Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 H 1.09004 * 109.46965 * 175.22250 * 3 2 1 5 5 C 1.50696 * 109.47394 * 55.22093 * 3 2 1 6 6 H 1.07997 * 120.00273 * 240.00308 * 5 3 2 7 7 C 1.37885 * 120.00041 * 60.00013 * 5 3 2 8 8 N 1.31511 * 119.99651 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47274 * 119.99615 * 9 7 5 12 12 H 1.48501 * 109.47216 * 239.99970 * 9 7 5 13 13 N 1.46901 * 109.47194 * 295.22311 * 3 2 1 14 14 C 1.46905 * 110.99929 * 274.72237 * 13 3 2 15 15 H 1.09000 * 109.47222 * 34.79928 * 14 13 3 16 16 C 1.53003 * 109.47144 * 274.80151 * 14 13 3 17 17 C 1.50695 * 109.47580 * 154.80104 * 14 13 3 18 18 N 1.31801 * 119.12023 * 44.72661 * 17 14 13 19 19 C 1.32334 * 120.81834 * 179.76089 * 18 17 14 20 20 C 1.38601 * 119.10304 * 0.50951 * 19 18 17 21 21 C 1.38602 * 118.39933 * 359.75021 * 20 19 18 22 22 N 1.31788 * 119.12497 * 225.00394 * 17 14 13 23 23 H 1.09005 * 109.47433 * 298.42351 * 1 2 3 24 24 H 1.09001 * 109.47205 * 58.42296 * 1 2 3 25 25 H 1.08999 * 109.47391 * 178.42315 * 1 2 3 26 26 H 1.08999 * 109.46847 * 240.00153 * 2 1 3 27 27 H 1.08996 * 109.46944 * 119.99882 * 2 1 3 28 28 H 0.97002 * 120.00084 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00140 * 38.67099 * 13 3 2 30 30 H 1.09002 * 109.47347 * 179.97438 * 16 14 13 31 31 H 1.09000 * 109.47404 * 299.99951 * 16 14 13 32 32 H 1.09009 * 109.47129 * 59.99776 * 16 14 13 33 33 H 1.07995 * 120.45036 * 180.27358 * 19 18 17 34 34 H 1.07997 * 120.80235 * 179.76897 * 20 19 18 35 35 H 1.07990 * 120.44791 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4436 0.0856 5 6 1.4433 2.1862 1.1669 6 1 0.8331 3.0605 0.9951 7 6 1.6765 1.7505 2.4542 8 7 2.4192 0.6856 2.6635 9 14 0.9364 2.6721 3.9006 10 1 0.1471 3.8263 3.4007 11 1 0.0496 1.7602 4.6671 12 1 2.0246 3.1627 4.7841 13 7 1.6467 2.1009 -1.2529 14 6 2.6210 1.8296 -2.3185 15 1 3.0156 0.8203 -2.2017 16 6 3.7676 2.8388 -2.2301 17 6 1.9457 1.9529 -3.6600 18 7 1.1454 2.9759 -3.8837 19 6 0.5389 3.1197 -5.0510 20 6 0.7466 2.1711 -6.0400 21 6 1.5908 1.1066 -5.7655 22 7 2.1667 1.0319 -4.5764 23 1 -0.3634 0.4892 0.9038 24 1 -0.3634 0.5381 -0.8755 25 1 -0.3634 -1.0272 -0.0283 26 1 1.8932 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 2.5830 0.3788 3.5690 29 1 0.7184 1.8216 -1.5323 30 1 4.4907 2.6373 -3.0204 31 1 3.3731 3.8482 -2.3469 32 1 4.2561 2.7497 -1.2597 33 1 -0.1122 3.9626 -5.2294 34 1 0.2626 2.2593 -7.0014 35 1 1.7765 0.3488 -6.5122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930694746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = 26.805286 kcal Electronic energy + Delta-G solvation = -16708.401793 eV Core-core repulsion = 14126.684518 eV Total energy + Delta-G solvation = -2581.717275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98919 -38.64969 -35.49928 -34.63132 -33.44657 -31.99122 -30.02466 -28.03662 -25.83407 -25.48794 -24.91509 -22.44670 -20.84083 -18.65409 -18.40401 -17.61330 -16.72835 -16.50845 -15.98896 -15.87055 -15.41272 -14.65173 -14.46109 -14.40862 -14.25516 -13.94261 -13.23727 -13.04753 -12.81894 -12.57416 -12.47620 -12.40443 -11.92929 -11.82007 -11.74763 -11.54259 -11.40637 -10.96414 -10.42145 -10.40043 -10.11932 -8.96019 -8.03437 -6.11162 -0.04590 0.24763 1.43419 1.46080 1.57815 2.47407 2.82871 2.88788 3.20976 3.25799 3.78517 3.81481 4.07895 4.27257 4.34599 4.42089 4.48767 4.56080 4.57946 4.69818 4.79955 4.90538 4.97334 5.08198 5.28248 5.37095 5.39720 5.50855 5.63694 5.73426 5.85451 6.14858 6.32504 6.67252 6.76936 6.99978 7.23048 7.56116 9.02745 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038694 B = 0.006236 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.451850 B = 4489.141556 C = 4545.997115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.140 4.140 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.662 5.662 14 C 0.150 3.850 15 H 0.044 0.956 16 C -0.118 4.118 17 C 0.305 3.695 18 N -0.521 5.521 19 C 0.130 3.870 20 C -0.214 4.214 21 C 0.131 3.869 22 N -0.546 5.546 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.198 0.802 34 H 0.192 0.808 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 1.587 -17.263 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.294 5.294 14 C 0.038 3.962 15 H 0.062 0.938 16 C -0.177 4.177 17 C 0.037 3.963 18 N -0.236 5.236 19 C -0.035 4.035 20 C -0.235 4.235 21 C -0.034 4.034 22 N -0.261 5.261 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.215 0.785 34 H 0.209 0.791 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.753 2.016 -16.071 16.429 hybrid contribution -0.690 -0.646 0.080 0.949 sum -3.444 1.370 -15.991 16.415 Atomic orbital electron populations 1.21423 0.96136 0.99230 1.00553 1.21978 0.96330 1.00351 0.99298 1.19042 0.94071 0.89114 0.86453 0.97652 1.21251 1.30310 1.11241 0.90647 0.93053 1.25578 0.95929 0.95896 1.00979 1.70015 1.39928 1.25015 1.21195 0.85584 0.78180 0.78765 0.79557 1.19492 1.20753 1.20956 1.60833 1.03735 1.62488 1.02382 1.20144 0.93325 0.97978 0.84712 0.93833 1.21615 0.95961 0.98824 1.01306 1.22990 0.91479 0.86413 0.95417 1.68283 1.08517 1.22861 1.23898 1.24009 0.93792 0.98546 0.87198 1.23346 1.00755 0.95913 1.03504 1.23935 0.89724 0.97102 0.92616 1.68234 1.25565 1.28510 1.03748 0.93495 0.94330 0.93751 0.96260 0.91469 0.93180 0.85337 0.91843 0.92171 0.92905 0.78512 0.79110 0.78193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.40 71.98 0.68 -4.44 16 2 C -0.14 -6.87 5.49 30.59 0.17 -6.70 16 3 C 0.22 11.46 2.14 44.17 0.09 11.56 16 4 H 0.01 0.32 7.13 -2.39 -0.02 0.30 16 5 C -0.50 -27.68 7.39 25.60 0.19 -27.49 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.79 5.28 84.66 0.45 1.24 16 8 N -0.92 -53.26 11.37 21.45 0.24 -53.02 16 9 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.66 -30.03 5.86 -477.16 -2.79 -32.83 16 14 C 0.15 6.03 2.81 44.17 0.12 6.15 16 15 H 0.04 1.87 7.09 -2.39 -0.02 1.86 16 16 C -0.12 -4.42 9.38 71.98 0.68 -3.74 16 17 C 0.31 10.67 6.27 138.75 0.87 11.54 16 18 N -0.52 -16.85 10.04 -187.85 -1.89 -18.74 16 19 C 0.13 2.81 11.31 84.70 0.96 3.77 16 20 C -0.21 -3.44 10.17 22.44 0.23 -3.21 16 21 C 0.13 2.70 11.31 84.70 0.96 3.66 16 22 N -0.55 -16.96 10.32 -187.85 -1.94 -18.90 16 23 H 0.05 2.24 7.12 -2.38 -0.02 2.22 16 24 H 0.04 1.58 6.36 -2.39 -0.02 1.57 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.02 0.88 7.40 -2.39 -0.02 0.86 16 27 H 0.07 3.69 6.21 -2.39 -0.01 3.67 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.33 14.71 6.07 -89.70 -0.54 14.17 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.12 7.44 -2.38 -0.02 2.10 16 33 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.20 2.42 8.06 -2.92 -0.02 2.40 16 Total: -1.00 -66.95 288.94 1.58 -65.37 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.54 Total: 19.17 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.39 Total: -7.67 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -6.37 Total: -123.47 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.95 1.58 -65.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.178 kcal (2) G-P(sol) polarization free energy of solvation -66.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds