Wall clock time and date at job start Sun Mar 29 2020 22:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 H 1.09001 * 109.47351 * 179.58939 * 3 2 1 5 5 C 1.50710 * 109.46714 * 299.58589 * 3 2 1 6 6 H 1.07991 * 119.99946 * 119.99958 * 5 3 2 7 7 C 1.37871 * 119.99851 * 299.99697 * 5 3 2 8 8 N 1.31513 * 120.00171 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46875 * 60.00141 * 9 7 5 11 11 H 1.48497 * 109.46947 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46880 * 300.00218 * 9 7 5 13 13 N 1.46901 * 109.47175 * 59.57993 * 3 2 1 14 14 C 1.46904 * 110.99360 * 85.73491 * 13 3 2 15 15 H 1.08997 * 109.47130 * 327.01944 * 14 13 3 16 16 C 1.52999 * 109.47452 * 87.02678 * 14 13 3 17 17 C 1.50703 * 109.46665 * 207.02627 * 14 13 3 18 18 N 1.31795 * 119.12105 * 134.99614 * 17 14 13 19 19 C 1.32333 * 120.82230 * 179.97438 * 18 17 14 20 20 C 1.38601 * 119.09935 * 0.02562 * 19 18 17 21 21 C 1.38594 * 118.40239 * 0.02562 * 20 19 18 22 22 N 1.31796 * 119.12425 * 315.02533 * 17 14 13 23 23 H 1.08997 * 109.47227 * 56.29978 * 1 2 3 24 24 H 1.08995 * 109.47441 * 176.30461 * 1 2 3 25 25 H 1.08999 * 109.46614 * 296.30591 * 1 2 3 26 26 H 1.09001 * 109.47314 * 239.99785 * 2 1 3 27 27 H 1.09003 * 109.46929 * 119.99483 * 2 1 3 28 28 H 0.97005 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00014 * 209.68010 * 13 3 2 30 30 H 1.08994 * 109.47295 * 300.00073 * 16 14 13 31 31 H 1.09008 * 109.46852 * 59.99724 * 16 14 13 32 32 H 1.09001 * 109.47205 * 179.97438 * 16 14 13 33 33 H 1.07996 * 120.45128 * 179.72840 * 19 18 17 34 34 H 1.07996 * 120.79689 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.45072 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 0.0074 5 6 1.5461 2.1499 -1.2357 6 1 0.9246 3.0282 -1.1430 7 6 1.8877 1.6758 -2.4844 8 7 2.6442 0.6060 -2.5973 9 14 1.2761 2.5530 -4.0160 10 1 1.7716 3.9528 -4.0158 11 1 1.7787 1.8496 -5.2234 12 1 -0.2089 2.5536 -4.0263 13 7 1.5422 2.1380 1.1943 14 6 2.4275 1.9090 2.3441 15 1 2.8608 0.9112 2.2759 16 6 3.5465 2.9523 2.3419 17 6 1.6341 2.0260 3.6200 18 7 1.8018 1.1224 4.5647 19 6 1.1230 1.1928 5.6985 20 6 0.2268 2.2337 5.8840 21 6 0.0770 3.1637 4.8675 22 7 0.7905 3.0287 3.7612 23 1 -0.3633 0.5702 -0.8549 24 1 -0.3634 -1.0255 -0.0662 25 1 -0.3632 0.4554 0.9213 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.8843 0.2722 -3.4759 29 1 1.4279 3.1246 1.0169 30 1 4.1203 2.8678 1.4191 31 1 3.1131 3.9502 2.4101 32 1 4.2031 2.7827 3.1953 33 1 1.2620 0.4467 6.4668 34 1 -0.3418 2.3174 6.7984 35 1 -0.6119 3.9883 4.9771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930694747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:27 Heat of formation + Delta-G solvation = 42.996401 kcal Electronic energy + Delta-G solvation = -16702.173836 eV Core-core repulsion = 14121.158661 eV Total energy + Delta-G solvation = -2581.015175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77860 -36.79710 -33.80668 -33.45477 -31.59418 -30.64121 -28.39821 -25.83626 -24.53457 -24.24533 -23.08250 -21.09121 -18.88645 -17.31889 -16.94989 -16.10841 -15.15060 -14.85569 -14.71730 -13.88499 -13.82322 -13.48344 -13.22710 -12.78705 -12.39446 -11.93495 -11.75393 -11.64182 -10.90919 -10.83938 -10.77990 -10.60239 -10.48378 -10.29018 -10.05440 -9.72267 -9.36002 -9.28435 -8.97016 -8.74424 -8.43437 -7.20555 -5.98326 -4.03475 1.10771 1.30576 3.33796 3.38349 3.41280 3.98246 4.17214 4.38583 4.45528 4.70736 5.09212 5.23011 5.31961 5.42401 5.53780 5.66056 5.82810 5.87583 6.19249 6.36948 6.47177 6.57964 6.67126 6.73159 6.90632 7.23034 7.29202 7.35778 7.53362 7.77857 7.83489 7.87882 8.31541 8.38576 8.46445 8.71059 9.06138 9.61018 11.07588 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.006253 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.480428 B = 4476.425446 C = 4536.701630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.147 3.853 15 H 0.097 0.903 16 C -0.169 4.169 17 C 0.352 3.648 18 N -0.521 5.521 19 C 0.144 3.856 20 C -0.249 4.249 21 C 0.145 3.855 22 N -0.497 5.497 23 H 0.056 0.944 24 H 0.012 0.988 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 2.858 14.112 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.302 5.302 14 C 0.034 3.966 15 H 0.115 0.885 16 C -0.229 4.229 17 C 0.084 3.916 18 N -0.235 5.235 19 C -0.023 4.023 20 C -0.271 4.271 21 C -0.022 4.022 22 N -0.210 5.210 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.184 2.147 13.262 13.611 hybrid contribution -0.227 0.977 -0.102 1.008 sum -2.411 3.124 13.160 13.739 Atomic orbital electron populations 1.21424 0.97650 0.97247 1.01181 1.21469 0.94948 0.98364 0.99502 1.19166 0.93103 0.91323 0.85349 0.97805 1.21132 1.31629 1.11978 0.90230 0.92282 1.24866 0.95057 0.95002 0.98848 1.69876 1.36577 1.22636 1.23685 0.86635 0.79214 0.79636 0.82366 1.20378 1.21400 1.20274 1.60548 1.47852 1.16847 1.04984 1.20203 0.89711 1.00167 0.86500 0.88512 1.22411 0.98767 0.99387 1.02304 1.23535 0.89646 0.84342 0.94065 1.68270 1.25524 1.27724 1.02020 1.23153 0.89768 0.95285 0.94056 1.22801 1.03116 0.98803 1.02379 1.23250 0.94313 0.96626 0.88031 1.68286 1.06427 1.23428 1.22874 0.92502 0.96892 0.94299 0.89398 0.97147 0.92929 0.84021 0.90946 0.92178 0.93233 0.82080 0.84179 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.52 37.16 0.35 -2.40 16 2 C -0.10 -2.59 5.57 -26.73 -0.15 -2.73 16 3 C 0.22 5.40 2.11 -68.86 -0.15 5.26 16 4 H 0.00 0.12 7.27 -51.93 -0.38 -0.26 16 5 C -0.51 -13.67 7.29 -34.44 -0.25 -13.92 16 6 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.48 5.14 -102.16 -0.53 -15.00 16 14 C 0.15 2.82 2.79 -68.86 -0.19 2.62 16 15 H 0.10 1.98 7.15 -51.93 -0.37 1.60 16 16 C -0.17 -2.86 9.13 37.16 0.34 -2.52 16 17 C 0.35 6.29 6.60 -157.19 -1.04 5.25 16 18 N -0.52 -8.68 10.32 -10.72 -0.11 -8.79 16 19 C 0.14 1.81 11.31 -17.20 -0.19 1.61 16 20 C -0.25 -2.71 10.17 -39.32 -0.40 -3.11 16 21 C 0.14 1.85 11.30 -17.20 -0.19 1.66 16 22 N -0.50 -8.35 10.11 -10.72 -0.11 -8.46 16 23 H 0.06 1.41 7.10 -51.93 -0.37 1.05 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16 26 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 27 H 0.01 0.24 7.51 -51.93 -0.39 -0.15 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.34 7.38 7.91 -39.29 -0.31 7.07 16 30 H 0.07 1.28 7.59 -51.93 -0.39 0.89 16 31 H 0.06 0.99 8.13 -51.92 -0.42 0.56 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -29.68 291.62 -7.71 -37.39 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.00 Total: 5.36 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.96 Total: -6.63 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.12 Total: -56.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.68 -7.71 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds