Wall clock time and date at job start Sun Mar 29 2020 22:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 H 1.09004 * 109.46965 * 175.22250 * 3 2 1 5 5 C 1.50696 * 109.47394 * 55.22093 * 3 2 1 6 6 H 1.07997 * 120.00273 * 240.00308 * 5 3 2 7 7 C 1.37885 * 120.00041 * 60.00013 * 5 3 2 8 8 N 1.31511 * 119.99651 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47274 * 119.99615 * 9 7 5 12 12 H 1.48501 * 109.47216 * 239.99970 * 9 7 5 13 13 N 1.46901 * 109.47194 * 295.22311 * 3 2 1 14 14 C 1.46905 * 110.99929 * 274.72237 * 13 3 2 15 15 H 1.09000 * 109.47222 * 34.79928 * 14 13 3 16 16 C 1.53003 * 109.47144 * 274.80151 * 14 13 3 17 17 C 1.50695 * 109.47580 * 154.80104 * 14 13 3 18 18 N 1.31801 * 119.12023 * 44.72661 * 17 14 13 19 19 C 1.32334 * 120.81834 * 179.76089 * 18 17 14 20 20 C 1.38601 * 119.10304 * 0.50951 * 19 18 17 21 21 C 1.38602 * 118.39933 * 359.75021 * 20 19 18 22 22 N 1.31788 * 119.12497 * 225.00394 * 17 14 13 23 23 H 1.09005 * 109.47433 * 298.42351 * 1 2 3 24 24 H 1.09001 * 109.47205 * 58.42296 * 1 2 3 25 25 H 1.08999 * 109.47391 * 178.42315 * 1 2 3 26 26 H 1.08999 * 109.46847 * 240.00153 * 2 1 3 27 27 H 1.08996 * 109.46944 * 119.99882 * 2 1 3 28 28 H 0.97002 * 120.00084 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00140 * 38.67099 * 13 3 2 30 30 H 1.09002 * 109.47347 * 179.97438 * 16 14 13 31 31 H 1.09000 * 109.47404 * 299.99951 * 16 14 13 32 32 H 1.09009 * 109.47129 * 59.99776 * 16 14 13 33 33 H 1.07995 * 120.45036 * 180.27358 * 19 18 17 34 34 H 1.07997 * 120.80235 * 179.76897 * 20 19 18 35 35 H 1.07990 * 120.44791 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4436 0.0856 5 6 1.4433 2.1862 1.1669 6 1 0.8331 3.0605 0.9951 7 6 1.6765 1.7505 2.4542 8 7 2.4192 0.6856 2.6635 9 14 0.9364 2.6721 3.9006 10 1 0.1471 3.8263 3.4007 11 1 0.0496 1.7602 4.6671 12 1 2.0246 3.1627 4.7841 13 7 1.6467 2.1009 -1.2529 14 6 2.6210 1.8296 -2.3185 15 1 3.0156 0.8203 -2.2017 16 6 3.7676 2.8388 -2.2301 17 6 1.9457 1.9529 -3.6600 18 7 1.1454 2.9759 -3.8837 19 6 0.5389 3.1197 -5.0510 20 6 0.7466 2.1711 -6.0400 21 6 1.5908 1.1066 -5.7655 22 7 2.1667 1.0319 -4.5764 23 1 -0.3634 0.4892 0.9038 24 1 -0.3634 0.5381 -0.8755 25 1 -0.3634 -1.0272 -0.0283 26 1 1.8932 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.5830 0.3788 3.5690 29 1 0.7184 1.8216 -1.5323 30 1 4.4907 2.6373 -3.0204 31 1 3.3731 3.8482 -2.3469 32 1 4.2561 2.7497 -1.2597 33 1 -0.1122 3.9626 -5.2294 34 1 0.2626 2.2593 -7.0014 35 1 1.7765 0.3488 -6.5122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930694746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:24 Heat of formation + Delta-G solvation = 47.134730 kcal Electronic energy + Delta-G solvation = -16707.520242 eV Core-core repulsion = 14126.684518 eV Total energy + Delta-G solvation = -2580.835724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91533 -36.90749 -33.82962 -33.56698 -31.63979 -30.59501 -28.35174 -26.09121 -24.55400 -24.31346 -23.16164 -20.98101 -18.99152 -17.37153 -17.09660 -15.98965 -15.27705 -14.83654 -14.70012 -14.54671 -13.80184 -13.41901 -12.89671 -12.74730 -12.58559 -12.11083 -11.65198 -11.43079 -11.00627 -10.90396 -10.76783 -10.70395 -10.47692 -10.41116 -9.91104 -9.79597 -9.52031 -9.42579 -9.05317 -8.88729 -8.29294 -7.16941 -5.92462 -3.93181 0.97152 1.20072 3.35497 3.43600 3.49287 3.88680 4.05136 4.26824 4.50699 4.62008 4.99978 5.13346 5.32472 5.39213 5.41655 5.76786 5.91558 5.96896 6.28464 6.37026 6.39431 6.46105 6.52376 6.59818 6.82606 6.94786 7.12837 7.30684 7.32036 7.52265 7.75135 7.95236 8.25297 8.35731 8.58577 8.66953 9.13317 9.70156 11.14877 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038694 B = 0.006236 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.451850 B = 4489.141556 C = 4545.997115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.484 4.484 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.662 5.662 14 C 0.150 3.850 15 H 0.062 0.938 16 C -0.128 4.128 17 C 0.328 3.672 18 N -0.488 5.488 19 C 0.144 3.856 20 C -0.244 4.244 21 C 0.142 3.858 22 N -0.519 5.519 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.022 0.978 26 H 0.011 0.989 27 H 0.095 0.905 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 1.228 -15.085 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.187 4.187 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.295 5.295 14 C 0.038 3.962 15 H 0.080 0.920 16 C -0.187 4.187 17 C 0.061 3.939 18 N -0.202 5.202 19 C -0.023 4.023 20 C -0.266 4.266 21 C -0.024 4.024 22 N -0.233 5.233 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.160 0.840 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.349 1.650 -13.864 14.027 hybrid contribution -1.109 -0.536 -0.418 1.301 sum -2.458 1.114 -14.283 14.536 Atomic orbital electron populations 1.21555 0.97827 0.97931 1.01092 1.22136 0.94910 1.01306 1.00376 1.19313 0.96179 0.88456 0.85428 0.94503 1.21088 1.30315 1.11400 0.89448 0.91859 1.24906 0.95613 0.95196 0.98707 1.69893 1.39120 1.23978 1.20710 0.86518 0.78907 0.79867 0.82584 1.19750 1.21340 1.21238 1.60969 1.03225 1.62919 1.02400 1.20284 0.93508 0.98811 0.83625 0.92030 1.21728 0.95934 0.99343 1.01686 1.23679 0.89653 0.84767 0.95846 1.68395 1.07710 1.22734 1.21326 1.23344 0.93964 0.96964 0.88043 1.22863 1.03034 0.98228 1.02453 1.23195 0.90132 0.95612 0.93460 1.68320 1.24242 1.28503 1.02263 0.91476 0.95513 0.95905 0.97046 0.88714 0.93233 0.85227 0.93900 0.91737 0.90991 0.81750 0.83957 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.40 37.16 0.35 -2.45 16 2 C -0.15 -3.54 5.49 -26.74 -0.15 -3.69 16 3 C 0.21 5.33 2.14 -68.87 -0.15 5.19 16 4 H 0.04 1.00 7.13 -51.93 -0.37 0.63 16 5 C -0.48 -13.17 7.39 -34.44 -0.25 -13.43 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -25.38 11.37 55.43 0.63 -24.75 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.66 -14.61 5.86 -102.17 -0.60 -15.21 16 14 C 0.15 2.92 2.81 -68.86 -0.19 2.73 16 15 H 0.06 1.26 7.09 -51.93 -0.37 0.90 16 16 C -0.13 -2.32 9.38 37.16 0.35 -1.97 16 17 C 0.33 5.80 6.27 -157.20 -0.99 4.81 16 18 N -0.49 -8.16 10.04 -10.73 -0.11 -8.27 16 19 C 0.14 1.78 11.31 -17.20 -0.19 1.58 16 20 C -0.24 -2.50 10.17 -39.31 -0.40 -2.90 16 21 C 0.14 1.71 11.31 -17.20 -0.19 1.51 16 22 N -0.52 -8.40 10.32 -10.73 -0.11 -8.51 16 23 H 0.07 1.60 7.12 -51.93 -0.37 1.23 16 24 H 0.03 0.55 6.36 -51.93 -0.33 0.22 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.25 7.40 -51.93 -0.38 -0.13 16 27 H 0.09 2.52 6.21 -51.93 -0.32 2.20 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.33 7.27 6.07 -39.30 -0.24 7.03 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.37 7.44 -51.92 -0.39 0.98 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -30.00 288.94 -7.62 -37.62 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.85 Total: 5.46 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.91 Total: -7.19 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.19 Total: -56.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.00 -7.62 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.754 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds