Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86940 * 2 1 4 4 C 1.53533 * 109.81798 * 239.10461 * 2 1 3 5 5 N 1.46860 * 109.89830 * 190.56334 * 4 2 1 6 6 C 1.46907 * 110.99528 * 308.59392 * 5 4 2 7 7 C 1.53002 * 109.47002 * 308.52979 * 6 5 4 8 8 C 1.50694 * 109.46841 * 185.28989 * 7 6 5 9 9 H 1.07995 * 120.00220 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99880 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99783 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00074 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47299 * 89.99921 * 12 10 8 14 14 H 1.48501 * 109.47418 * 210.00346 * 12 10 8 15 15 H 1.48502 * 109.47003 * 330.00176 * 12 10 8 16 16 C 1.47327 * 111.70197 * 73.05599 * 5 4 2 17 17 C 1.50857 * 108.03799 * 308.04131 * 16 5 4 18 18 C 1.34369 * 129.06959 * 196.62488 * 17 16 5 19 19 N 1.35268 * 107.60554 * 179.64195 * 18 17 16 20 20 H 0.97002 * 125.99834 * 180.02562 * 19 18 17 21 21 N 1.40386 * 108.01063 * 0.04907 * 19 18 17 22 22 C 1.29841 * 108.08804 * 0.05150 * 21 19 18 23 23 H 1.09000 * 109.47144 * 299.09721 * 1 2 3 24 24 H 1.08999 * 109.47456 * 59.09306 * 1 2 3 25 25 H 1.08996 * 109.47493 * 179.09815 * 1 2 3 26 26 H 1.08999 * 109.40458 * 310.69438 * 4 2 1 27 27 H 1.08997 * 109.40199 * 70.43222 * 4 2 1 28 28 H 1.08996 * 109.47362 * 68.53569 * 6 5 4 29 29 H 1.09000 * 109.46875 * 188.53395 * 6 5 4 30 30 H 1.08994 * 109.47632 * 305.30111 * 7 6 5 31 31 H 1.08998 * 109.46489 * 65.29755 * 7 6 5 32 32 H 0.97002 * 119.99390 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.74687 * 188.40470 * 16 5 4 34 34 H 1.09002 * 109.74667 * 67.67967 * 16 5 4 35 35 H 1.07999 * 126.19165 * 359.64347 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0505 -0.7417 -1.2394 5 7 3.4971 -0.9640 -1.1180 6 6 4.1970 0.2874 -0.7983 7 6 3.7811 1.3728 -1.7933 8 6 4.5939 2.6177 -1.5472 9 1 5.3333 2.6331 -0.7602 10 6 4.3934 3.7372 -2.3268 11 7 3.4926 3.7186 -3.2848 12 14 5.4013 5.2801 -2.0222 13 1 6.6375 5.2341 -2.8439 14 1 4.6027 6.4750 -2.3960 15 1 5.7652 5.3579 -0.5846 16 6 3.8063 -2.0098 -0.1274 17 6 3.0935 -1.6629 1.1560 18 6 3.3058 -2.1334 2.3966 19 7 2.4257 -1.5223 3.2222 20 1 2.3471 -1.6653 4.1784 21 7 1.6455 -0.6452 2.4524 22 6 2.0421 -0.7297 1.2189 23 1 -0.3633 0.4997 0.8980 24 1 -0.3634 0.5278 -0.8817 25 1 -0.3634 -1.0275 -0.0162 26 1 1.5426 -1.7022 -1.3266 27 1 1.8493 -0.1453 -2.1293 28 1 3.9362 0.6016 0.2123 29 1 5.2734 0.1284 -0.8630 30 1 3.9553 1.0201 -2.8097 31 1 2.7227 1.5984 -1.6633 32 1 3.3519 4.5061 -3.8334 33 1 4.8817 -2.0458 0.0466 34 1 3.4590 -2.9766 -0.4920 35 1 4.0454 -2.8667 2.6826 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931457312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = 71.128183 kcal Electronic energy + Delta-G solvation = -16986.708405 eV Core-core repulsion = 14406.913116 eV Total energy + Delta-G solvation = -2579.795290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39772 -37.93851 -33.63181 -33.03313 -31.04276 -30.17979 -28.88858 -26.28308 -25.06326 -23.30899 -22.37784 -20.36340 -19.97997 -18.15489 -17.56171 -16.36242 -15.26379 -14.84101 -14.66365 -14.26717 -13.94026 -13.75274 -13.11498 -12.71192 -12.68798 -12.12871 -11.76952 -11.50257 -11.29381 -11.23159 -11.00911 -10.79262 -10.55158 -10.50754 -10.18494 -9.90928 -9.29920 -9.19645 -9.04222 -8.32469 -8.21312 -7.64135 -5.95884 -3.97245 2.06154 2.94505 2.99319 3.34995 3.41120 3.44595 4.45567 4.62823 4.77935 4.88275 5.27349 5.40424 5.41062 5.60206 5.71360 5.79277 5.84665 5.96004 6.01628 6.19361 6.23346 6.38496 6.45457 6.49820 6.57629 6.66433 6.87674 7.04089 7.41956 7.57174 7.66000 7.82739 7.88251 7.93979 8.12194 8.49061 9.09496 9.66109 11.15487 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.006777 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.644851 B = 4130.623655 C = 4214.844336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 H 0.107 0.893 4 C 0.068 3.932 5 N -0.533 5.533 6 C 0.060 3.940 7 C 0.023 3.977 8 C -0.519 4.519 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.889 3.111 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.130 3.870 17 C -0.267 4.267 18 C 0.058 3.942 19 N -0.495 5.495 20 H 0.434 0.566 21 N -0.288 5.288 22 C 0.101 3.899 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -12.307 9.103 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 H 0.125 0.875 4 C -0.061 4.061 5 N -0.253 5.253 6 C -0.067 4.067 7 C -0.014 4.014 8 C -0.558 4.558 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.001 3.999 17 C -0.280 4.280 18 C -0.087 4.087 19 N -0.204 5.204 20 H 0.277 0.723 21 N -0.109 5.109 22 C -0.069 4.069 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.405 -11.823 9.293 15.419 hybrid contribution 0.894 0.703 1.142 1.611 sum -2.512 -11.120 10.435 15.455 Atomic orbital electron populations 1.21651 0.93851 1.01444 1.02282 1.20626 0.96221 1.00592 0.90009 0.87493 1.22240 0.87898 0.99398 0.96568 1.62428 1.08033 1.09655 1.45228 1.22355 0.97288 0.88384 0.98653 1.19209 0.96745 0.91122 0.94360 1.21190 1.20662 0.97332 1.16646 0.92922 1.24965 0.95378 0.98672 0.95193 1.69962 1.33496 1.29533 1.20267 0.86636 0.80216 0.82932 0.78468 1.20658 1.21250 1.20016 1.20667 0.98430 0.95522 0.85299 1.21117 1.04359 1.05451 0.97076 1.21927 0.96340 0.99682 0.90797 1.46381 1.29108 1.34775 1.10090 0.72269 1.76886 1.17452 1.12977 1.03633 1.22385 0.94913 0.96342 0.93222 0.92419 0.91669 0.93154 0.91714 0.88830 0.95784 0.92177 0.95663 0.96101 0.93050 0.90541 0.90656 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.17 37.16 0.34 -1.66 16 2 C -0.05 -0.92 2.35 -91.34 -0.21 -1.14 16 3 H 0.11 2.20 5.89 -51.93 -0.31 1.90 16 4 C 0.07 1.17 4.59 -3.57 -0.02 1.16 16 5 N -0.53 -9.72 5.04 -235.29 -1.18 -10.90 16 6 C 0.06 1.29 4.30 -3.82 -0.02 1.27 16 7 C 0.02 0.59 4.10 -27.88 -0.11 0.47 16 8 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.13 1.96 6.16 -4.67 -0.03 1.93 16 17 C -0.27 -4.11 5.37 -104.98 -0.56 -4.67 16 18 C 0.06 0.72 11.96 -17.40 -0.21 0.51 16 19 N -0.50 -6.36 7.37 30.33 0.22 -6.13 16 20 H 0.43 3.91 8.96 -182.38 -1.63 2.27 16 21 N -0.29 -4.86 12.62 33.77 0.43 -4.44 16 22 C 0.10 1.75 5.73 -82.34 -0.47 1.28 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 27 H 0.09 1.74 6.87 -51.93 -0.36 1.39 16 28 H 0.02 0.54 5.91 -51.93 -0.31 0.23 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.55 5.57 -51.93 -0.29 0.26 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.08 1.07 8.05 -51.93 -0.42 0.66 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 279.72 15.07 4.22 4.22 Total: -1.00 -32.17 279.72 -8.54 -40.71 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.23 Total: 0.03 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.70 Total: -14.34 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.20 Total: -47.45 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.17 -8.54 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931457312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.837 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds