Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47426 * 2 1 4 4 C 1.46902 * 111.00144 * 296.26250 * 3 2 1 5 5 C 1.50702 * 109.46924 * 295.22376 * 4 3 2 6 6 H 1.07998 * 120.00285 * 355.47918 * 5 4 3 7 7 C 1.37882 * 120.00154 * 175.47210 * 5 4 3 8 8 N 1.31511 * 120.00039 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99584 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47270 * 89.99878 * 9 7 5 11 11 H 1.48504 * 109.46786 * 209.99851 * 9 7 5 12 12 H 1.48497 * 109.47386 * 329.99310 * 9 7 5 13 13 C 1.46901 * 111.00246 * 60.21726 * 3 2 1 14 14 H 1.09001 * 109.46701 * 296.04757 * 13 3 2 15 15 C 1.52997 * 109.47255 * 176.05008 * 13 3 2 16 16 C 1.50694 * 109.46981 * 56.04313 * 13 3 2 17 17 N 1.31801 * 119.12063 * 224.99940 * 16 13 3 18 18 C 1.32335 * 120.81254 * 180.02562 * 17 16 13 19 19 C 1.38595 * 119.10920 * 0.02562 * 18 17 16 20 20 C 1.38602 * 118.39833 * 0.02562 * 19 18 17 21 21 N 1.31794 * 119.12197 * 45.02753 * 16 13 3 22 22 H 1.08996 * 109.46723 * 62.11159 * 1 2 3 23 23 H 1.09003 * 109.47274 * 182.11632 * 1 2 3 24 24 H 1.08999 * 109.46822 * 302.11248 * 1 2 3 25 25 H 1.09003 * 109.47195 * 239.99678 * 2 1 3 26 26 H 1.09004 * 109.46872 * 120.00508 * 2 1 3 27 27 H 1.08996 * 109.46981 * 55.21691 * 4 3 2 28 28 H 1.08994 * 109.47337 * 175.22499 * 4 3 2 29 29 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47061 * 299.99528 * 15 13 3 31 31 H 1.09000 * 109.47454 * 59.99482 * 15 13 3 32 32 H 1.08999 * 109.46933 * 179.97438 * 15 13 3 33 33 H 1.08001 * 120.44079 * 179.72630 * 18 17 16 34 34 H 1.07995 * 120.79967 * 179.97438 * 19 18 17 35 35 H 1.07994 * 120.44546 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6231 2.0836 -1.2299 5 6 2.2953 1.4372 -2.4138 6 1 3.0074 0.6397 -2.2615 7 6 2.0010 1.8640 -3.6914 8 7 2.5879 1.3003 -4.7245 9 14 0.7696 3.2437 -3.9548 10 1 1.4792 4.5482 -3.9496 11 1 0.0880 3.0562 -5.2607 12 1 -0.2373 3.2236 -2.8635 13 6 1.5530 2.1084 1.1903 14 1 0.4659 2.1840 1.1664 15 6 2.1617 3.5120 1.2052 16 6 1.9776 1.3634 2.4295 17 7 1.1072 1.1911 3.4041 18 6 1.4443 0.5425 4.5072 19 6 2.7313 0.0428 4.6289 20 6 3.6184 0.2448 3.5834 21 7 3.2094 0.9019 2.5100 22 1 -0.3632 0.4807 -0.9083 23 1 -0.3634 -1.0270 0.0380 24 1 -0.3633 0.5463 0.8704 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5413 2.0237 -1.3490 28 1 1.9245 3.1291 -1.1671 29 1 2.3812 1.6007 -5.6234 30 1 3.2488 3.4363 1.2291 31 1 1.8546 4.0508 0.3089 32 1 1.8150 4.0489 2.0882 33 1 0.7276 0.4087 5.3040 34 1 3.0357 -0.4904 5.5174 35 1 4.6292 -0.1308 3.6430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = 40.052409 kcal Electronic energy + Delta-G solvation = -16937.294664 eV Core-core repulsion = 14356.151828 eV Total energy + Delta-G solvation = -2581.142836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04842 -39.24776 -34.89445 -34.59188 -33.81911 -32.06922 -30.66194 -28.39338 -25.87979 -25.38522 -24.44001 -23.18279 -20.63761 -18.95257 -18.47959 -17.66418 -16.80911 -16.61559 -16.29386 -15.99909 -15.39645 -14.95845 -14.75969 -14.48879 -14.26493 -13.83481 -13.55156 -13.25694 -13.01963 -12.61950 -12.56544 -12.42665 -12.15926 -11.86400 -11.78814 -11.60669 -11.45574 -11.36663 -10.72539 -10.35946 -10.06273 -8.93741 -8.24277 -6.26362 -0.00523 0.28079 1.36761 1.37947 1.48251 2.37077 2.76625 2.91807 3.08705 3.12244 3.57186 3.83481 4.05877 4.11926 4.20324 4.28533 4.32902 4.42482 4.49597 4.56554 4.60123 4.78557 4.86823 4.93001 4.98931 5.08295 5.18104 5.22632 5.34639 5.53175 5.59817 6.00286 6.18322 6.36127 6.66716 6.79047 7.27702 7.36161 8.92576 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040490 B = 0.006787 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.363166 B = 4124.328137 C = 4205.805134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 N -0.519 5.519 4 C 0.167 3.833 5 C -0.507 4.507 6 H 0.034 0.966 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.248 1.248 13 C 0.140 3.860 14 H 0.059 0.941 15 C -0.133 4.133 16 C 0.319 3.681 17 N -0.541 5.541 18 C 0.133 3.867 19 C -0.216 4.216 20 C 0.126 3.874 21 N -0.521 5.521 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.053 0.947 27 H -0.002 1.002 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -0.315 20.664 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.056 4.056 3 N -0.243 5.243 4 C 0.040 3.960 5 C -0.546 4.546 6 H 0.052 0.948 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.764 3.236 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.172 1.172 13 C 0.030 3.970 14 H 0.076 0.924 15 C -0.192 4.192 16 C 0.051 3.949 17 N -0.256 5.256 18 C -0.032 4.032 19 C -0.238 4.238 20 C -0.039 4.039 21 N -0.235 5.235 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.015 0.985 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.219 0.781 34 H 0.206 0.794 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.226 0.169 19.688 19.951 hybrid contribution -0.738 -0.193 -0.083 0.768 sum -3.964 -0.023 19.605 20.002 Atomic orbital electron populations 1.22285 0.97659 1.02400 1.01378 1.21790 0.93168 0.90460 1.00228 1.62033 1.59430 1.01849 1.01009 1.20084 0.93724 0.94898 0.87284 1.21181 1.23897 1.19095 0.90411 0.94750 1.25788 0.98192 0.99304 0.95467 1.70052 1.45420 1.44470 0.99143 0.85804 0.79884 0.79736 0.78132 1.18827 1.20908 1.17194 1.20313 0.97400 0.93487 0.85807 0.92362 1.21796 1.01516 0.93409 1.02439 1.22713 0.85822 0.92466 0.93854 1.68206 1.37417 1.17108 1.02820 1.23895 0.96170 0.89021 0.94087 1.23304 0.95353 1.02619 1.02496 1.23935 1.01702 0.90682 0.87592 1.68319 1.17905 1.10690 1.26567 0.93391 0.91352 0.92241 0.92669 0.92860 0.98477 0.94505 0.92544 0.92306 0.91437 0.90826 0.78101 0.79437 0.79249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.59 9.24 71.98 0.66 -5.92 16 2 C 0.07 3.03 5.53 86.31 0.48 3.51 16 3 N -0.52 -22.85 4.39 -879.95 -3.86 -26.71 16 4 C 0.17 8.15 3.41 85.56 0.29 8.44 16 5 C -0.51 -29.94 8.91 25.60 0.23 -29.71 16 6 H 0.03 2.29 7.46 -2.91 -0.02 2.27 16 7 C 0.01 0.55 5.47 84.66 0.46 1.02 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.01 16 9 Si 0.94 44.39 27.56 68.60 1.89 46.28 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.25 -10.90 6.41 99.48 0.64 -10.26 16 13 C 0.14 5.16 1.97 44.17 0.09 5.25 16 14 H 0.06 2.14 6.46 -2.39 -0.02 2.13 16 15 C -0.13 -4.47 8.96 71.98 0.65 -3.82 16 16 C 0.32 10.61 5.06 138.75 0.70 11.31 16 17 N -0.54 -15.43 10.32 -187.85 -1.94 -17.36 16 18 C 0.13 2.56 11.30 84.70 0.96 3.52 16 19 C -0.22 -3.47 10.17 22.44 0.23 -3.24 16 20 C 0.13 2.84 11.31 84.70 0.96 3.79 16 21 N -0.52 -17.05 9.64 -187.85 -1.81 -18.86 16 22 H 0.05 1.93 6.49 -2.39 -0.02 1.91 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 2.06 6.38 -2.39 -0.02 2.04 16 25 H 0.05 2.67 6.77 -2.39 -0.02 2.66 16 26 H 0.05 2.13 6.64 -2.38 -0.02 2.12 16 27 H 0.00 -0.11 4.96 -2.39 -0.01 -0.12 16 28 H 0.04 1.76 5.53 -2.39 -0.01 1.75 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.28 6.22 -2.39 -0.01 2.27 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -73.07 281.64 1.29 -71.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.01 Total: 10.74 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.70 Total: -5.84 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -7.31 Total: -122.94 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.89 Total: 46.28 kcal Total: -73.07 1.29 -71.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.824 kcal (2) G-P(sol) polarization free energy of solvation -73.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds