Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47426 * 2 1 4 4 C 1.46902 * 111.00144 * 296.26250 * 3 2 1 5 5 C 1.50702 * 109.46924 * 295.22376 * 4 3 2 6 6 H 1.07998 * 120.00285 * 355.47918 * 5 4 3 7 7 C 1.37882 * 120.00154 * 175.47210 * 5 4 3 8 8 N 1.31511 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99584 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47270 * 89.99878 * 9 7 5 11 11 H 1.48504 * 109.46786 * 209.99851 * 9 7 5 12 12 H 1.48497 * 109.47386 * 329.99310 * 9 7 5 13 13 C 1.46901 * 111.00246 * 60.21726 * 3 2 1 14 14 H 1.09001 * 109.46701 * 296.04757 * 13 3 2 15 15 C 1.52997 * 109.47255 * 176.05008 * 13 3 2 16 16 C 1.50694 * 109.46981 * 56.04313 * 13 3 2 17 17 N 1.31801 * 119.12063 * 224.99940 * 16 13 3 18 18 C 1.32335 * 120.81254 * 180.02562 * 17 16 13 19 19 C 1.38595 * 119.10920 * 0.02562 * 18 17 16 20 20 C 1.38602 * 118.39833 * 0.02562 * 19 18 17 21 21 N 1.31794 * 119.12197 * 45.02753 * 16 13 3 22 22 H 1.08996 * 109.46723 * 62.11159 * 1 2 3 23 23 H 1.09003 * 109.47274 * 182.11632 * 1 2 3 24 24 H 1.08999 * 109.46822 * 302.11248 * 1 2 3 25 25 H 1.09003 * 109.47195 * 239.99678 * 2 1 3 26 26 H 1.09004 * 109.46872 * 120.00508 * 2 1 3 27 27 H 1.08996 * 109.46981 * 55.21691 * 4 3 2 28 28 H 1.08994 * 109.47337 * 175.22499 * 4 3 2 29 29 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47061 * 299.99528 * 15 13 3 31 31 H 1.09000 * 109.47454 * 59.99482 * 15 13 3 32 32 H 1.08999 * 109.46933 * 179.97438 * 15 13 3 33 33 H 1.08001 * 120.44079 * 179.72630 * 18 17 16 34 34 H 1.07995 * 120.79967 * 179.97438 * 19 18 17 35 35 H 1.07994 * 120.44546 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6231 2.0836 -1.2299 5 6 2.2953 1.4372 -2.4138 6 1 3.0074 0.6397 -2.2615 7 6 2.0010 1.8640 -3.6914 8 7 2.5879 1.3003 -4.7245 9 14 0.7696 3.2437 -3.9548 10 1 1.4792 4.5482 -3.9496 11 1 0.0880 3.0562 -5.2607 12 1 -0.2373 3.2236 -2.8635 13 6 1.5530 2.1084 1.1903 14 1 0.4659 2.1840 1.1664 15 6 2.1617 3.5120 1.2052 16 6 1.9776 1.3634 2.4295 17 7 1.1072 1.1911 3.4041 18 6 1.4443 0.5425 4.5072 19 6 2.7313 0.0428 4.6289 20 6 3.6184 0.2448 3.5834 21 7 3.2094 0.9019 2.5100 22 1 -0.3632 0.4807 -0.9083 23 1 -0.3634 -1.0270 0.0380 24 1 -0.3633 0.5463 0.8704 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5413 2.0237 -1.3490 28 1 1.9245 3.1291 -1.1671 29 1 2.3812 1.6007 -5.6234 30 1 3.2488 3.4363 1.2291 31 1 1.8546 4.0508 0.3089 32 1 1.8150 4.0489 2.0882 33 1 0.7276 0.4087 5.3040 34 1 3.0357 -0.4904 5.5174 35 1 4.6292 -0.1308 3.6430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = 63.625901 kcal Electronic energy + Delta-G solvation = -16936.272441 eV Core-core repulsion = 14356.151828 eV Total energy + Delta-G solvation = -2580.120613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98766 -37.68055 -33.56073 -33.08254 -32.17090 -30.73725 -28.92428 -26.66351 -24.63497 -24.32767 -22.71676 -21.68459 -19.04638 -17.38753 -16.96842 -16.46743 -15.37249 -15.18391 -14.96058 -14.39386 -13.90236 -13.63829 -13.42260 -13.11087 -12.47023 -12.23202 -11.94712 -11.82110 -11.37121 -11.07514 -10.92602 -10.80663 -10.69771 -10.47215 -10.20231 -9.93495 -9.86963 -9.41745 -9.16163 -9.02448 -8.51248 -7.25367 -6.00380 -3.96661 0.98085 1.21398 3.31140 3.38629 3.40117 3.87586 4.01031 4.25819 4.45595 4.62532 4.89267 5.00358 5.14896 5.30013 5.37028 5.61963 5.66755 5.78794 5.83104 5.93745 5.99442 6.10785 6.24431 6.43026 6.45150 6.58756 6.64317 6.84597 7.00273 7.08852 7.15002 7.64635 7.93844 8.06525 8.33434 8.71272 9.09881 9.61408 11.12843 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040490 B = 0.006787 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.363166 B = 4124.328137 C = 4205.805134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.064 3.936 3 N -0.504 5.504 4 C 0.154 3.846 5 C -0.503 4.503 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.140 3.860 14 H 0.061 0.939 15 C -0.139 4.139 16 C 0.341 3.659 17 N -0.522 5.522 18 C 0.142 3.858 19 C -0.244 4.244 20 C 0.143 3.857 21 N -0.480 5.480 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.045 0.955 27 H -0.004 1.004 28 H 0.030 0.970 29 H 0.263 0.737 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.163 0.837 34 H 0.142 0.858 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -0.838 17.812 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.064 4.064 3 N -0.228 5.228 4 C 0.029 3.971 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.191 1.191 13 C 0.029 3.971 14 H 0.078 0.922 15 C -0.197 4.197 16 C 0.074 3.926 17 N -0.237 5.237 18 C -0.025 4.025 19 C -0.266 4.266 20 C -0.024 4.024 21 N -0.193 5.193 22 H 0.084 0.916 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.952 -0.342 16.794 16.911 hybrid contribution -1.250 0.113 0.638 1.408 sum -3.202 -0.229 17.432 17.725 Atomic orbital electron populations 1.22423 0.99431 1.01176 1.01930 1.21963 0.91804 0.90960 1.01685 1.62197 1.58513 1.01415 1.00683 1.20350 0.94382 0.94901 0.87498 1.21000 1.24655 1.20132 0.88307 0.90071 1.24874 0.95995 0.96408 0.95994 1.69891 1.43337 1.42359 0.98484 0.86938 0.82321 0.83268 0.77734 1.20121 1.21294 1.19141 1.20338 0.97555 0.92907 0.86254 0.92159 1.21848 1.02433 0.93819 1.01634 1.23236 0.85037 0.90671 0.93675 1.68258 1.37452 1.16027 1.01920 1.23138 0.94608 0.90214 0.94513 1.22857 0.96692 1.04832 1.02199 1.23370 0.99960 0.91151 0.87899 1.68433 1.17631 1.09092 1.24103 0.91564 0.93293 0.93365 0.89095 0.93693 0.98643 0.95171 0.92748 0.91025 0.90871 0.93186 0.82000 0.84016 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 9.24 37.16 0.34 -3.22 16 2 C 0.06 1.32 5.53 -3.83 -0.02 1.30 16 3 N -0.50 -10.89 4.39 -229.48 -1.01 -11.90 16 4 C 0.15 3.73 3.41 -4.97 -0.02 3.72 16 5 C -0.50 -14.25 8.91 -34.44 -0.31 -14.56 16 6 H 0.08 2.53 7.46 -52.49 -0.39 2.14 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.87 21.44 27.56 -169.99 -4.68 16.75 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.31 6.41 56.52 0.36 -5.95 16 13 C 0.14 2.61 1.97 -68.87 -0.14 2.48 16 14 H 0.06 1.14 6.46 -51.93 -0.34 0.80 16 15 C -0.14 -2.37 8.96 37.16 0.33 -2.04 16 16 C 0.34 5.86 5.06 -157.19 -0.80 5.06 16 17 N -0.52 -8.06 10.32 -10.73 -0.11 -8.17 16 18 C 0.14 1.63 11.30 -17.20 -0.19 1.44 16 19 C -0.24 -2.47 10.17 -39.32 -0.40 -2.87 16 20 C 0.14 1.78 11.31 -17.20 -0.19 1.59 16 21 N -0.48 -8.05 9.64 -10.73 -0.10 -8.16 16 22 H 0.07 1.34 6.49 -51.93 -0.34 1.00 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 25 H 0.09 2.08 6.77 -51.93 -0.35 1.73 16 26 H 0.04 0.89 6.64 -51.93 -0.34 0.54 16 27 H 0.00 -0.10 4.96 -51.93 -0.26 -0.36 16 28 H 0.03 0.72 5.53 -51.93 -0.29 0.44 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 6.22 -51.93 -0.32 0.94 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 281.64 15.07 4.24 4.24 Total: -1.00 -32.19 281.64 -7.04 -39.24 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.67 Total: 0.12 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.49 Total: -5.22 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.45 Total: -55.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.68 Total: 16.75 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.19 -7.04 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.865 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds