Wall clock time and date at job start Sun Mar 29 2020 22:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46821 * 2 1 4 4 H 1.09003 * 109.46771 * 305.64275 * 3 2 1 5 5 C 1.50702 * 109.47088 * 185.64385 * 3 2 1 6 6 H 1.07998 * 120.00008 * 239.99861 * 5 3 2 7 7 C 1.37879 * 119.99869 * 60.00165 * 5 3 2 8 8 N 1.31514 * 119.99892 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99800 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47511 * 89.99954 * 9 7 5 11 11 H 1.48511 * 109.46742 * 209.99648 * 9 7 5 12 12 H 1.48498 * 109.47434 * 329.99440 * 9 7 5 13 13 N 1.46896 * 109.46936 * 65.64361 * 3 2 1 14 14 C 1.46906 * 110.99924 * 204.30234 * 13 3 2 15 15 H 1.08995 * 109.47171 * 326.27553 * 14 13 3 16 16 C 1.52998 * 109.46917 * 86.27850 * 14 13 3 17 17 C 1.50701 * 109.47060 * 206.27667 * 14 13 3 18 18 N 1.31796 * 119.12437 * 314.72539 * 17 14 13 19 19 C 1.32330 * 120.81774 * 179.76304 * 18 17 14 20 20 C 1.38592 * 119.10413 * 0.50471 * 19 18 17 21 21 C 1.38594 * 118.39900 * 359.75401 * 20 19 18 22 22 N 1.31797 * 119.11907 * 135.00394 * 17 14 13 23 23 H 1.09003 * 109.46763 * 173.71452 * 1 2 3 24 24 H 1.08999 * 109.47073 * 293.71427 * 1 2 3 25 25 H 1.08995 * 109.46996 * 53.71630 * 1 2 3 26 26 H 1.08994 * 109.47412 * 119.99580 * 2 1 3 27 27 H 1.09001 * 109.47129 * 240.00135 * 2 1 3 28 28 H 0.97006 * 120.00136 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00709 * 328.25857 * 13 3 2 30 30 H 1.09002 * 109.47838 * 64.50536 * 16 14 13 31 31 H 1.08995 * 109.47143 * 184.51157 * 16 14 13 32 32 H 1.09008 * 109.46815 * 304.50365 * 16 14 13 33 33 H 1.08003 * 120.44531 * 180.28259 * 19 18 17 34 34 H 1.08003 * 120.80368 * 179.77213 * 20 19 18 35 35 H 1.08008 * 120.44753 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9847 -0.8352 5 6 3.5405 1.4450 -0.1397 6 1 4.1540 1.8867 0.6316 7 6 4.1302 0.8833 -1.2523 8 7 3.3831 0.3450 -2.1913 9 14 5.9901 0.8856 -1.4252 10 1 6.5456 -0.3487 -0.8144 11 1 6.3534 0.9323 -2.8644 12 1 6.5500 2.0749 -0.7345 13 7 1.6647 2.0946 1.2617 14 6 1.6001 3.5535 1.1015 15 1 2.3545 3.8738 0.3830 16 6 0.2120 3.9499 0.5947 17 6 1.8581 4.2165 2.4300 18 7 1.2536 3.7540 3.5060 19 6 1.4594 4.3078 4.6901 20 6 2.3151 5.3936 4.7869 21 6 2.9282 5.8547 3.6326 22 7 2.6780 5.2470 2.4840 23 1 -0.3633 -1.0215 -0.1125 24 1 -0.3633 0.4133 0.9409 25 1 -0.3633 0.6081 -0.8284 26 1 1.8934 -0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.7979 -0.0499 -2.9743 29 1 0.7911 1.7302 1.6112 30 1 -0.5348 3.7017 1.3489 31 1 0.1890 5.0220 0.3996 32 1 -0.0071 3.4084 -0.3256 33 1 0.9643 3.9210 5.5686 34 1 2.5001 5.8689 5.7389 35 1 3.6016 6.6984 3.6701 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930694749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:30 Heat of formation + Delta-G solvation = 43.197979 kcal Electronic energy + Delta-G solvation = -16679.087558 eV Core-core repulsion = 14098.081124 eV Total energy + Delta-G solvation = -2581.006434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71741 -36.83530 -33.72424 -33.39446 -31.75133 -30.75147 -28.45997 -26.06281 -24.55692 -24.19866 -22.72922 -20.75381 -19.54807 -17.16986 -16.73654 -16.14594 -15.25548 -14.81359 -14.68032 -13.97666 -13.94575 -13.39097 -13.28451 -12.74861 -12.50539 -12.13248 -11.70144 -11.53619 -11.11171 -10.85028 -10.72616 -10.56031 -10.54783 -10.44330 -9.91049 -9.71809 -9.60228 -9.26179 -8.99666 -8.90733 -8.30296 -7.19935 -5.92392 -3.96051 1.16818 1.36598 3.36265 3.42298 3.47704 4.03990 4.24857 4.43747 4.51080 4.75936 5.14185 5.28304 5.34809 5.44456 5.57322 5.70151 5.88542 5.92074 6.20299 6.22665 6.22986 6.39912 6.48463 6.54403 6.73485 6.90561 7.12963 7.22349 7.30337 7.54064 7.83087 7.97613 8.30178 8.43822 8.49262 8.82605 9.11976 9.68868 11.12802 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.007897 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.554004 B = 3544.766256 C = 4311.848701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.220 3.780 4 H 0.006 0.994 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.153 3.847 15 H 0.109 0.891 16 C -0.170 4.170 17 C 0.353 3.647 18 N -0.501 5.501 19 C 0.143 3.857 20 C -0.250 4.250 21 C 0.144 3.856 22 N -0.517 5.517 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 8.079 10.166 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.531 4.531 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.304 5.304 14 C 0.040 3.960 15 H 0.127 0.873 16 C -0.230 4.230 17 C 0.086 3.914 18 N -0.214 5.214 19 C -0.023 4.023 20 C -0.272 4.272 21 C -0.022 4.022 22 N -0.231 5.231 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.158 0.842 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.546 7.536 9.335 12.830 hybrid contribution 0.466 0.513 0.401 0.800 sum -4.080 8.049 9.736 13.275 Atomic orbital electron populations 1.21886 0.99535 0.99713 0.99628 1.21751 0.91297 1.00175 1.03071 1.19207 0.95400 0.90020 0.84072 0.97673 1.21219 0.91318 1.36404 1.04158 0.92250 1.24930 0.97998 0.95660 0.95837 1.69870 1.34592 1.39588 1.09575 0.86570 0.85980 0.78370 0.76926 1.20856 1.21395 1.19991 1.60500 1.36635 1.00184 1.33119 1.20154 0.97110 0.90299 0.88427 0.87320 1.22437 0.97342 1.01410 1.01845 1.23550 0.85790 0.86986 0.95074 1.68266 1.24690 1.29438 0.99046 1.23215 0.92575 0.90647 0.95911 1.22785 1.02161 1.01151 1.01076 1.23171 0.94503 0.96740 0.87818 1.68295 1.15820 1.09970 1.28995 0.94438 0.94456 0.93868 0.94064 0.88197 0.93120 0.85345 0.92527 0.92921 0.91245 0.82130 0.84230 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.63 37.16 0.36 -2.56 16 2 C -0.12 -2.95 5.37 -26.72 -0.14 -3.09 16 3 C 0.22 5.48 1.83 -68.86 -0.13 5.35 16 4 H 0.01 0.15 7.19 -51.93 -0.37 -0.22 16 5 C -0.49 -13.78 8.46 -34.44 -0.29 -14.08 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -25.56 11.29 55.43 0.63 -24.93 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.67 -14.75 5.85 -102.17 -0.60 -15.34 16 14 C 0.15 3.07 2.79 -68.86 -0.19 2.88 16 15 H 0.11 2.45 7.57 -51.93 -0.39 2.06 16 16 C -0.17 -2.90 9.14 37.16 0.34 -2.56 16 17 C 0.35 6.64 6.59 -157.19 -1.04 5.61 16 18 N -0.50 -8.62 10.11 -10.72 -0.11 -8.73 16 19 C 0.14 1.89 11.30 -17.21 -0.19 1.70 16 20 C -0.25 -2.87 10.17 -39.32 -0.40 -3.27 16 21 C 0.14 1.94 11.30 -17.20 -0.19 1.75 16 22 N -0.52 -9.20 10.32 -10.72 -0.11 -9.31 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.66 6.67 -51.93 -0.35 0.31 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.73 6.34 -39.29 -0.25 6.48 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.21 7.47 -51.92 -0.39 0.82 16 33 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -30.63 292.50 -7.76 -38.39 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.99 Total: 5.40 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.98 Total: -6.80 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.19 Total: -58.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.63 -7.76 -38.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.592 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds