Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40081 * 126.03723 * 2 1 4 4 C 1.30828 * 108.20591 * 180.23447 * 3 2 1 5 5 C 1.50709 * 125.89750 * 179.81794 * 4 3 2 6 6 C 1.53008 * 117.49762 * 163.70301 * 5 4 3 7 7 C 1.53002 * 117.49803 * 95.04634 * 5 4 3 8 8 C 1.39872 * 108.20306 * 359.78274 * 4 3 2 9 9 C 1.34940 * 126.03754 * 179.85066 * 2 1 3 10 10 C 1.50706 * 126.13005 * 0.03469 * 9 2 1 11 11 N 1.46904 * 109.46698 * 274.71578 * 10 9 2 12 12 C 1.46902 * 110.99643 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47253 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00054 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47222 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47262 * 119.99910 * 17 15 13 20 20 H 1.48505 * 109.47343 * 240.00166 * 17 15 13 21 21 H 1.08999 * 109.47072 * 270.14685 * 1 2 3 22 22 H 1.08995 * 109.47552 * 30.15181 * 1 2 3 23 23 H 1.09005 * 109.47194 * 150.15115 * 1 2 3 24 24 H 1.08990 * 115.55123 * 309.37435 * 5 4 3 25 25 H 1.09003 * 117.49725 * 0.02562 * 6 5 4 26 26 H 1.08999 * 117.49577 * 145.02014 * 6 5 4 27 27 H 1.08991 * 117.49793 * 214.97494 * 7 5 4 28 28 H 1.09008 * 117.49933 * 359.97438 * 7 5 4 29 29 H 1.08004 * 126.03876 * 179.97438 * 8 4 3 30 30 H 1.09005 * 109.46949 * 34.71202 * 10 9 2 31 31 H 1.08998 * 109.47477 * 154.71366 * 10 9 2 32 32 H 1.00898 * 111.00384 * 56.04711 * 11 10 9 33 33 H 1.09008 * 109.46659 * 299.99954 * 12 11 10 34 34 H 1.08999 * 109.47143 * 59.99405 * 12 11 10 35 35 H 0.96998 * 119.99920 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0051 5 6 4.7496 1.6237 -0.0108 6 6 6.0915 0.9917 0.3647 7 6 5.3956 1.9463 1.3381 8 6 3.5437 -0.6666 -0.0034 9 6 2.2589 -1.0912 0.0028 10 6 1.7974 -2.5258 0.0058 11 7 1.5384 -2.9539 1.3871 12 6 1.0850 -4.3506 1.4290 13 6 0.8294 -4.7530 2.8586 14 1 0.9882 -4.0425 3.6562 15 6 0.3927 -6.0284 3.1482 16 7 0.1987 -6.8935 2.1768 17 14 0.0765 -6.5274 4.9202 18 1 0.3685 -5.3804 5.8172 19 1 -1.3449 -6.9284 5.0755 20 1 0.9551 -7.6702 5.2770 21 1 -0.3633 0.0026 1.0277 22 1 -0.3634 0.8886 -0.5161 23 1 -0.3634 -0.8914 -0.5115 24 1 4.7563 2.4043 -0.7715 25 1 6.0955 -0.0691 0.6154 26 1 6.9809 1.3568 -0.1488 27 1 5.8276 2.9389 1.4647 28 1 4.9415 1.5139 2.2298 29 1 4.4211 -1.2963 -0.0070 30 1 0.8822 -2.6143 -0.5796 31 1 2.5708 -3.1573 -0.4313 32 1 0.8715 -2.3440 1.8357 33 1 0.1648 -4.4512 0.8534 34 1 1.8532 -4.9949 1.0015 35 1 -0.1081 -7.7908 2.3806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905618786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = 77.201020 kcal Electronic energy + Delta-G solvation = -15909.861790 eV Core-core repulsion = 13330.329838 eV Total energy + Delta-G solvation = -2579.531952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.30938 -38.11822 -37.12902 -34.70532 -33.76491 -31.83947 -28.88987 -27.78309 -25.97939 -24.08018 -23.50826 -23.18089 -21.05337 -20.10996 -18.66363 -17.52814 -16.85033 -16.72277 -16.44389 -16.08454 -15.27806 -15.05504 -15.03398 -14.48005 -13.95557 -13.66806 -13.40530 -13.25255 -13.20035 -12.86081 -12.67655 -12.49147 -12.28808 -12.08794 -11.81061 -11.48631 -11.33810 -11.11246 -10.68298 -10.03954 -9.47389 -9.21460 -8.24371 -6.35075 0.81059 1.40803 1.42204 1.54606 1.55691 1.73062 2.39547 2.97274 3.09688 3.41479 3.53233 3.73774 3.98289 4.02710 4.10275 4.16744 4.30303 4.41947 4.53060 4.63032 4.69254 4.77109 4.84374 5.02300 5.05591 5.20527 5.22100 5.29466 5.33904 5.57718 5.70270 5.95817 6.04908 6.33681 6.58388 6.74559 6.83133 7.35761 8.87134 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.031167 B = 0.004838 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.167149 B = 5785.588850 C = 6173.127954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.376 5.376 3 N -0.321 5.321 4 C 0.096 3.904 5 C -0.095 4.095 6 C -0.152 4.152 7 C -0.163 4.163 8 C -0.266 4.266 9 C 0.092 3.908 10 C 0.125 3.875 11 N -0.681 5.681 12 C 0.209 3.791 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.080 0.920 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.332 0.668 33 H -0.029 1.029 34 H 0.008 0.992 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 15.205 -5.108 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.159 5.159 3 N -0.144 5.144 4 C -0.069 4.069 5 C -0.115 4.115 6 C -0.190 4.190 7 C -0.201 4.201 8 C -0.296 4.296 9 C -0.036 4.036 10 C -0.006 4.006 11 N -0.312 5.312 12 C 0.082 3.918 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.795 3.205 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.098 0.902 22 H 0.123 0.877 23 H 0.114 0.886 24 H 0.147 0.853 25 H 0.111 0.889 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.097 0.903 29 H 0.170 0.830 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.149 0.851 33 H -0.012 1.012 34 H 0.026 0.974 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.679 15.856 -5.033 17.578 hybrid contribution -0.890 -1.318 0.340 1.626 sum 4.789 14.538 -4.693 16.009 Atomic orbital electron populations 1.22100 0.72931 1.05521 1.04319 1.48637 1.07336 1.02851 1.57065 1.77142 1.01848 1.08393 1.27017 1.21766 0.92711 0.93361 0.99042 1.20259 0.88793 1.00907 1.01523 1.23115 0.94334 0.99347 1.02179 1.23040 1.02891 1.01937 0.92240 1.21253 0.96625 0.94535 1.17171 1.21096 0.91654 0.90117 1.00729 1.20458 1.00489 0.88251 0.91353 1.60577 1.51371 1.04613 1.14616 1.19258 0.92207 0.84303 0.96049 1.21513 1.44567 0.97982 0.93422 0.92134 1.25867 0.94956 0.96327 1.02093 1.70072 1.47171 1.05985 1.33844 0.85322 0.77858 0.78249 0.79092 1.19018 1.20170 1.20350 0.90171 0.87721 0.88630 0.85299 0.88922 0.85616 0.86048 0.90350 0.82998 0.93877 0.88900 0.85112 1.01153 0.97376 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.14 11.27 127.77 1.44 3.58 16 2 N -0.38 -11.76 4.01 -356.03 -1.43 -13.19 16 3 N -0.32 -10.60 12.57 -47.38 -0.60 -11.20 16 4 C 0.10 2.92 6.85 43.11 0.30 3.22 16 5 C -0.09 -2.14 6.33 -11.53 -0.07 -2.21 16 6 C -0.15 -2.74 10.02 30.62 0.31 -2.43 16 7 C -0.16 -3.17 10.24 30.62 0.31 -2.86 16 8 C -0.27 -8.50 10.02 21.99 0.22 -8.28 16 9 C 0.09 3.05 6.44 41.41 0.27 3.32 16 10 C 0.13 4.38 5.86 85.56 0.50 4.88 16 11 N -0.68 -28.93 6.48 -521.95 -3.38 -32.32 16 12 C 0.21 10.84 5.44 85.56 0.47 11.31 16 13 C -0.54 -30.14 9.32 25.60 0.24 -29.90 16 14 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 17 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.10 2.03 7.14 -2.38 -0.02 2.01 16 24 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.09 1.85 7.15 -2.39 -0.02 1.84 16 26 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.15 4.46 7.39 -2.91 -0.02 4.44 16 30 H 0.04 1.42 7.23 -2.38 -0.02 1.40 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.33 13.63 8.71 -89.70 -0.78 12.85 16 33 H -0.03 -1.59 8.14 -2.38 -0.02 -1.61 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -66.38 301.50 1.64 -64.74 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.30 Total: 19.40 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.44 Total: -18.56 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -5.12 Total: -111.32 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.38 1.64 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905618786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.944 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds