Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46742 * 2 1 4 4 H 1.08996 * 109.47410 * 55.02861 * 3 2 1 5 5 C 1.50710 * 109.46606 * 175.02528 * 3 2 1 6 6 H 1.07998 * 120.00006 * 120.00213 * 5 3 2 7 7 C 1.37881 * 119.99969 * 299.99929 * 5 3 2 8 8 N 1.31515 * 119.99931 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99886 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47227 * 89.99928 * 9 7 5 11 11 H 1.48496 * 109.47224 * 209.99981 * 9 7 5 12 12 H 1.48501 * 109.47004 * 330.00117 * 9 7 5 13 13 N 1.46893 * 109.47337 * 295.02081 * 3 2 1 14 14 C 1.46906 * 110.99870 * 156.12436 * 13 3 2 15 15 H 1.09000 * 109.46896 * 34.84338 * 14 13 3 16 16 C 1.53001 * 109.47082 * 274.84572 * 14 13 3 17 17 C 1.50699 * 109.47317 * 154.84521 * 14 13 3 18 18 N 1.31801 * 119.12046 * 44.72712 * 17 14 13 19 19 C 1.32340 * 120.81344 * 179.76179 * 18 17 14 20 20 C 1.38594 * 119.10601 * 0.50441 * 19 18 17 21 21 C 1.38593 * 118.39863 * 359.75114 * 20 19 18 22 22 N 1.31793 * 119.12556 * 225.00053 * 17 14 13 23 23 H 1.09004 * 109.47194 * 55.42989 * 1 2 3 24 24 H 1.08999 * 109.47355 * 295.42911 * 1 2 3 25 25 H 1.09003 * 109.47006 * 175.42585 * 1 2 3 26 26 H 1.09002 * 109.46843 * 120.00265 * 2 1 3 27 27 H 1.09003 * 109.47250 * 240.00078 * 2 1 3 28 28 H 0.97001 * 119.99549 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00439 * 280.07488 * 13 3 2 30 30 H 1.08998 * 109.47243 * 65.02629 * 16 14 13 31 31 H 1.08997 * 109.47335 * 185.02643 * 16 14 13 32 32 H 1.09010 * 109.47361 * 305.02678 * 16 14 13 33 33 H 1.07996 * 120.44337 * 180.27866 * 19 18 17 34 34 H 1.07993 * 120.80210 * 179.77637 * 20 19 18 35 35 H 1.08007 * 120.44793 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1469 1.8890 -0.6531 7 6 4.1438 0.8782 1.2271 8 7 3.4070 0.3371 2.1726 9 14 6.0054 0.8810 1.3801 10 1 6.4425 2.1138 2.0832 11 1 6.4404 -0.3101 2.1528 12 1 6.6135 0.8416 0.0258 13 7 1.6509 2.0994 -1.2549 14 6 1.5980 3.5584 -1.0910 15 1 2.3774 3.8746 -0.3979 16 6 0.2294 3.9600 -0.5373 17 6 1.8139 4.2221 -2.4266 18 7 1.1798 3.7566 -3.4842 19 6 1.3411 4.3168 -4.6723 20 6 2.1978 5.3992 -4.7966 21 6 2.8506 5.8567 -3.6629 22 7 2.6359 5.2491 -2.5071 23 1 -0.3634 0.5831 -0.8462 24 1 -0.3634 0.4413 0.9281 25 1 -0.3633 -1.0244 -0.0820 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8305 -0.0614 2.9490 29 1 2.2737 1.8424 -2.0059 30 1 0.1100 3.5530 0.4668 31 1 0.1575 5.0470 -0.4995 32 1 -0.5544 3.5663 -1.1845 33 1 0.8152 3.9333 -5.5340 34 1 2.3525 5.8748 -5.7537 35 1 3.5252 6.6982 -3.7219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930694750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = 41.926167 kcal Electronic energy + Delta-G solvation = -16680.893162 eV Core-core repulsion = 14099.831578 eV Total energy + Delta-G solvation = -2581.061584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83262 -36.63381 -33.70111 -33.49011 -31.67911 -30.70950 -28.72203 -25.97221 -24.51761 -24.24699 -22.66007 -20.55910 -19.37192 -17.25475 -16.97145 -16.40621 -15.27190 -14.86296 -14.60709 -14.22396 -13.77512 -13.37312 -13.23432 -12.70636 -12.08536 -12.00199 -11.43494 -11.31542 -11.11620 -11.05327 -10.71191 -10.65578 -10.61210 -10.36555 -10.08532 -9.59753 -9.52488 -9.28675 -8.99790 -8.97600 -8.33667 -7.23688 -5.96698 -4.09656 1.04804 1.27240 3.29205 3.36063 3.39454 3.96361 4.14620 4.34315 4.42755 4.68125 5.06046 5.19681 5.26904 5.40113 5.49105 5.84345 5.97488 6.10906 6.31869 6.46401 6.54416 6.59040 6.60121 6.79345 6.84362 7.16466 7.20823 7.26098 7.48200 7.62893 7.81251 8.11637 8.17737 8.30242 8.40938 8.67957 9.02399 9.57902 11.03044 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.007858 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.484013 B = 3562.320228 C = 4313.666851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.667 5.667 14 C 0.154 3.846 15 H 0.075 0.925 16 C -0.127 4.127 17 C 0.331 3.669 18 N -0.491 5.491 19 C 0.142 3.858 20 C -0.245 4.245 21 C 0.143 3.857 22 N -0.516 5.516 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.023 0.977 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 8.306 -10.682 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.297 5.297 14 C 0.042 3.958 15 H 0.093 0.907 16 C -0.186 4.186 17 C 0.063 3.937 18 N -0.205 5.205 19 C -0.025 4.025 20 C -0.267 4.267 21 C -0.024 4.024 22 N -0.230 5.230 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.181 0.819 34 H 0.159 0.841 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.544 7.673 -9.493 13.025 hybrid contribution 2.328 0.698 -0.839 2.571 sum -2.216 8.371 -10.332 13.481 Atomic orbital electron populations 1.21721 0.98893 0.98484 1.00513 1.21467 0.92228 0.98958 1.01608 1.19239 0.92698 0.91401 0.86077 0.94543 1.21875 0.92814 1.38225 1.05584 0.93084 1.24905 0.97836 0.94949 0.95672 1.69877 1.34757 1.38217 1.09378 0.86672 0.86210 0.77536 0.78043 1.20695 1.21145 1.20131 1.61017 1.56439 1.02702 1.09587 1.20199 0.98340 0.89997 0.87256 0.90740 1.21724 0.96149 0.98995 1.01747 1.23730 0.86268 0.88074 0.95586 1.68390 1.23299 1.29697 0.99082 1.23304 0.92793 0.90664 0.95716 1.22838 1.01629 1.00972 1.01288 1.23202 0.94675 0.96711 0.87792 1.68340 1.16750 1.09764 1.28107 0.92833 0.94565 0.95759 0.89153 0.95187 0.92887 0.85413 0.91480 0.93884 0.91884 0.81898 0.84074 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.16 0.37 -2.53 16 2 C -0.10 -2.52 5.45 -26.73 -0.15 -2.66 16 3 C 0.21 5.31 1.79 -68.86 -0.12 5.18 16 4 H 0.04 0.99 7.17 -51.93 -0.37 0.62 16 5 C -0.55 -14.92 8.21 -34.43 -0.28 -15.20 16 6 H 0.05 1.42 7.76 -52.49 -0.41 1.01 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 8 N -0.88 -25.03 11.30 55.43 0.63 -24.41 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -14.49 5.24 -102.17 -0.54 -15.02 16 14 C 0.15 3.09 2.82 -68.86 -0.19 2.89 16 15 H 0.07 1.68 7.57 -51.93 -0.39 1.28 16 16 C -0.13 -2.27 9.36 37.16 0.35 -1.93 16 17 C 0.33 6.04 6.27 -157.19 -0.99 5.06 16 18 N -0.49 -8.25 10.04 -10.72 -0.11 -8.36 16 19 C 0.14 1.80 11.30 -17.20 -0.19 1.60 16 20 C -0.25 -2.66 10.17 -39.32 -0.40 -3.06 16 21 C 0.14 1.83 11.30 -17.21 -0.19 1.64 16 22 N -0.52 -8.87 10.32 -10.72 -0.11 -8.98 16 23 H 0.05 1.09 7.63 -51.93 -0.40 0.69 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 7.43 8.00 -39.29 -0.31 7.11 16 30 H 0.07 1.23 7.49 -51.93 -0.39 0.84 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 294.35 15.07 4.44 4.44 Total: -1.00 -29.76 294.35 -7.71 -37.47 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.10 Total: 5.60 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.90 Total: -7.20 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.13 Total: -56.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.76 -7.71 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.395 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds