Wall clock time and date at job start Sun Mar 29 2020 22:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46821 * 2 1 4 4 H 1.09003 * 109.46771 * 305.64275 * 3 2 1 5 5 C 1.50702 * 109.47088 * 185.64385 * 3 2 1 6 6 H 1.07998 * 120.00008 * 239.99861 * 5 3 2 7 7 C 1.37879 * 119.99869 * 60.00165 * 5 3 2 8 8 N 1.31514 * 119.99892 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99800 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47511 * 89.99954 * 9 7 5 11 11 H 1.48511 * 109.46742 * 209.99648 * 9 7 5 12 12 H 1.48498 * 109.47434 * 329.99440 * 9 7 5 13 13 N 1.46896 * 109.46936 * 65.64361 * 3 2 1 14 14 C 1.46906 * 110.99924 * 204.30234 * 13 3 2 15 15 H 1.08995 * 109.47171 * 326.27553 * 14 13 3 16 16 C 1.52998 * 109.46917 * 86.27850 * 14 13 3 17 17 C 1.50701 * 109.47060 * 206.27667 * 14 13 3 18 18 N 1.31796 * 119.12437 * 314.72539 * 17 14 13 19 19 C 1.32330 * 120.81774 * 179.76304 * 18 17 14 20 20 C 1.38592 * 119.10413 * 0.50471 * 19 18 17 21 21 C 1.38594 * 118.39900 * 359.75401 * 20 19 18 22 22 N 1.31797 * 119.11907 * 135.00394 * 17 14 13 23 23 H 1.09003 * 109.46763 * 173.71452 * 1 2 3 24 24 H 1.08999 * 109.47073 * 293.71427 * 1 2 3 25 25 H 1.08995 * 109.46996 * 53.71630 * 1 2 3 26 26 H 1.08994 * 109.47412 * 119.99580 * 2 1 3 27 27 H 1.09001 * 109.47129 * 240.00135 * 2 1 3 28 28 H 0.97006 * 120.00136 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00709 * 328.25857 * 13 3 2 30 30 H 1.09002 * 109.47838 * 64.50536 * 16 14 13 31 31 H 1.08995 * 109.47143 * 184.51157 * 16 14 13 32 32 H 1.09008 * 109.46815 * 304.50365 * 16 14 13 33 33 H 1.08003 * 120.44531 * 180.28259 * 19 18 17 34 34 H 1.08003 * 120.80368 * 179.77213 * 20 19 18 35 35 H 1.08008 * 120.44753 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9847 -0.8352 5 6 3.5405 1.4450 -0.1397 6 1 4.1540 1.8867 0.6316 7 6 4.1302 0.8833 -1.2523 8 7 3.3831 0.3450 -2.1913 9 14 5.9901 0.8856 -1.4252 10 1 6.5456 -0.3487 -0.8144 11 1 6.3534 0.9323 -2.8644 12 1 6.5500 2.0749 -0.7345 13 7 1.6647 2.0946 1.2617 14 6 1.6001 3.5535 1.1015 15 1 2.3545 3.8738 0.3830 16 6 0.2120 3.9499 0.5947 17 6 1.8581 4.2165 2.4300 18 7 1.2536 3.7540 3.5060 19 6 1.4594 4.3078 4.6901 20 6 2.3151 5.3936 4.7869 21 6 2.9282 5.8547 3.6326 22 7 2.6780 5.2470 2.4840 23 1 -0.3633 -1.0215 -0.1125 24 1 -0.3633 0.4133 0.9409 25 1 -0.3633 0.6081 -0.8284 26 1 1.8934 -0.5137 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.7979 -0.0499 -2.9743 29 1 0.7911 1.7302 1.6112 30 1 -0.5348 3.7017 1.3489 31 1 0.1890 5.0220 0.3996 32 1 -0.0071 3.4084 -0.3256 33 1 0.9643 3.9210 5.5686 34 1 2.5001 5.8689 5.7389 35 1 3.6016 6.6984 3.6701 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930694749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:29 Heat of formation + Delta-G solvation = 22.219345 kcal Electronic energy + Delta-G solvation = -16679.997260 eV Core-core repulsion = 14098.081124 eV Total energy + Delta-G solvation = -2581.916136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87534 -38.56271 -35.43243 -34.55034 -33.65371 -32.08939 -30.08249 -28.02061 -25.84903 -25.33501 -24.53984 -22.16515 -21.46145 -18.43472 -18.23751 -17.89856 -16.76091 -16.39338 -15.90750 -15.79677 -15.34716 -14.96056 -14.42941 -14.33310 -14.16704 -13.62930 -13.44028 -13.12278 -12.90899 -12.76236 -12.54291 -12.23291 -11.97609 -11.79578 -11.73294 -11.51322 -11.35700 -11.05327 -10.42681 -10.32062 -10.07007 -8.99781 -8.06583 -6.17966 0.05909 0.31332 1.39078 1.39576 1.50450 2.43241 2.84681 3.02889 3.18352 3.33888 3.85519 3.91131 4.16270 4.24892 4.33158 4.38497 4.52466 4.55032 4.61108 4.72587 4.81050 4.89628 4.98788 5.11556 5.18565 5.28200 5.38998 5.57117 5.62213 5.75537 5.91204 6.21958 6.37525 6.49095 6.94477 7.02259 7.30435 7.50614 8.96221 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.007897 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.554004 B = 3544.766256 C = 4311.848701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.229 3.771 4 H -0.022 1.022 5 C -0.512 4.512 6 H 0.038 0.962 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.154 3.846 15 H 0.070 0.930 16 C -0.157 4.157 17 C 0.327 3.673 18 N -0.524 5.524 19 C 0.131 3.869 20 C -0.223 4.223 21 C 0.129 3.871 22 N -0.553 5.553 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.200 0.800 34 H 0.189 0.811 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 8.911 12.362 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.121 3.879 4 H -0.004 1.004 5 C -0.550 4.550 6 H 0.057 0.943 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.306 5.306 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.216 4.216 17 C 0.058 3.942 18 N -0.238 5.238 19 C -0.035 4.035 20 C -0.244 4.244 21 C -0.036 4.036 22 N -0.268 5.268 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.217 0.783 34 H 0.206 0.794 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.780 8.383 11.554 15.054 hybrid contribution 0.559 0.350 -0.152 0.677 sum -4.221 8.733 11.402 14.970 Atomic orbital electron populations 1.21742 0.96058 1.01174 1.00578 1.21574 0.94411 0.98713 1.01097 1.18944 0.93694 0.90733 0.84531 1.00401 1.21411 0.93009 1.36636 1.03983 0.94342 1.25597 1.02001 0.95339 0.95547 1.69979 1.36019 1.39782 1.09795 0.85669 0.81208 0.78228 0.77170 1.20182 1.20441 1.20288 1.60374 1.37245 1.01558 1.31419 1.19972 0.97475 0.89044 0.89376 0.91217 1.22279 0.95917 1.01956 1.01496 1.23019 0.87899 0.88368 0.94868 1.68180 1.25287 1.30368 0.99971 1.23967 0.92934 0.91002 0.95575 1.23274 0.99350 0.99506 1.02255 1.23873 0.95045 0.97364 0.87337 1.68207 1.16413 1.10524 1.31635 0.92414 0.92533 0.94116 0.94862 0.91170 0.92956 0.84490 0.91225 0.91733 0.92245 0.78347 0.79367 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.63 71.98 0.69 -4.58 16 2 C -0.12 -5.77 5.37 30.60 0.16 -5.61 16 3 C 0.23 11.84 1.83 44.17 0.08 11.92 16 4 H -0.02 -1.21 7.19 -2.39 -0.02 -1.23 16 5 C -0.51 -29.78 8.46 25.60 0.22 -29.57 16 6 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 7 C 0.01 0.78 5.29 84.66 0.45 1.22 16 8 N -0.92 -53.45 11.29 21.45 0.24 -53.21 16 9 Si 0.95 45.82 29.54 68.60 2.03 47.85 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.67 -30.35 5.85 -477.14 -2.79 -33.14 16 14 C 0.15 6.41 2.79 44.17 0.12 6.53 16 15 H 0.07 3.38 7.57 -2.39 -0.02 3.36 16 16 C -0.16 -5.42 9.14 71.98 0.66 -4.76 16 17 C 0.33 12.33 6.59 138.75 0.91 13.24 16 18 N -0.52 -17.39 10.11 -187.84 -1.90 -19.29 16 19 C 0.13 3.04 11.30 84.70 0.96 4.00 16 20 C -0.22 -4.22 10.17 22.44 0.23 -3.99 16 21 C 0.13 3.16 11.30 84.70 0.96 4.11 16 22 N -0.55 -19.57 10.32 -187.84 -1.94 -21.51 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.93 6.67 -2.39 -0.02 1.91 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 3.83 5.94 -2.39 -0.01 3.81 16 28 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.34 13.84 6.34 -89.70 -0.57 13.27 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 2.13 7.47 -2.38 -0.02 2.11 16 33 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.31 292.50 1.59 -67.72 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.51 Total: 19.05 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.44 Total: -7.47 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -6.39 Total: -127.14 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.31 1.59 -67.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.935 kcal (2) G-P(sol) polarization free energy of solvation -69.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds