Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46742 * 2 1 4 4 H 1.08996 * 109.47410 * 55.02861 * 3 2 1 5 5 C 1.50710 * 109.46606 * 175.02528 * 3 2 1 6 6 H 1.07998 * 120.00006 * 120.00213 * 5 3 2 7 7 C 1.37881 * 119.99969 * 299.99929 * 5 3 2 8 8 N 1.31515 * 119.99931 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99886 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47227 * 89.99928 * 9 7 5 11 11 H 1.48496 * 109.47224 * 209.99981 * 9 7 5 12 12 H 1.48501 * 109.47004 * 330.00117 * 9 7 5 13 13 N 1.46893 * 109.47337 * 295.02081 * 3 2 1 14 14 C 1.46906 * 110.99870 * 156.12436 * 13 3 2 15 15 H 1.09000 * 109.46896 * 34.84338 * 14 13 3 16 16 C 1.53001 * 109.47082 * 274.84572 * 14 13 3 17 17 C 1.50699 * 109.47317 * 154.84521 * 14 13 3 18 18 N 1.31801 * 119.12046 * 44.72712 * 17 14 13 19 19 C 1.32340 * 120.81344 * 179.76179 * 18 17 14 20 20 C 1.38594 * 119.10601 * 0.50441 * 19 18 17 21 21 C 1.38593 * 118.39863 * 359.75114 * 20 19 18 22 22 N 1.31793 * 119.12556 * 225.00053 * 17 14 13 23 23 H 1.09004 * 109.47194 * 55.42989 * 1 2 3 24 24 H 1.08999 * 109.47355 * 295.42911 * 1 2 3 25 25 H 1.09003 * 109.47006 * 175.42585 * 1 2 3 26 26 H 1.09002 * 109.46843 * 120.00265 * 2 1 3 27 27 H 1.09003 * 109.47250 * 240.00078 * 2 1 3 28 28 H 0.97001 * 119.99549 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00439 * 280.07488 * 13 3 2 30 30 H 1.08998 * 109.47243 * 65.02629 * 16 14 13 31 31 H 1.08997 * 109.47335 * 185.02643 * 16 14 13 32 32 H 1.09010 * 109.47361 * 305.02678 * 16 14 13 33 33 H 1.07996 * 120.44337 * 180.27866 * 19 18 17 34 34 H 1.07993 * 120.80210 * 179.77637 * 20 19 18 35 35 H 1.08007 * 120.44793 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9814 0.8421 5 6 3.5420 1.4443 0.1232 6 1 4.1469 1.8890 -0.6531 7 6 4.1438 0.8782 1.2271 8 7 3.4070 0.3371 2.1726 9 14 6.0054 0.8810 1.3801 10 1 6.4425 2.1138 2.0832 11 1 6.4404 -0.3101 2.1528 12 1 6.6135 0.8416 0.0258 13 7 1.6509 2.0994 -1.2549 14 6 1.5980 3.5584 -1.0910 15 1 2.3774 3.8746 -0.3979 16 6 0.2294 3.9600 -0.5373 17 6 1.8139 4.2221 -2.4266 18 7 1.1798 3.7566 -3.4842 19 6 1.3411 4.3168 -4.6723 20 6 2.1978 5.3992 -4.7966 21 6 2.8506 5.8567 -3.6629 22 7 2.6359 5.2491 -2.5071 23 1 -0.3634 0.5831 -0.8462 24 1 -0.3634 0.4413 0.9281 25 1 -0.3633 -1.0244 -0.0820 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.8305 -0.0614 2.9490 29 1 2.2737 1.8424 -2.0059 30 1 0.1100 3.5530 0.4668 31 1 0.1575 5.0470 -0.4995 32 1 -0.5544 3.5663 -1.1845 33 1 0.8152 3.9333 -5.5340 34 1 2.3525 5.8748 -5.7537 35 1 3.5252 6.6982 -3.7219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930694750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = 22.002009 kcal Electronic energy + Delta-G solvation = -16681.757139 eV Core-core repulsion = 14099.831578 eV Total energy + Delta-G solvation = -2581.925560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.95639 -38.38293 -35.40995 -34.60912 -33.56300 -32.09060 -30.36050 -27.91906 -25.80560 -25.37974 -24.46333 -22.01260 -21.27775 -18.77453 -18.42508 -17.83105 -16.78515 -16.36605 -15.92176 -15.76399 -15.33167 -14.94774 -14.59278 -14.27029 -13.78279 -13.57558 -13.23855 -13.11937 -12.91985 -12.70301 -12.53039 -12.34901 -12.07832 -11.79514 -11.62234 -11.49228 -11.35626 -11.00173 -10.45700 -10.37958 -10.10451 -9.09762 -8.06470 -6.28493 -0.02196 0.26415 1.35410 1.36752 1.45962 2.38541 2.83975 2.93285 3.13103 3.24039 3.80835 3.82799 4.11333 4.28967 4.39845 4.48802 4.61696 4.65227 4.81050 4.81943 4.91061 4.99320 5.05527 5.19682 5.29581 5.46691 5.51546 5.53401 5.65026 5.79182 6.10349 6.13453 6.21581 6.36704 6.72908 6.96351 7.25248 7.42230 8.89856 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.007858 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.484013 B = 3562.320228 C = 4313.666851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C 0.223 3.777 4 H 0.008 0.992 5 C -0.561 4.561 6 H 0.039 0.961 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.653 5.653 14 C 0.155 3.845 15 H 0.038 0.962 16 C -0.116 4.116 17 C 0.306 3.694 18 N -0.517 5.517 19 C 0.130 3.870 20 C -0.216 4.216 21 C 0.128 3.872 22 N -0.550 5.550 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.323 0.677 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 9.287 -12.962 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.600 4.600 6 H 0.057 0.943 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.773 3.227 10 H -0.204 1.204 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.283 5.283 14 C 0.043 3.957 15 H 0.056 0.944 16 C -0.174 4.174 17 C 0.038 3.962 18 N -0.231 5.231 19 C -0.035 4.035 20 C -0.237 4.237 21 C -0.036 4.036 22 N -0.265 5.265 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.218 0.782 34 H 0.208 0.792 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.442 8.670 -11.792 15.295 hybrid contribution 2.303 0.491 -0.258 2.368 sum -2.139 9.160 -12.050 15.287 Atomic orbital electron populations 1.21569 0.96182 0.99960 1.00569 1.21329 0.94614 0.97979 0.99929 1.19003 0.91319 0.91770 0.86514 0.97360 1.22111 0.94197 1.38216 1.05510 0.94275 1.25597 1.01929 0.94695 0.95419 1.69988 1.36276 1.38579 1.09687 0.85736 0.81304 0.77718 0.77944 1.20381 1.20285 1.20017 1.60955 1.55455 1.04085 1.07783 1.20043 0.98166 0.88815 0.88691 0.94389 1.21598 0.95115 0.99902 1.00802 1.23074 0.88478 0.89503 0.95118 1.68287 1.23899 1.30763 1.00157 1.24028 0.93232 0.91033 0.95197 1.23326 0.98693 0.99192 1.02496 1.23904 0.95268 0.97277 0.87197 1.68241 1.17225 1.10230 1.30777 0.92267 0.94861 0.93595 0.91872 0.95647 0.92734 0.86104 0.92782 0.92325 0.91480 0.78235 0.79173 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 9.85 71.98 0.71 -4.50 16 2 C -0.10 -4.94 5.45 30.59 0.17 -4.77 16 3 C 0.22 11.49 1.79 44.17 0.08 11.57 16 4 H 0.01 0.48 7.17 -2.39 -0.02 0.46 16 5 C -0.56 -31.71 8.21 25.60 0.21 -31.50 16 6 H 0.04 2.25 7.76 -2.91 -0.02 2.23 16 7 C 0.02 1.35 5.29 84.66 0.45 1.80 16 8 N -0.91 -52.52 11.30 21.45 0.24 -52.28 16 9 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 N -0.65 -29.29 5.24 -477.15 -2.50 -31.79 16 14 C 0.15 6.44 2.82 44.17 0.12 6.57 16 15 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 16 C -0.12 -4.23 9.36 71.98 0.67 -3.55 16 17 C 0.31 11.22 6.27 138.75 0.87 12.09 16 18 N -0.52 -16.79 10.04 -187.84 -1.89 -18.67 16 19 C 0.13 2.89 11.30 84.70 0.96 3.84 16 20 C -0.22 -3.77 10.17 22.44 0.23 -3.55 16 21 C 0.13 2.95 11.30 84.70 0.96 3.91 16 22 N -0.55 -18.67 10.32 -187.84 -1.94 -20.61 16 23 H 0.06 2.38 7.63 -2.39 -0.02 2.36 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 3.48 5.95 -2.39 -0.01 3.47 16 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.32 15.03 8.00 -89.70 -0.72 14.31 16 30 H 0.05 2.06 7.49 -2.39 -0.02 2.05 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.19 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -66.82 294.35 1.73 -65.10 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.36 Total: 19.58 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 5.42 Total: -8.09 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.08 Total: -123.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.82 1.73 -65.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930694750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds