20306 * 359.78274 * 4 3 2 9 9 C 1.34940 * 126.03754 * 179.85066 * 2 1 3 10 10 C 1.50706 * 126.13005 * 0.03469 * 9 2 1 11 11 N 1.46904 * 109.46698 * 274.71578 * 10 9 2 12 12 C 1.46902 * 110.99643 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47253 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00054 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47222 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47262 * 119.99910 * 17 15 13 20 20 H 1.48505 * 109.47343 * 240.00166 * 17 15 13 21 21 H 1.08999 * 109.47072 * 270.14685 * 1 2 3 22 22 H 1.08995 * 109.47552 * 30.15181 * 1 2 3 23 23 H 1.09005 * 109.47194 * 150.15115 * 1 2 3 24 24 H 1.08990 * 115.55123 * 309.37435 * 5 4 3 25 25 H 1.09003 * 117.49725 * 0.02562 * 6 5 4 26 26 H 1.08999 * 117.49577 * 145.02014 * 6 5 4 27 27 H 1.08991 * 117.49793 * 214.97494 * 7 5 4 28 28 H 1.09008 * 117.49933 * 359.97438 * 7 5 4 29 29 H 1.08004 * 126.03876 * 179.97438 * 8 4 3 30 30 H 1.09005 * 109.46949 * 34.71202 * 10 9 2 31 31 H 1.08998 * 109.47477 * 154.71366 * 10 9 2 32 32 H 1.00898 * 111.00384 * 56.04711 * 11 10 9 33 33 H 1.09008 * 109.46659 * 299.99954 * 12 11 10 34 34 H 1.08999 * 109.47143 * 59.99405 * 12 11 10 35 35 H 0.96998 * 119.99920 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0051 5 6 4.7496 1.6237 -0.0108 6 6 6.0915 0.9917 0.3647 7 6 5.3956 1.9463 1.3381 8 6 3.5437 -0.6666 -0.0034 9 6 2.2589 -1.0912 0.0028 10 6 1.7974 -2.5258 0.0058 11 7 1.5384 -2.9539 1.3871 12 6 1.0850 -4.3506 1.4290 13 6 0.8294 -4.7530 2.8586 14 1 0.9882 -4.0425 3.6562 15 6 0.3927 -6.0284 3.1482 16 7 0.1987 -6.8935 2.1768 17 14 0.0765 -6.5274 4.9202 18 1 0.3685 -5.3804 5.8172 19 1 -1.3449 -6.9284 5.0755 20 1 0.9551 -7.6702 5.2770 21 1 -0.3633 0.0026 1.0277 22 1 -0.3634 0.8886 -0.5161 23 1 -0.3634 -0.8914 -0.5115 24 1 4.7563 2.4043 -0.7715 25 1 6.0955 -0.0691 0.6154 26 1 6.9809 1.3568 -0.1488 27 1 5.8276 2.9389 1.4647 28 1 4.9415 1.5139 2.2298 29 1 4.4211 -1.2963 -0.0070 30 1 0.8822 -2.6143 -0.5796 31 1 2.5708 -3.1573 -0.4313 32 1 0.8715 -2.3440 1.8357 33 1 0.1648 -4.4512 0.8534 34 1 1.8532 -4.9949 1.0015 35 1 -0.1081 -7.7908 2.3806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905618786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = 97.807879 kcal Electronic energy + Delta-G solvation = -15908.968209 eV Core-core repulsion = 13330.329838 eV Total energy + Delta-G solvation = -2578.638371 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09459 -37.16951 -35.44175 -32.86590 -32.46007 -30.33355 -27.05855 -26.72588 -24.27889 -23.05740 -22.38232 -21.53018 -19.82595 -18.97528 -16.80265 -16.06443 -15.74975 -15.23568 -14.89353 -14.51719 -14.28815 -13.79150 -13.40943 -12.82646 -12.56923 -12.42950 -12.20996 -11.76505 -11.64715 -11.49519 -11.29977 -10.79913 -10.76090 -10.68826 -10.58255 -10.11164 -10.01756 -9.28111 -8.82559 -8.55080 -8.22952 -7.45671 -6.09804 -4.12091 2.07292 2.66906 2.93559 3.27608 3.35243 3.40570 3.85571 4.38543 4.47497 4.81523 4.87919 4.94719 5.00852 5.22236 5.26584 5.29604 5.39573 5.51056 5.55123 5.60451 5.70729 5.91438 5.97046 6.02711 6.12754 6.18418 6.50959 6.87437 7.08325 7.24512 7.28045 7.69460 7.96407 8.02202 8.22795 8.46490 8.96737 9.53327 11.01277 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031167 B = 0.004838 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.167149 B = 5785.588850 C = 6173.127954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.373 5.373 3 N -0.300 5.300 4 C 0.099 3.901 5 C -0.076 4.076 6 C -0.166 4.166 7 C -0.167 4.167 8 C -0.256 4.256 9 C 0.105 3.895 10 C 0.118 3.882 11 N -0.680 5.680 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.328 0.672 33 H -0.012 1.012 34 H 0.032 0.968 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 14.254 -5.652 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.155 5.155 3 N -0.123 5.123 4 C -0.066 4.066 5 C -0.096 4.096 6 C -0.203 4.203 7 C -0.205 4.205 8 C -0.285 4.285 9 C -0.022 4.022 10 C -0.013 4.013 11 N -0.311 5.311 12 C 0.067 3.933 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.209 1.209 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.133 0.867 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.163 0.837 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.006 0.994 34 H 0.050 0.950 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.168 14.882 -5.569 16.709 hybrid contribution -0.742 -1.066 0.557 1.413 sum 4.425 13.816 -5.012 15.349 Atomic orbital electron populations 1.21830 0.74647 1.04088 1.03564 1.48356 1.06240 1.03377 1.57536 1.77180 1.01104 1.07770 1.26197 1.21245 0.92015 0.93138 1.00239 1.20075 0.89191 1.00293 1.00073 1.23020 0.94464 0.99855 1.03005 1.22986 1.03300 1.00568 0.93607 1.20992 0.96448 0.93779 1.17305 1.21233 0.91041 0.90447 0.99511 1.20544 0.99929 0.87534 0.93304 1.60737 1.51745 1.06557 1.12055 1.19619 0.93874 0.82289 0.97468 1.21184 1.44233 0.97549 0.92436 0.91873 1.24979 0.95453 0.96410 0.97620 1.69964 1.46597 1.05506 1.31581 0.86414 0.77717 0.78589 0.84543 1.19636 1.21052 1.20890 0.90621 0.89586 0.89549 0.86688 0.87980 0.88338 0.88489 0.88511 0.83743 0.95087 0.88965 0.85573 0.99402 0.94996 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 11.27 59.85 0.67 1.90 16 2 N -0.37 -5.95 4.01 -63.88 -0.26 -6.21 16 3 N -0.30 -5.06 12.57 33.67 0.42 -4.64 16 4 C 0.10 1.54 6.85 -82.40 -0.56 0.98 16 5 C -0.08 -0.92 6.33 -91.76 -0.58 -1.50 16 6 C -0.17 -1.67 10.02 -26.69 -0.27 -1.94 16 7 C -0.17 -1.77 10.24 -26.69 -0.27 -2.05 16 8 C -0.26 -4.14 10.02 -40.01 -0.40 -4.54 16 9 C 0.11 1.76 6.44 -82.27 -0.53 1.23 16 10 C 0.12 2.07 5.86 -4.97 -0.03 2.04 16 11 N -0.68 -14.39 6.48 -116.33 -0.75 -15.14 16 12 C 0.19 4.93 5.44 -4.98 -0.03 4.91 16 13 C -0.52 -14.40 9.32 -34.44 -0.32 -14.72 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.09 0.96 7.14 -51.93 -0.37 0.59 16 24 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.10 1.09 7.15 -51.93 -0.37 0.72 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.14 2.15 7.39 -52.48 -0.39 1.76 16 30 H 0.03 0.52 7.23 -51.93 -0.38 0.14 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.33 6.74 8.71 -39.29 -0.34 6.39 16 33 H -0.01 -0.31 8.14 -51.92 -0.42 -0.74 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -31.44 301.50 -7.94 -39.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.20 Total: 3.40 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.42 Total: -12.18 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.15 Total: -51.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.44 -7.94 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905618786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.189 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds