Wall clock time and date at job start Sun Mar 29 2020 22:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 H 1.09001 * 109.47351 * 179.58939 * 3 2 1 5 5 C 1.50710 * 109.46714 * 299.58589 * 3 2 1 6 6 H 1.07991 * 119.99946 * 119.99958 * 5 3 2 7 7 C 1.37871 * 119.99851 * 299.99697 * 5 3 2 8 8 N 1.31513 * 120.00171 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46875 * 60.00141 * 9 7 5 11 11 H 1.48497 * 109.46947 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46880 * 300.00218 * 9 7 5 13 13 N 1.46901 * 109.47175 * 59.57993 * 3 2 1 14 14 C 1.46904 * 110.99360 * 85.73491 * 13 3 2 15 15 H 1.08997 * 109.47130 * 327.01944 * 14 13 3 16 16 C 1.52999 * 109.47452 * 87.02678 * 14 13 3 17 17 C 1.50703 * 109.46665 * 207.02627 * 14 13 3 18 18 N 1.31795 * 119.12105 * 134.99614 * 17 14 13 19 19 C 1.32333 * 120.82230 * 179.97438 * 18 17 14 20 20 C 1.38601 * 119.09935 * 0.02562 * 19 18 17 21 21 C 1.38594 * 118.40239 * 0.02562 * 20 19 18 22 22 N 1.31796 * 119.12425 * 315.02533 * 17 14 13 23 23 H 1.08997 * 109.47227 * 56.29978 * 1 2 3 24 24 H 1.08995 * 109.47441 * 176.30461 * 1 2 3 25 25 H 1.08999 * 109.46614 * 296.30591 * 1 2 3 26 26 H 1.09001 * 109.47314 * 239.99785 * 2 1 3 27 27 H 1.09003 * 109.46929 * 119.99483 * 2 1 3 28 28 H 0.97005 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00014 * 209.68010 * 13 3 2 30 30 H 1.08994 * 109.47295 * 300.00073 * 16 14 13 31 31 H 1.09008 * 109.46852 * 59.99724 * 16 14 13 32 32 H 1.09001 * 109.47205 * 179.97438 * 16 14 13 33 33 H 1.07996 * 120.45128 * 179.72840 * 19 18 17 34 34 H 1.07996 * 120.79689 * 179.97438 * 20 19 18 35 35 H 1.07999 * 120.45072 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 0.0074 5 6 1.5461 2.1499 -1.2357 6 1 0.9246 3.0282 -1.1430 7 6 1.8877 1.6758 -2.4844 8 7 2.6442 0.6060 -2.5973 9 14 1.2761 2.5530 -4.0160 10 1 1.7716 3.9528 -4.0158 11 1 1.7787 1.8496 -5.2234 12 1 -0.2089 2.5536 -4.0263 13 7 1.5422 2.1380 1.1943 14 6 2.4275 1.9090 2.3441 15 1 2.8608 0.9112 2.2759 16 6 3.5465 2.9523 2.3419 17 6 1.6341 2.0260 3.6200 18 7 1.8018 1.1224 4.5647 19 6 1.1230 1.1928 5.6985 20 6 0.2268 2.2337 5.8840 21 6 0.0770 3.1637 4.8675 22 7 0.7905 3.0287 3.7612 23 1 -0.3633 0.5702 -0.8549 24 1 -0.3634 -1.0255 -0.0662 25 1 -0.3632 0.4554 0.9213 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.8843 0.2722 -3.4759 29 1 1.4279 3.1246 1.0169 30 1 4.1203 2.8678 1.4191 31 1 3.1131 3.9502 2.4101 32 1 4.2031 2.7827 3.1953 33 1 1.2620 0.4467 6.4668 34 1 -0.3418 2.3174 6.7984 35 1 -0.6119 3.9883 4.9771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930694747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:26 Heat of formation + Delta-G solvation = 23.393133 kcal Electronic energy + Delta-G solvation = -16703.023898 eV Core-core repulsion = 14121.158661 eV Total energy + Delta-G solvation = -2581.865237 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.87893 -38.51829 -35.52912 -34.55099 -33.35766 -32.11871 -30.06092 -27.74690 -25.78574 -25.43368 -24.92240 -22.52052 -20.76544 -18.75380 -18.25286 -17.55468 -16.83439 -16.24323 -15.93033 -15.67625 -15.27931 -14.97079 -14.56829 -14.25855 -13.96601 -13.84640 -13.53841 -13.14385 -12.78802 -12.57570 -12.48712 -12.20683 -11.93489 -11.80873 -11.73226 -11.48043 -11.34321 -10.80315 -10.51423 -10.33317 -10.06521 -8.98010 -8.06798 -6.18595 0.05690 0.31145 1.44820 1.46174 1.53357 2.44685 2.85639 3.01013 3.21617 3.34232 3.85937 3.90605 4.13937 4.23224 4.32799 4.36091 4.52347 4.63251 4.75754 4.77722 4.84121 4.94276 4.98448 5.15411 5.29597 5.40339 5.54090 5.58033 5.73470 5.79907 5.87597 6.21890 6.29041 6.52724 6.80039 7.05833 7.30355 7.49780 8.98382 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038693 B = 0.006253 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.480428 B = 4476.425446 C = 4536.701630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.099 4.099 3 C 0.226 3.774 4 H -0.027 1.027 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.666 5.666 14 C 0.148 3.852 15 H 0.074 0.926 16 C -0.157 4.157 17 C 0.328 3.672 18 N -0.550 5.550 19 C 0.131 3.869 20 C -0.222 4.222 21 C 0.130 3.870 22 N -0.525 5.525 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.013 0.987 28 H 0.261 0.739 29 H 0.339 0.661 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 3.587 15.948 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.138 4.138 3 C 0.118 3.882 4 H -0.009 1.009 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.297 5.297 14 C 0.036 3.964 15 H 0.092 0.908 16 C -0.216 4.216 17 C 0.059 3.941 18 N -0.265 5.265 19 C -0.034 4.034 20 C -0.244 4.244 21 C -0.035 4.035 22 N -0.240 5.240 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.215 0.785 34 H 0.205 0.795 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.686 2.885 15.132 15.840 hybrid contribution 0.204 0.741 -0.497 0.915 sum -3.483 3.627 14.636 15.475 Atomic orbital electron populations 1.21255 0.96291 0.98117 1.00356 1.21348 0.96010 0.98118 0.98334 1.18914 0.91180 0.91677 0.86409 1.00909 1.21374 1.31478 1.11993 0.91215 0.92539 1.25594 0.95192 0.95628 1.01615 1.70009 1.37516 1.23811 1.24201 0.85666 0.78681 0.78719 0.78878 1.19698 1.21166 1.19898 1.60452 1.48524 1.16311 1.04440 1.20076 0.90237 0.99430 0.86695 0.90753 1.22258 0.98246 0.99027 1.02097 1.22951 0.91128 0.85973 0.94001 1.68193 1.27060 1.27914 1.03353 1.23876 0.89383 0.96685 0.93422 1.23278 1.01421 0.96542 1.03114 1.23934 0.94106 0.98101 0.87379 1.68195 1.07145 1.23470 1.25144 0.94251 0.95008 0.94089 0.91939 0.96803 0.92998 0.84273 0.92564 0.91691 0.91620 0.78485 0.79453 0.78722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.82 9.52 71.98 0.69 -4.13 16 2 C -0.10 -5.06 5.57 30.60 0.17 -4.89 16 3 C 0.23 11.61 2.11 44.17 0.09 11.71 16 4 H -0.03 -1.50 7.27 -2.39 -0.02 -1.52 16 5 C -0.52 -28.47 7.29 25.60 0.19 -28.29 16 6 H 0.06 3.05 7.61 -2.92 -0.02 3.03 16 7 C 0.02 1.04 5.30 84.65 0.45 1.49 16 8 N -0.92 -52.76 11.32 21.44 0.24 -52.51 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.67 -29.49 5.14 -477.12 -2.45 -31.94 16 14 C 0.15 5.83 2.79 44.17 0.12 5.95 16 15 H 0.07 3.19 7.15 -2.39 -0.02 3.18 16 16 C -0.16 -5.44 9.13 71.98 0.66 -4.78 16 17 C 0.33 11.62 6.60 138.75 0.92 12.53 16 18 N -0.55 -17.76 10.32 -187.84 -1.94 -19.70 16 19 C 0.13 2.90 11.31 84.70 0.96 3.86 16 20 C -0.22 -3.90 10.17 22.44 0.23 -3.67 16 21 C 0.13 2.94 11.30 84.70 0.96 3.89 16 22 N -0.53 -17.03 10.11 -187.84 -1.90 -18.93 16 23 H 0.04 1.95 7.10 -2.39 -0.02 1.93 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.87 7.71 -2.39 -0.02 1.85 16 26 H 0.06 3.51 6.06 -2.39 -0.01 3.49 16 27 H 0.01 0.66 7.51 -2.39 -0.02 0.64 16 28 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 29 H 0.34 15.03 7.91 -89.69 -0.71 14.32 16 30 H 0.06 2.09 7.59 -2.39 -0.02 2.07 16 31 H 0.06 2.16 8.13 -2.38 -0.02 2.14 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.20 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -65.60 291.62 1.77 -63.83 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.37 Total: 19.84 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.42 Total: -6.31 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.05 Total: -123.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.60 1.77 -63.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.223 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds